Wall clock time and date at job start Mon Mar 30 2020 03:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99865 * 2 1 4 4 H 1.48500 * 109.46683 * 239.99731 * 3 2 1 5 5 H 1.48493 * 109.47038 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47059 * 120.00133 * 3 2 1 7 7 C 1.37879 * 120.00280 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00222 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99814 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.46953 * 300.00698 * 9 7 2 11 11 N 1.46899 * 109.46819 * 60.00267 * 9 7 2 12 12 C 1.50693 * 109.47225 * 179.97438 * 9 7 2 13 13 C 1.38372 * 119.84551 * 99.99737 * 12 9 7 14 14 C 1.37947 * 120.14939 * 179.97438 * 13 12 9 15 15 C 1.39626 * 119.84448 * 0.26453 * 14 13 12 16 16 C 1.47733 * 120.14537 * 179.74100 * 15 14 13 17 17 O 1.21467 * 120.00108 * 359.97438 * 16 15 14 18 18 O 1.34709 * 119.99593 * 179.97438 * 16 15 14 19 19 C 1.39629 * 119.70461 * 359.48690 * 15 14 13 20 20 C 1.37944 * 119.84175 * 0.53069 * 19 15 14 21 21 H 0.96996 * 119.99960 * 0.02562 * 1 2 3 22 22 H 1.00905 * 111.00047 * 296.03943 * 11 9 7 23 23 H 1.00895 * 111.00518 * 59.99936 * 11 9 7 24 24 H 1.07999 * 119.92634 * 359.97438 * 13 12 9 25 25 H 1.08002 * 120.07327 * 179.97438 * 14 13 12 26 26 H 0.96704 * 116.99620 * 179.97438 * 18 16 15 27 27 H 1.07997 * 120.07773 * 180.25040 * 19 15 14 28 28 H 1.08003 * 119.91758 * 179.72138 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 7 0.4062 -2.5778 -1.1974 12 6 2.2304 -3.6446 0.0015 13 6 2.5204 -4.3029 1.1835 14 6 3.4154 -5.3525 1.1904 15 6 4.0333 -5.7466 0.0019 16 6 4.9972 -6.8662 0.0027 17 8 5.2541 -7.4457 1.0388 18 8 5.5912 -7.2442 -1.1458 19 6 3.7321 -5.0814 -1.1882 20 6 2.8354 -4.0331 -1.1806 21 1 -0.4850 0.8400 -0.0004 22 1 -0.3013 -1.8583 -1.1891 23 1 0.9638 -2.5269 -2.0367 24 1 2.0450 -3.9942 2.1028 25 1 3.6412 -5.8652 2.1138 26 1 6.2149 -7.9815 -1.0954 27 1 4.2034 -5.3838 -2.1116 28 1 2.6049 -3.5148 -2.0996 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095659486.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:28 Heat of formation + Delta-G solvation = -96.727002 kcal Electronic energy + Delta-G solvation = -14253.935534 eV Core-core repulsion = 11654.273271 eV Total energy + Delta-G solvation = -2599.662263 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.35956 -39.83707 -37.07602 -36.53105 -33.64188 -32.01562 -31.19305 -28.12130 -25.95508 -23.52850 -23.24290 -21.35536 -19.08844 -18.57844 -18.46083 -17.17607 -16.60454 -16.35131 -15.86469 -15.53382 -15.02803 -14.86354 -14.22668 -13.95299 -13.63357 -13.44827 -13.03870 -12.80260 -12.61993 -12.54355 -12.02160 -11.86859 -11.80456 -11.43424 -10.72771 -9.88354 -9.73949 -9.19551 -8.14073 -6.40080 -0.18814 0.50822 1.39677 1.41035 1.48485 1.61335 2.12007 2.36413 2.92787 3.04955 3.90071 4.07748 4.11418 4.23017 4.54177 4.62219 4.72321 4.94646 5.07285 5.27004 5.35043 5.49446 5.59236 5.63537 5.85449 5.99739 6.07250 6.61261 6.89108 7.01552 7.10636 7.36630 8.80482 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.046631 B = 0.006496 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.314788 B = 4309.429377 C = 4412.058848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.025 3.975 3 Si 0.959 3.041 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.276 1.276 7 C -0.561 4.561 8 H 0.050 0.950 9 C 0.236 3.764 10 H 0.018 0.982 11 N -0.842 5.842 12 C -0.009 4.009 13 C -0.148 4.148 14 C -0.053 4.053 15 C -0.168 4.168 16 C 0.542 3.458 17 O -0.552 6.552 18 O -0.502 6.502 19 C -0.050 4.050 20 C -0.132 4.132 21 H 0.269 0.731 22 H 0.347 0.653 23 H 0.321 0.679 24 H 0.128 0.872 25 H 0.141 0.859 26 H 0.432 0.568 27 H 0.159 0.841 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.862 -8.996 -3.283 12.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.068 0.932 9 C 0.126 3.874 10 H 0.036 0.964 11 N -0.372 5.372 12 C -0.010 4.010 13 C -0.166 4.166 14 C -0.071 4.071 15 C -0.169 4.169 16 C 0.389 3.611 17 O -0.445 6.445 18 O -0.315 6.315 19 C -0.068 4.068 20 C -0.150 4.150 21 H 0.078 0.922 22 H 0.162 0.838 23 H 0.132 0.868 24 H 0.146 0.854 25 H 0.159 0.841 26 H 0.294 0.706 27 H 0.176 0.824 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.279 -9.443 -2.770 12.241 hybrid contribution 0.876 1.599 0.134 1.828 sum 8.155 -7.845 -2.636 11.619 Atomic orbital electron populations 1.69824 1.06918 1.28195 1.50368 1.25710 0.95711 1.02264 0.93861 0.85601 0.78367 0.78851 0.78755 1.19567 1.20783 1.20135 1.21948 0.93414 0.92039 1.52606 0.93209 1.17936 0.89213 0.89091 0.91181 0.96364 1.59507 1.18133 1.55478 1.04040 1.20693 0.93645 0.93051 0.93617 1.21076 1.00254 0.96831 0.98451 1.21230 0.93425 0.94895 0.97540 1.19063 1.02616 0.99372 0.95831 1.20751 0.78186 0.81488 0.80702 1.90841 1.63273 1.55832 1.34528 1.84527 1.57523 1.54439 1.35036 1.21567 0.94556 0.92916 0.97749 1.21045 0.97694 0.97961 0.98339 0.92196 0.83814 0.86847 0.85377 0.84148 0.70556 0.82388 0.85057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.08 11.54 21.45 0.25 -48.83 15 2 C 0.03 1.32 5.38 84.65 0.46 1.77 15 3 Si 0.96 41.55 29.54 68.60 2.03 43.58 15 4 H -0.27 -11.42 7.11 99.48 0.71 -10.72 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 15 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 15 7 C -0.56 -29.13 8.70 25.60 0.22 -28.91 15 8 H 0.05 2.61 7.74 -2.91 -0.02 2.58 15 9 C 0.24 11.41 2.95 43.42 0.13 11.54 15 10 H 0.02 0.99 8.00 -2.39 -0.02 0.97 15 11 N -0.84 -38.66 9.01 -174.95 -1.58 -40.24 15 12 C -0.01 -0.38 4.90 -19.81 -0.10 -0.48 15 13 C -0.15 -5.51 9.65 22.23 0.21 -5.29 15 14 C -0.05 -1.74 9.60 22.54 0.22 -1.52 15 15 C -0.17 -5.19 5.87 -20.10 -0.12 -5.30 15 16 C 0.54 14.96 8.27 70.33 0.58 15.54 15 17 O -0.55 -17.88 17.13 19.94 0.34 -17.54 15 18 O -0.50 -9.66 12.68 -56.19 -0.71 -10.37 15 19 C -0.05 -1.49 9.62 22.54 0.22 -1.27 15 20 C -0.13 -4.70 9.27 22.23 0.21 -4.49 15 21 H 0.27 13.79 8.31 -92.71 -0.77 13.02 15 22 H 0.35 17.23 7.08 -89.69 -0.63 16.60 15 23 H 0.32 13.64 7.32 -89.70 -0.66 12.98 15 24 H 0.13 4.62 8.03 -2.91 -0.02 4.59 15 25 H 0.14 4.21 7.65 -2.91 -0.02 4.19 15 26 H 0.43 3.89 9.11 -74.05 -0.67 3.21 15 27 H 0.16 3.73 7.61 -2.91 -0.02 3.70 15 28 H 0.13 4.48 6.64 -2.91 -0.02 4.46 15 Total: -1.00 -60.34 252.92 1.61 -58.74 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.74 Total: 33.09 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 2.03 Total: -18.43 kcal Atomic # 7 Polarization: -87.74 SS G_CDS: -1.33 Total: -89.07 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.37 Total: -27.91 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -60.34 1.61 -58.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095659486.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.990 kcal (2) G-P(sol) polarization free energy of solvation -60.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds