Wall clock time and date at job start Mon Mar 30 2020 02:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30925 * 1 3 3 Si 1.86801 * 119.99840 * 2 1 4 4 H 1.48503 * 109.46852 * 274.98158 * 3 2 1 5 5 H 1.48497 * 109.47209 * 34.97606 * 3 2 1 6 6 H 1.48500 * 109.47672 * 154.98161 * 3 2 1 7 7 C 1.39786 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00005 * 186.04778 * 7 2 1 9 9 C 1.41397 * 119.99935 * 6.04713 * 7 2 1 10 10 C 1.41625 * 126.21603 * 174.35508 * 9 7 2 11 11 N 1.31050 * 106.54261 * 179.97438 * 10 9 7 12 12 N 1.40033 * 107.45900 * 0.02562 * 11 10 9 13 13 C 1.39146 * 125.42972 * 179.97438 * 12 11 10 14 14 C 1.34465 * 125.24346 * 359.73823 * 13 12 11 15 15 C 1.38081 * 114.75982 * 180.26645 * 14 13 12 16 16 C 1.33625 * 115.01559 * 359.97438 * 15 14 13 17 17 S 1.75866 * 109.71328 * 0.02562 * 16 15 14 18 18 N 1.28694 * 109.15070 * 0.22381 * 12 11 10 19 19 H 0.96993 * 120.00482 * 0.02562 * 1 2 3 20 20 H 1.08005 * 126.72882 * 359.97438 * 10 9 7 21 21 H 1.07999 * 122.61683 * 0.24405 * 14 13 12 22 22 H 1.08000 * 122.48940 * 179.97438 * 15 14 13 23 23 H 1.08000 * 125.14482 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3854 2.1072 -1.3948 5 1 1.4972 2.6200 0.8026 6 1 3.5895 1.4123 0.5921 7 6 2.0083 -1.2105 0.0005 8 1 3.0838 -1.2130 0.0991 9 6 1.3072 -2.4318 -0.1279 10 6 1.8847 -3.7186 -0.2556 11 7 0.8897 -4.5666 -0.3472 12 7 -0.2986 -3.8290 -0.2793 13 6 -1.5829 -4.3610 -0.3411 14 6 -1.8764 -5.6657 -0.4805 15 6 -3.2262 -5.9536 -0.5226 16 6 -4.0335 -4.8939 -0.4179 17 16 -3.0726 -3.4299 -0.2561 18 7 -0.0138 -2.5800 -0.1559 19 1 -0.4850 0.8399 -0.0004 20 1 2.9384 -3.9548 -0.2738 21 1 -1.1158 -6.4289 -0.5543 22 1 -3.6016 -6.9603 -0.6319 23 1 -5.1128 -4.9308 -0.4316 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084930520.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:41 Heat of formation + Delta-G solvation = 116.263304 kcal Electronic energy + Delta-G solvation = -12120.135930 eV Core-core repulsion = 9868.922147 eV Total energy + Delta-G solvation = -2251.213783 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.42394 -38.61606 -35.60643 -33.83732 -32.15097 -29.91033 -27.31342 -25.16460 -22.94006 -22.58710 -19.90230 -19.16613 -18.76996 -16.96659 -16.51148 -16.45371 -15.74689 -15.02691 -14.78145 -13.87365 -13.65584 -13.53510 -13.14323 -12.94701 -12.66824 -12.12518 -11.68064 -11.59120 -11.48166 -11.19635 -10.85575 -10.31279 -9.50827 -8.92738 -8.46127 -6.40692 -0.24335 0.28558 1.13983 1.25559 1.42137 1.46393 1.61460 1.91105 1.95101 2.19729 2.29802 3.37626 3.73232 4.26551 4.41752 4.54030 4.71166 5.05144 5.22827 5.31613 5.41592 5.50828 5.59030 6.12335 6.44935 6.69493 6.93304 7.99757 8.53090 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.046270 B = 0.008592 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.003907 B = 3258.127430 C = 3851.108558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.018 3.982 3 Si 0.997 3.003 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.247 1.247 7 C -0.454 4.454 8 H 0.110 0.890 9 C 0.121 3.879 10 C -0.010 4.010 11 N -0.321 5.321 12 N -0.217 5.217 13 C 0.062 3.938 14 C -0.190 4.190 15 C -0.106 4.106 16 C -0.230 4.230 17 S 0.128 5.872 18 N -0.344 5.344 19 H 0.279 0.721 20 H 0.228 0.772 21 H 0.141 0.859 22 H 0.182 0.818 23 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.165 -4.867 -0.663 6.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.199 4.199 3 Si 0.818 3.182 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.170 1.170 7 C -0.495 4.495 8 H 0.128 0.872 9 C -0.033 4.033 10 C -0.206 4.206 11 N -0.148 5.148 12 N -0.100 5.100 13 C -0.151 4.151 14 C -0.224 4.224 15 C -0.136 4.136 16 C -0.367 4.367 17 S 0.386 5.614 18 N -0.185 5.185 19 H 0.088 0.912 20 H 0.244 0.756 21 H 0.159 0.841 22 H 0.199 0.801 23 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.957 -3.889 -0.573 7.137 hybrid contribution 1.664 -0.333 -0.104 1.700 sum -4.293 -4.222 -0.677 6.059 Atomic orbital electron populations 1.70114 1.09080 1.29455 1.34852 1.26905 0.95670 1.04823 0.92517 0.84957 0.79094 0.75352 0.78831 1.19337 1.20238 1.16984 1.19195 0.95390 0.88103 1.46790 0.87205 1.21011 0.87840 0.95226 0.99267 1.25742 1.00117 0.91538 1.03161 1.77155 0.91950 1.23798 1.21939 1.47125 1.02475 1.02139 1.58299 1.21939 0.85518 0.97106 1.10579 1.20199 0.99076 0.92954 1.10208 1.20069 0.89880 1.01663 1.01995 1.26085 1.04677 0.93644 1.12249 1.84790 0.92795 1.10287 1.73504 1.74996 1.16981 0.95794 1.30736 0.91153 0.75603 0.84111 0.80095 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.20 11.97 21.80 0.26 -44.94 14 2 C 0.02 0.91 5.49 85.20 0.47 1.37 14 3 Si 1.00 38.38 29.56 68.60 2.03 40.41 14 4 H -0.27 -10.08 7.11 99.48 0.71 -9.38 14 5 H -0.28 -10.48 7.11 99.48 0.71 -9.78 14 6 H -0.25 -8.78 7.11 99.48 0.71 -8.07 14 7 C -0.45 -23.97 9.39 23.42 0.22 -23.75 14 8 H 0.11 5.12 7.85 -2.91 -0.02 5.09 14 9 C 0.12 6.70 6.76 40.59 0.27 6.97 14 10 C -0.01 -0.46 12.13 85.65 1.04 0.57 14 11 N -0.32 -16.06 12.34 -55.73 -0.69 -16.75 14 12 N -0.22 -11.59 4.40 -53.71 -0.24 -11.83 14 13 C 0.06 2.86 7.39 82.67 0.61 3.47 14 14 C -0.19 -7.09 9.93 21.37 0.21 -6.88 14 15 C -0.11 -2.96 10.17 21.19 0.22 -2.74 14 16 C -0.23 -6.29 11.23 66.77 0.75 -5.54 14 17 S 0.13 4.98 23.17 -56.49 -1.31 3.67 14 18 N -0.34 -20.20 10.09 -51.92 -0.52 -20.73 14 19 H 0.28 14.28 8.30 -92.71 -0.77 13.51 14 20 H 0.23 8.25 8.06 -2.91 -0.02 8.22 14 21 H 0.14 5.16 8.06 -2.91 -0.02 5.13 14 22 H 0.18 3.43 8.06 -2.91 -0.02 3.40 14 23 H 0.21 3.75 8.06 -2.91 -0.02 3.72 14 Total: -1.00 -69.38 233.70 4.56 -64.82 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.23 Total: 11.87 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 3.79 Total: -26.52 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -1.19 Total: -94.25 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.31 Total: 3.67 kcal Total: -69.38 4.56 -64.82 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084930520.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.086 kcal (2) G-P(sol) polarization free energy of solvation -69.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds