Wall clock time and date at job start Mon Mar 30 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99802 * 2 1 4 4 H 1.48501 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47060 * 300.00153 * 3 2 1 6 6 H 1.48496 * 109.47013 * 60.00551 * 3 2 1 7 7 C 1.37874 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00487 * 172.66255 * 7 2 1 9 9 C 1.50707 * 119.99890 * 352.66239 * 7 2 1 10 10 H 1.09006 * 109.46687 * 332.90820 * 9 7 2 11 11 C 1.53001 * 109.47056 * 212.91237 * 9 7 2 12 12 C 1.50702 * 109.47338 * 65.95529 * 11 9 7 13 13 O 1.20827 * 119.99826 * 5.93133 * 12 11 9 14 14 O 1.34225 * 119.99752 * 185.65760 * 12 11 9 15 15 C 1.50697 * 109.47218 * 92.90999 * 9 7 2 16 16 C 1.38672 * 120.41957 * 240.00239 * 15 9 7 17 17 C 1.38626 * 118.42254 * 180.02562 * 16 15 9 18 18 C 1.38222 * 119.16136 * 359.97438 * 17 16 15 19 19 N 1.31857 * 120.76282 * 0.02562 * 18 17 16 20 20 C 1.31886 * 121.72758 * 359.70723 * 19 18 17 21 21 H 0.97003 * 120.00371 * 5.01996 * 1 2 3 22 22 H 1.09002 * 109.46719 * 305.95209 * 11 9 7 23 23 H 1.08998 * 109.47051 * 185.95972 * 11 9 7 24 24 H 0.96702 * 116.99770 * 180.27625 * 14 12 11 25 25 H 1.08009 * 120.78862 * 359.97438 * 16 15 9 26 26 H 1.08004 * 120.41766 * 180.02562 * 17 16 15 27 27 H 1.08002 * 119.62021 * 179.97438 * 18 17 16 28 28 H 1.07996 * 119.62031 * 180.31383 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1200 9 6 1.2603 -2.4939 0.1656 10 1 0.3435 -2.3182 0.7285 11 6 2.1396 -3.4920 0.9216 12 6 2.3616 -3.0006 2.3288 13 8 1.7820 -2.0167 2.7236 14 8 3.1990 -3.6592 3.1454 15 6 0.9175 -3.0534 -1.1910 16 6 -0.4052 -3.2667 -1.5488 17 6 -0.6734 -3.7835 -2.8069 18 6 0.3791 -4.0665 -3.6571 19 7 1.6250 -3.8508 -3.2831 20 6 1.9170 -3.3555 -2.0962 21 1 -0.4851 0.8368 -0.0735 22 1 3.0996 -3.5873 0.4143 23 1 1.6454 -4.4631 0.9495 24 1 3.3059 -3.3085 4.0402 25 1 -1.2074 -3.0364 -0.8632 26 1 -1.6918 -3.9619 -3.1190 27 1 0.1786 -4.4697 -4.6387 28 1 2.9493 -3.1877 -1.8270 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084451839.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:31 Heat of formation + Delta-G solvation = -67.814177 kcal Electronic energy + Delta-G solvation = -14739.342177 eV Core-core repulsion = 12140.933668 eV Total energy + Delta-G solvation = -2598.408509 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.60062 -39.06860 -35.56955 -34.40552 -31.78823 -31.27601 -29.29188 -25.98663 -23.52565 -22.65414 -21.33293 -19.51634 -17.29455 -16.78854 -16.30564 -15.79156 -14.98877 -14.94533 -14.53263 -13.96102 -13.14682 -12.66367 -12.57610 -12.28450 -12.15314 -11.99117 -11.09721 -10.91765 -10.78582 -10.64918 -10.58627 -9.78626 -9.62384 -9.28726 -8.88253 -8.73191 -8.43322 -7.92787 -6.09612 -4.12734 1.99495 2.19623 3.11468 3.29057 3.36929 3.39267 3.82455 4.39057 4.68963 5.20657 5.27179 5.57672 5.85331 5.90941 5.95333 6.00453 6.06176 6.19115 6.47049 6.59303 6.76591 6.99671 7.18686 7.24580 7.59621 7.62724 7.82922 8.16324 8.74023 8.78159 8.89154 9.51493 10.99068 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.012888 C = 0.009072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.358932 B = 2172.045328 C = 3085.614804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.508 4.508 8 H 0.057 0.943 9 C 0.080 3.920 10 H 0.076 0.924 11 C -0.097 4.097 12 C 0.473 3.527 13 O -0.482 6.482 14 O -0.537 6.537 15 C -0.069 4.069 16 C -0.077 4.077 17 C -0.178 4.178 18 C 0.056 3.944 19 N -0.496 5.496 20 C 0.093 3.907 21 H 0.262 0.738 22 H 0.089 0.911 23 H 0.079 0.921 24 H 0.396 0.604 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.139 0.861 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.239 -7.319 0.351 7.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.126 4.126 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.545 4.545 8 H 0.076 0.924 9 C 0.061 3.939 10 H 0.094 0.906 11 C -0.135 4.135 12 C 0.314 3.686 13 O -0.366 6.366 14 O -0.350 6.350 15 C -0.071 4.071 16 C -0.103 4.103 17 C -0.198 4.198 18 C -0.100 4.100 19 N -0.205 5.205 20 C -0.064 4.064 21 H 0.072 0.928 22 H 0.108 0.892 23 H 0.097 0.903 24 H 0.253 0.747 25 H 0.144 0.856 26 H 0.137 0.863 27 H 0.156 0.844 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.523 -7.249 -0.465 7.422 hybrid contribution -0.285 1.582 1.036 1.912 sum 1.238 -5.667 0.570 5.829 Atomic orbital electron populations 1.69880 1.06047 1.27037 1.48479 1.24883 0.94774 0.99212 0.93717 0.86548 0.80252 0.83777 0.77497 1.19690 1.21146 1.20829 1.20838 0.93124 0.89430 1.51132 0.92440 1.17857 0.97344 0.91415 0.87332 0.90583 1.21566 1.03143 1.00393 0.88430 1.23643 0.75446 0.81253 0.88256 1.90749 1.45789 1.24573 1.75510 1.84583 1.63529 1.58791 1.28048 1.21598 0.92949 0.92115 1.00455 1.21493 0.97158 0.95729 0.95906 1.21972 0.99795 1.02346 0.95697 1.22349 0.88414 1.00049 0.99200 1.67545 1.22079 1.12867 1.17959 1.22486 0.99884 0.95391 0.88659 0.92830 0.89249 0.90266 0.74710 0.85557 0.86324 0.84399 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 12.90 55.43 0.72 -24.08 15 2 C 0.08 2.14 5.45 -17.82 -0.10 2.04 15 3 Si 0.89 21.58 29.55 -169.99 -5.02 16.55 15 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.51 -13.16 6.75 -34.44 -0.23 -13.39 15 8 H 0.06 1.48 7.82 -52.49 -0.41 1.06 15 9 C 0.08 1.83 1.65 -92.92 -0.15 1.68 15 10 H 0.08 1.98 6.96 -51.93 -0.36 1.61 15 11 C -0.10 -1.84 5.00 -27.88 -0.14 -1.98 15 12 C 0.47 9.26 8.02 36.01 0.29 9.55 15 13 O -0.48 -11.45 15.91 -18.75 -0.30 -11.75 15 14 O -0.54 -8.27 13.42 -39.24 -0.53 -8.80 15 15 C -0.07 -1.47 4.78 -104.48 -0.50 -1.97 15 16 C -0.08 -1.55 9.81 -39.28 -0.39 -1.93 15 17 C -0.18 -3.12 10.11 -39.44 -0.40 -3.52 15 18 C 0.06 1.00 11.18 -17.55 -0.20 0.80 15 19 N -0.50 -9.89 10.36 -13.25 -0.14 -10.03 15 20 C 0.09 1.91 10.06 -17.55 -0.18 1.73 15 21 H 0.26 7.12 8.32 -40.82 -0.34 6.78 15 22 H 0.09 1.57 7.64 -51.93 -0.40 1.17 15 23 H 0.08 1.31 8.14 -51.93 -0.42 0.88 15 24 H 0.40 4.36 9.10 45.56 0.41 4.77 15 25 H 0.13 2.51 8.00 -52.48 -0.42 2.09 15 26 H 0.12 1.70 8.06 -52.48 -0.42 1.27 15 27 H 0.14 1.97 8.06 -52.49 -0.42 1.55 15 28 H 0.15 2.83 7.68 -52.49 -0.40 2.43 15 LS Contribution 256.07 15.07 3.86 3.86 Total: -1.00 -31.26 256.07 -5.38 -36.64 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -1.98 Total: 4.59 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.99 Total: -6.99 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.58 Total: -34.11 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.83 Total: -20.54 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.26 -5.38 -36.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451839.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.176 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds