Wall clock time and date at job start Mon Mar 30 2020 02:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39809 * 120.11107 * 260.27823 * 3 2 1 5 5 C 1.37664 * 119.92678 * 179.69618 * 4 3 2 6 6 C 1.39051 * 120.16051 * 0.58221 * 5 4 3 7 7 O 1.35748 * 119.88912 * 179.69402 * 6 5 4 8 8 C 1.42907 * 116.99991 * 0.02562 * 7 6 5 9 9 C 1.50699 * 109.47333 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99936 * 359.97438 * 9 8 7 11 11 C 1.37868 * 119.99936 * 180.02562 * 9 8 7 12 12 N 1.31514 * 120.00396 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00174 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46766 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47643 * 119.99702 * 13 11 9 16 16 H 1.48505 * 109.47120 * 239.99799 * 13 11 9 17 17 C 1.38835 * 120.22713 * 359.71632 * 6 5 4 18 18 C 1.38055 * 120.07269 * 359.97438 * 17 6 5 19 19 F 1.35098 * 120.08359 * 179.97438 * 18 17 6 20 20 H 1.08005 * 120.04068 * 359.97438 * 4 3 2 21 21 H 1.08000 * 119.92501 * 180.27925 * 5 4 3 22 22 H 1.09002 * 109.46661 * 299.99619 * 8 7 6 23 23 H 1.08999 * 109.47049 * 59.99782 * 8 7 6 24 24 H 0.97001 * 120.00512 * 180.02562 * 12 11 9 25 25 H 1.08000 * 119.96166 * 179.97438 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 0.2052 1.1921 5 6 4.6459 0.1988 1.1888 6 6 5.3408 0.0015 0.0006 7 8 6.6983 0.0024 0.0027 8 6 7.3450 0.2113 1.2598 9 6 8.8393 0.1794 1.0675 10 1 9.2537 0.0156 0.0837 11 6 9.6773 0.3583 2.1475 12 7 9.1727 0.5573 3.3456 13 14 11.5296 0.3195 1.9091 14 1 11.8393 0.0821 0.4763 15 1 12.1107 1.6187 2.3328 16 1 12.1114 -0.7737 2.7286 17 6 4.6510 -0.1961 -1.1880 18 6 3.2705 -0.1979 -1.1945 19 9 2.5990 -0.3896 -2.3511 20 1 2.7317 0.3635 2.1153 21 1 5.1876 0.3523 2.1104 22 1 7.0508 1.1803 1.6631 23 1 7.0515 -0.5757 1.9545 24 1 9.7622 0.6835 4.1054 25 1 5.1950 -0.3485 -2.1084 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087542715.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:19 Heat of formation + Delta-G solvation = -38.777018 kcal Electronic energy + Delta-G solvation = -13563.221943 eV Core-core repulsion = 10842.612275 eV Total energy + Delta-G solvation = -2720.609668 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.02792 -39.75109 -37.41536 -35.94937 -33.10398 -31.01807 -30.10432 -27.81971 -23.90005 -23.30911 -21.91822 -19.05638 -17.82576 -17.08936 -16.38599 -15.83749 -15.63179 -14.87517 -14.83142 -14.22864 -13.96255 -13.62226 -13.41146 -13.21019 -12.55017 -12.07388 -11.96532 -11.91275 -11.12980 -11.12634 -11.00886 -10.37350 -10.35030 -9.46921 -8.93995 -8.73131 -7.98951 -6.39665 -4.44384 0.85386 1.21323 2.68591 3.00682 3.14967 3.22328 3.26894 3.63383 3.81993 3.93905 4.17317 4.39283 4.82566 4.98551 5.17109 5.32202 5.46558 5.84878 5.93155 6.21888 6.32560 6.62105 6.73809 6.90069 7.49871 7.52662 7.74638 8.10735 8.65870 9.21932 10.71308 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.066184 B = 0.005482 C = 0.005076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.961433 B = 5106.610682 C = 5514.426828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.269 3.731 3 C -0.133 4.133 4 C 0.001 3.999 5 C -0.224 4.224 6 C 0.215 3.785 7 O -0.301 6.301 8 C 0.187 3.813 9 C -0.529 4.529 10 H 0.073 0.927 11 C 0.062 3.938 12 N -0.892 5.892 13 Si 0.914 3.086 14 H -0.269 1.269 15 H -0.280 1.280 16 H -0.280 1.280 17 C -0.209 4.209 18 C 0.185 3.815 19 F -0.130 7.130 20 H 0.141 0.859 21 H 0.152 0.848 22 H 0.030 0.970 23 H 0.030 0.970 24 H 0.269 0.731 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 -0.653 -3.990 7.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.045 4.045 3 C -0.138 4.138 4 C -0.019 4.019 5 C -0.243 4.243 6 C 0.164 3.836 7 O -0.211 6.211 8 C 0.115 3.885 9 C -0.567 4.567 10 H 0.091 0.909 11 C -0.141 4.141 12 N -0.530 5.530 13 Si 0.741 3.259 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.206 1.206 17 C -0.229 4.229 18 C 0.163 3.837 19 F -0.108 7.108 20 H 0.159 0.841 21 H 0.170 0.830 22 H 0.047 0.953 23 H 0.047 0.953 24 H 0.078 0.922 25 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.242 -0.653 -3.993 9.182 hybrid contribution 1.248 0.013 0.081 1.251 sum -6.994 -0.640 -3.912 8.039 Atomic orbital electron populations 1.81193 1.11936 1.10542 1.07257 1.25370 0.92290 0.93082 0.93781 1.15758 0.84714 1.18949 0.94367 1.20793 0.93397 0.92012 0.95712 1.21516 0.94300 1.09073 0.99396 1.19166 0.85310 0.86890 0.92245 1.86162 1.13128 1.82444 1.39404 1.20896 0.92771 0.97044 0.77775 1.20973 0.88611 1.51273 0.95822 0.90863 1.24925 1.00149 0.94422 0.94555 1.69933 1.36030 1.47733 0.99305 0.86170 0.83143 0.77906 0.78691 1.19285 1.20583 1.20588 1.20169 0.91077 1.12282 0.99327 1.17117 0.89123 0.97323 0.80104 1.91523 1.80346 1.92008 1.46913 0.84145 0.83015 0.95266 0.95268 0.92171 0.83192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.91 18.54 41.83 0.78 -6.14 15 2 C 0.27 3.87 14.97 -22.47 -0.34 3.53 15 3 C -0.13 -1.78 5.75 -106.72 -0.61 -2.39 15 4 C 0.00 0.02 9.75 -39.20 -0.38 -0.36 15 5 C -0.22 -3.31 9.01 -39.49 -0.36 -3.67 15 6 C 0.22 3.58 6.69 -39.06 -0.26 3.32 15 7 O -0.30 -6.20 10.11 -18.95 -0.19 -6.39 15 8 C 0.19 4.35 4.49 36.00 0.16 4.51 15 9 C -0.53 -13.80 9.43 -34.44 -0.32 -14.13 15 10 H 0.07 1.90 7.81 -52.49 -0.41 1.49 15 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 12 N -0.89 -23.98 13.29 55.43 0.74 -23.25 15 13 Si 0.91 19.95 29.54 -169.99 -5.02 14.93 15 14 H -0.27 -5.78 7.11 56.52 0.40 -5.37 15 15 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 16 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 17 C -0.21 -3.02 9.95 -39.43 -0.39 -3.41 15 18 C 0.19 2.55 7.27 -38.99 -0.28 2.27 15 19 F -0.13 -1.81 16.81 2.25 0.04 -1.77 15 20 H 0.14 1.37 8.06 -52.48 -0.42 0.95 15 21 H 0.15 2.32 6.27 -52.49 -0.33 1.99 15 22 H 0.03 0.69 7.65 -51.93 -0.40 0.30 15 23 H 0.03 0.69 7.65 -51.93 -0.40 0.30 15 24 H 0.27 6.78 8.31 -40.82 -0.34 6.44 15 25 H 0.15 1.97 8.06 -52.49 -0.42 1.55 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -26.99 246.18 -4.35 -31.34 By element: Atomic # 1 Polarization: -2.13 SS G_CDS: -1.51 Total: -3.64 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -2.89 Total: -8.79 kcal Atomic # 7 Polarization: -30.89 SS G_CDS: 1.51 Total: -29.38 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.19 Total: -6.39 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.99 -4.35 -31.34 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087542715.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.434 kcal (2) G-P(sol) polarization free energy of solvation -26.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds