Wall clock time and date at job start Mon Mar 30 2020 03:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.46683 * 239.99731 * 3 2 1 5 5 H 1.48493 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47059 * 120.00133 * 3 2 1 7 7 C 1.37879 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46953 * 300.00698 * 9 7 2 11 11 N 1.46899 * 109.46819 * 60.00267 * 9 7 2 12 12 C 1.50693 * 109.47225 * 179.97438 * 9 7 2 13 13 C 1.38372 * 119.84551 * 99.99737 * 12 9 7 14 14 C 1.37947 * 120.14939 * 179.97438 * 13 12 9 15 15 C 1.39626 * 119.84448 * 0.26453 * 14 13 12 16 16 C 1.47733 * 120.14537 * 179.74100 * 15 14 13 17 17 O 1.21467 * 120.00108 * 359.97438 * 16 15 14 18 18 O 1.34709 * 119.99593 * 179.97438 * 16 15 14 19 19 C 1.39629 * 119.70461 * 359.48690 * 15 14 13 20 20 C 1.37944 * 119.84175 * 0.53069 * 19 15 14 21 21 H 0.96996 * 119.99960 * 0.02562 * 1 2 3 22 22 H 1.00905 * 111.00047 * 296.03943 * 11 9 7 23 23 H 1.00895 * 111.00518 * 59.99936 * 11 9 7 24 24 H 1.07999 * 119.92634 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.07327 * 179.97438 * 14 13 12 26 26 H 0.96704 * 116.99620 * 179.97438 * 18 16 15 27 27 H 1.07997 * 120.07773 * 180.25040 * 19 15 14 28 28 H 1.08003 * 119.91758 * 179.72138 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 7 0.4062 -2.5778 -1.1974 12 6 2.2304 -3.6446 0.0015 13 6 2.5204 -4.3029 1.1835 14 6 3.4154 -5.3525 1.1904 15 6 4.0333 -5.7466 0.0019 16 6 4.9972 -6.8662 0.0027 17 8 5.2541 -7.4457 1.0388 18 8 5.5912 -7.2442 -1.1458 19 6 3.7321 -5.0814 -1.1882 20 6 2.8354 -4.0331 -1.1806 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3013 -1.8583 -1.1891 23 1 0.9638 -2.5269 -2.0367 24 1 2.0450 -3.9942 2.1028 25 1 3.6412 -5.8652 2.1138 26 1 6.2149 -7.9815 -1.0954 27 1 4.2034 -5.3838 -2.1116 28 1 2.6049 -3.5148 -2.0996 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095659486.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:29 Heat of formation + Delta-G solvation = -77.018297 kcal Electronic energy + Delta-G solvation = -14253.080901 eV Core-core repulsion = 11654.273271 eV Total energy + Delta-G solvation = -2598.807630 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.14228 -38.44850 -35.96573 -34.77559 -31.81428 -30.61507 -29.63333 -26.27054 -24.41035 -22.14869 -21.75944 -19.86923 -17.92753 -17.21389 -16.61160 -15.52027 -15.44739 -14.64968 -14.36139 -14.10338 -13.63235 -13.04096 -12.87799 -12.50435 -12.14271 -11.75546 -11.48351 -11.22972 -10.99452 -10.85701 -10.49119 -10.43776 -10.12289 -9.74552 -8.77508 -8.51092 -8.23559 -7.31882 -6.19746 -4.37402 1.16121 1.89132 2.88888 3.18559 3.20386 3.24113 3.27312 4.20702 4.37065 5.03078 5.20755 5.37627 5.42218 5.70295 5.91281 5.99972 6.35931 6.44841 6.46713 6.56189 6.74482 6.91963 7.00147 7.38089 7.60253 7.64271 7.95072 8.03427 8.53969 8.80189 8.99364 9.34959 10.78114 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.046631 B = 0.006496 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.314788 B = 4309.429377 C = 4412.058848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.068 3.932 3 Si 0.900 3.100 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.233 3.767 10 H 0.052 0.948 11 N -0.850 5.850 12 C 0.019 3.981 13 C -0.139 4.139 14 C -0.054 4.054 15 C -0.166 4.166 16 C 0.532 3.468 17 O -0.529 6.529 18 O -0.515 6.515 19 C -0.063 4.063 20 C -0.126 4.126 21 H 0.268 0.732 22 H 0.358 0.642 23 H 0.313 0.687 24 H 0.128 0.872 25 H 0.128 0.872 26 H 0.407 0.593 27 H 0.128 0.872 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.253 -8.232 -2.415 10.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.075 0.925 9 C 0.123 3.877 10 H 0.070 0.930 11 N -0.380 5.380 12 C 0.018 3.982 13 C -0.158 4.158 14 C -0.072 4.072 15 C -0.167 4.167 16 C 0.378 3.622 17 O -0.420 6.420 18 O -0.326 6.326 19 C -0.081 4.081 20 C -0.145 4.145 21 H 0.078 0.922 22 H 0.174 0.826 23 H 0.122 0.878 24 H 0.146 0.854 25 H 0.146 0.854 26 H 0.265 0.735 27 H 0.146 0.854 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 5.643 -8.651 -1.878 10.498 hybrid contribution 1.324 1.469 -0.104 1.980 sum 6.967 -7.182 -1.982 10.200 Atomic orbital electron populations 1.69726 1.05883 1.27572 1.49836 1.25017 0.94970 0.99403 0.94092 0.86522 0.79542 0.82338 0.78863 1.20124 1.21116 1.20054 1.21721 0.93669 0.90715 1.52677 0.92452 1.18143 0.89170 0.88146 0.92276 0.92994 1.59552 1.18384 1.56231 1.03832 1.20886 0.92687 0.92718 0.91873 1.21037 0.99622 0.96233 0.98888 1.21115 0.94035 0.95554 0.96493 1.18800 1.02825 0.99123 0.95966 1.21121 0.78560 0.82201 0.80296 1.90835 1.62523 1.55175 1.33433 1.84600 1.57378 1.53422 1.37213 1.21348 0.95773 0.94329 0.96677 1.20977 0.97256 0.97173 0.99064 0.92221 0.82576 0.87779 0.85377 0.85446 0.73496 0.85443 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.64 11.54 55.43 0.64 -23.00 15 2 C 0.07 1.77 5.38 -17.82 -0.10 1.67 15 3 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 15 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 15 7 C -0.55 -14.07 8.70 -34.44 -0.30 -14.37 15 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 15 9 C 0.23 5.49 2.95 -70.02 -0.21 5.28 15 10 H 0.05 1.34 8.00 -51.93 -0.42 0.93 15 11 N -0.85 -19.22 9.01 -6.65 -0.06 -19.28 15 12 C 0.02 0.39 4.90 -104.53 -0.51 -0.12 15 13 C -0.14 -2.60 9.65 -39.64 -0.38 -2.98 15 14 C -0.05 -0.92 9.60 -39.17 -0.38 -1.29 15 15 C -0.17 -2.77 5.87 -104.98 -0.62 -3.39 15 16 C 0.53 8.18 8.27 34.61 0.29 8.46 15 17 O -0.53 -9.25 17.13 -19.24 -0.33 -9.58 15 18 O -0.51 -6.03 12.68 -40.52 -0.51 -6.55 15 19 C -0.06 -1.03 9.62 -39.17 -0.38 -1.40 15 20 C -0.13 -2.32 9.27 -39.64 -0.37 -2.69 15 21 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 22 H 0.36 8.70 7.08 -39.29 -0.28 8.42 15 23 H 0.31 6.63 7.32 -39.29 -0.29 6.34 15 24 H 0.13 2.24 8.03 -52.49 -0.42 1.82 15 25 H 0.13 2.00 7.65 -52.49 -0.40 1.60 15 26 H 0.41 2.72 9.11 45.56 0.42 3.13 15 27 H 0.13 1.77 7.61 -52.49 -0.40 1.37 15 28 H 0.13 2.25 6.64 -52.48 -0.35 1.90 15 LS Contribution 252.92 15.07 3.81 3.81 Total: -1.00 -28.57 252.92 -6.10 -34.67 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -1.68 Total: 15.48 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -2.95 Total: -10.82 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.58 Total: -42.27 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.84 Total: -16.13 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.57 -6.10 -34.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659486.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.345 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds