Wall clock time and date at job start Mon Mar 30 2020 03:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99802 * 2 1 4 4 H 1.48501 * 109.46690 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47060 * 300.00153 * 3 2 1 6 6 H 1.48496 * 109.47013 * 60.00551 * 3 2 1 7 7 C 1.37874 * 120.00245 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00487 * 172.66255 * 7 2 1 9 9 C 1.50707 * 119.99890 * 352.66239 * 7 2 1 10 10 H 1.09006 * 109.46687 * 332.90820 * 9 7 2 11 11 C 1.53001 * 109.47056 * 212.91237 * 9 7 2 12 12 C 1.50702 * 109.47338 * 65.95529 * 11 9 7 13 13 O 1.20827 * 119.99826 * 5.93133 * 12 11 9 14 14 O 1.34225 * 119.99752 * 185.65760 * 12 11 9 15 15 C 1.50697 * 109.47218 * 92.90999 * 9 7 2 16 16 C 1.38672 * 120.41957 * 240.00239 * 15 9 7 17 17 C 1.38626 * 118.42254 * 180.02562 * 16 15 9 18 18 C 1.38222 * 119.16136 * 359.97438 * 17 16 15 19 19 N 1.31857 * 120.76282 * 0.02562 * 18 17 16 20 20 C 1.31886 * 121.72758 * 359.70723 * 19 18 17 21 21 H 0.97003 * 120.00371 * 5.01996 * 1 2 3 22 22 H 1.09002 * 109.46719 * 305.95209 * 11 9 7 23 23 H 1.08998 * 109.47051 * 185.95972 * 11 9 7 24 24 H 0.96702 * 116.99770 * 180.27625 * 14 12 11 25 25 H 1.08009 * 120.78862 * 359.97438 * 16 15 9 26 26 H 1.08004 * 120.41766 * 180.02562 * 17 16 15 27 27 H 1.08002 * 119.62021 * 179.97438 * 18 17 16 28 28 H 1.07996 * 119.62031 * 180.31383 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0779 -1.1978 -0.1200 9 6 1.2603 -2.4939 0.1656 10 1 0.3435 -2.3182 0.7285 11 6 2.1396 -3.4920 0.9216 12 6 2.3616 -3.0006 2.3288 13 8 1.7820 -2.0167 2.7236 14 8 3.1990 -3.6592 3.1454 15 6 0.9175 -3.0534 -1.1910 16 6 -0.4052 -3.2667 -1.5488 17 6 -0.6734 -3.7835 -2.8069 18 6 0.3791 -4.0665 -3.6571 19 7 1.6250 -3.8508 -3.2831 20 6 1.9170 -3.3555 -2.0962 21 1 -0.4851 0.8368 -0.0735 22 1 3.0996 -3.5873 0.4143 23 1 1.6454 -4.4631 0.9495 24 1 3.3059 -3.3085 4.0402 25 1 -1.2074 -3.0364 -0.8632 26 1 -1.6918 -3.9619 -3.1190 27 1 0.1786 -4.4697 -4.6387 28 1 2.9493 -3.1877 -1.8270 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084451839.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:30 Heat of formation + Delta-G solvation = -88.894420 kcal Electronic energy + Delta-G solvation = -14740.256285 eV Core-core repulsion = 12140.933668 eV Total energy + Delta-G solvation = -2599.322617 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.14734 -40.57710 -37.06492 -36.11711 -33.67255 -32.79819 -30.81162 -27.82358 -25.23961 -24.17717 -22.83455 -21.14665 -18.79286 -18.68533 -17.79463 -17.29791 -16.60084 -16.49654 -16.42737 -15.43619 -14.77255 -14.27239 -14.20372 -13.87544 -13.68962 -13.61418 -12.93945 -12.69799 -12.54886 -12.28510 -12.21489 -11.60535 -11.30709 -11.09053 -10.63483 -10.38862 -10.09768 -9.50093 -8.11986 -6.17615 0.51342 0.66005 1.35513 1.39654 1.47150 1.57235 2.41386 2.43969 3.13205 3.28476 3.82355 4.19994 4.31916 4.38056 4.47240 4.54798 4.58869 4.72121 4.95110 5.11602 5.27757 5.43824 5.59443 5.68927 5.85054 5.96239 6.07906 6.25622 6.91183 7.28266 7.32479 7.47677 8.96270 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019612 B = 0.012888 C = 0.009072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.358932 B = 2172.045328 C = 3085.614804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.289 1.289 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.084 3.916 10 H 0.037 0.963 11 C -0.096 4.096 12 C 0.481 3.519 13 O -0.533 6.533 14 O -0.520 6.520 15 C -0.088 4.088 16 C -0.093 4.093 17 C -0.169 4.169 18 C 0.060 3.940 19 N -0.509 5.509 20 C 0.085 3.915 21 H 0.258 0.742 22 H 0.108 0.892 23 H 0.106 0.894 24 H 0.418 0.582 25 H 0.118 0.882 26 H 0.156 0.844 27 H 0.179 0.821 28 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.852 -8.640 -0.684 8.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.215 1.215 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.065 3.935 10 H 0.055 0.945 11 C -0.134 4.134 12 C 0.324 3.676 13 O -0.421 6.421 14 O -0.333 6.333 15 C -0.091 4.091 16 C -0.119 4.119 17 C -0.188 4.188 18 C -0.096 4.096 19 N -0.218 5.218 20 C -0.072 4.072 21 H 0.067 0.933 22 H 0.126 0.874 23 H 0.124 0.876 24 H 0.279 0.721 25 H 0.136 0.864 26 H 0.173 0.827 27 H 0.196 0.804 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.181 -8.596 -1.482 8.992 hybrid contribution -0.472 1.851 1.351 2.340 sum 1.708 -6.745 -0.131 6.960 Atomic orbital electron populations 1.69992 1.07055 1.27086 1.50797 1.25536 0.95455 1.01915 0.94484 0.85813 0.79662 0.81003 0.77044 1.18836 1.20905 1.21548 1.21154 0.93148 0.90804 1.49188 0.92629 1.17632 0.95980 0.91587 0.88339 0.94477 1.21493 1.03508 1.00385 0.87992 1.23703 0.74856 0.80355 0.88718 1.90746 1.47932 1.26890 1.76562 1.84509 1.61788 1.57762 1.29282 1.21426 0.93941 0.93956 0.99743 1.21625 0.96565 0.96455 0.97262 1.22320 1.01809 1.00515 0.94187 1.23050 0.87549 0.98450 1.00589 1.67607 1.23444 1.13188 1.17516 1.22515 0.99911 0.95827 0.88905 0.93323 0.87426 0.87567 0.72138 0.86403 0.82670 0.80410 0.83157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.89 12.90 21.45 0.28 -52.61 15 2 C 0.03 1.45 5.45 84.65 0.46 1.91 15 3 Si 0.94 44.77 29.55 68.60 2.03 46.79 15 4 H -0.26 -12.10 7.11 99.48 0.71 -11.39 15 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 15 6 H -0.29 -13.98 7.11 99.48 0.71 -13.27 15 7 C -0.51 -26.38 6.75 25.60 0.17 -26.21 15 8 H 0.06 2.85 7.82 -2.91 -0.02 2.82 15 9 C 0.08 3.89 1.65 -12.28 -0.02 3.87 15 10 H 0.04 2.00 6.96 -2.38 -0.02 1.98 15 11 C -0.10 -3.54 5.00 29.85 0.15 -3.39 15 12 C 0.48 18.41 8.02 71.24 0.57 18.98 15 13 O -0.53 -25.63 15.91 21.96 0.35 -25.28 15 14 O -0.52 -14.84 13.42 -51.37 -0.69 -15.53 15 15 C -0.09 -3.75 4.78 -19.77 -0.09 -3.84 15 16 C -0.09 -3.67 9.81 22.47 0.22 -3.45 15 17 C -0.17 -5.44 10.11 22.36 0.23 -5.21 15 18 C 0.06 1.93 11.18 84.69 0.95 2.87 15 19 N -0.51 -19.08 10.36 -195.84 -2.03 -21.11 15 20 C 0.08 3.37 10.06 84.67 0.85 4.22 15 21 H 0.26 14.46 8.32 -92.71 -0.77 13.68 15 22 H 0.11 3.57 7.64 -2.39 -0.02 3.56 15 23 H 0.11 3.32 8.14 -2.39 -0.02 3.30 15 24 H 0.42 8.23 9.10 -74.06 -0.67 7.55 15 25 H 0.12 4.77 8.00 -2.91 -0.02 4.75 15 26 H 0.16 3.81 8.06 -2.91 -0.02 3.78 15 27 H 0.18 4.20 8.06 -2.91 -0.02 4.17 15 28 H 0.15 5.67 7.68 -2.91 -0.02 5.65 15 Total: -1.00 -67.87 256.07 3.92 -63.94 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.51 Total: 14.04 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: 3.48 Total: -10.25 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.75 Total: -73.73 kcal Atomic # 8 Polarization: -40.46 SS G_CDS: -0.34 Total: -40.80 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -67.87 3.92 -63.94 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084451839.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.950 kcal (2) G-P(sol) polarization free energy of solvation -67.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds