Wall clock time and date at job start Mon Mar 30 2020 03:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48501 * 109.47028 * 269.99660 * 3 2 1 5 5 H 1.48495 * 109.47602 * 30.00061 * 3 2 1 6 6 H 1.48500 * 109.47114 * 149.99982 * 3 2 1 7 7 C 1.38919 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00140 * 162.19733 * 7 2 1 9 9 N 1.37490 * 120.00078 * 342.20355 * 7 2 1 10 10 C 1.35848 * 123.24729 * 328.98569 * 9 7 2 11 11 O 1.21212 * 126.88066 * 347.55730 * 10 9 7 12 12 C 1.49870 * 106.23532 * 167.56031 * 10 9 7 13 13 H 1.08995 * 110.97420 * 273.55429 * 12 10 9 14 14 C 1.51426 * 118.25367 * 144.61857 * 12 10 9 15 15 C 1.51431 * 106.90244 * 194.16194 * 14 12 10 16 16 C 1.29871 * 124.37055 * 18.46051 * 15 14 12 17 17 C 1.51426 * 124.36199 * 0.69105 * 16 15 14 18 18 C 1.51421 * 106.82964 * 18.66343 * 17 16 15 19 19 H 1.08998 * 110.32309 * 64.69904 * 18 17 16 20 20 C 1.35849 * 123.25620 * 148.96758 * 9 7 2 21 21 O 1.21220 * 126.87625 * 347.60847 * 20 9 7 22 22 H 0.96998 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.96509 * 74.81400 * 14 12 10 24 24 H 1.09005 * 109.96873 * 313.50973 * 14 12 10 25 25 H 1.07999 * 117.81407 * 198.17939 * 15 14 12 26 26 H 1.08005 * 117.82456 * 180.92348 * 16 15 14 27 27 H 1.09004 * 110.15413 * 259.25611 * 17 16 15 28 28 H 1.09003 * 109.92585 * 137.94296 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5450 1.4403 0.7000 7 6 2.0082 -1.2030 0.0005 8 1 3.0494 -1.2255 -0.2854 9 7 1.3702 -2.3651 0.3650 10 6 0.3564 -2.4064 1.2683 11 8 0.0141 -1.5182 2.0187 12 6 -0.2539 -3.7702 1.1512 13 1 -1.0139 -3.7918 0.3702 14 6 -0.7734 -4.4335 2.4094 15 6 -0.9968 -5.8939 2.0772 16 6 -0.4676 -6.5037 1.0600 17 6 0.4644 -5.8497 0.0617 18 6 0.9982 -4.5938 0.7178 19 1 1.6060 -4.8491 1.5858 20 6 1.6923 -3.5829 -0.1437 21 8 2.3998 -3.8069 -1.1022 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7136 -3.9726 2.7120 24 1 -0.0385 -4.3419 3.2092 25 1 -1.6355 -6.4678 2.7323 26 1 -0.7112 -7.5458 0.9143 27 1 -0.0795 -5.5924 -0.8473 28 1 1.2872 -6.5242 -0.1755 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103031114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:33 Heat of formation + Delta-G solvation = -41.349836 kcal Electronic energy + Delta-G solvation = -15286.401004 eV Core-core repulsion = 12689.140075 eV Total energy + Delta-G solvation = -2597.260929 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.98255 -37.13452 -37.00373 -34.33458 -32.63446 -30.46632 -30.28598 -25.74964 -24.10769 -22.88653 -20.69288 -19.17422 -18.10318 -17.16733 -16.16483 -15.52352 -14.92644 -14.37706 -14.10602 -13.84105 -13.67576 -13.18642 -12.82076 -12.51737 -12.22434 -11.98738 -11.67617 -11.08282 -10.93171 -10.75360 -10.69420 -10.49845 -10.27372 -9.47788 -8.96264 -8.88100 -8.60124 -7.92884 -6.47064 -4.19525 2.40804 2.81563 3.18357 3.25288 3.30168 3.92630 4.06920 4.50412 4.53645 4.88674 4.98757 5.24298 5.39356 5.53059 5.59825 5.67235 5.72916 5.79212 6.06441 6.14410 6.21205 6.27480 6.50146 6.74212 7.05166 7.38609 7.83357 8.03726 8.71421 8.84279 9.14713 9.74042 10.63076 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.010276 C = 0.008801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.343283 B = 2724.049083 C = 3180.721935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.058 3.942 3 Si 0.930 3.070 4 H -0.275 1.275 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.362 4.362 8 H 0.099 0.901 9 N -0.419 5.419 10 C 0.523 3.477 11 O -0.469 6.469 12 C -0.130 4.130 13 H 0.107 0.893 14 C -0.067 4.067 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.066 4.066 18 C -0.133 4.133 19 H 0.107 0.893 20 C 0.500 3.500 21 O -0.517 6.517 22 H 0.274 0.726 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.081 0.919 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -9.235 3.491 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.153 4.153 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.487 4.487 8 H 0.117 0.883 9 N -0.150 5.150 10 C 0.312 3.688 11 O -0.340 6.340 12 C -0.152 4.152 13 H 0.125 0.875 14 C -0.104 4.104 15 C -0.172 4.172 16 C -0.174 4.174 17 C -0.103 4.103 18 C -0.155 4.155 19 H 0.125 0.875 20 C 0.291 3.709 21 O -0.394 6.394 22 H 0.085 0.915 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.099 0.901 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.301 -8.700 3.410 9.624 hybrid contribution 0.203 0.786 -0.086 0.817 sum -2.097 -7.914 3.323 8.836 Atomic orbital electron populations 1.69814 1.06574 1.28729 1.41684 1.25341 0.95209 1.00281 0.94432 0.85915 0.79603 0.80600 0.78381 1.20123 1.20490 1.19094 1.19474 0.95862 0.83236 1.50175 0.88312 1.43323 1.31440 1.07743 1.32499 1.19898 0.81627 0.87700 0.79587 1.90526 1.63459 1.43138 1.36887 1.22125 0.97793 0.94628 1.00677 0.87475 1.20208 1.02033 0.91815 0.96347 1.22475 1.00238 0.96163 0.98299 1.22446 0.98830 0.99458 0.96662 1.20197 0.97994 0.94819 0.97315 1.22084 0.97028 0.95766 1.00599 0.87543 1.20406 0.82291 0.84688 0.83544 1.90554 1.38918 1.83547 1.26381 0.91526 0.90017 0.90208 0.87766 0.87755 0.90077 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.16 11.18 55.49 0.62 -23.54 15 2 C 0.06 1.62 4.83 -17.50 -0.08 1.54 15 3 Si 0.93 21.39 29.59 -169.99 -5.03 16.36 15 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.36 -10.31 9.57 -14.76 -0.14 -10.45 15 8 H 0.10 2.78 7.89 -52.49 -0.41 2.36 15 9 N -0.42 -11.07 2.77 -60.68 -0.17 -11.24 15 10 C 0.52 12.99 6.65 -10.90 -0.07 12.92 15 11 O -0.47 -13.02 15.72 5.62 0.09 -12.94 15 12 C -0.13 -2.47 2.56 -91.36 -0.23 -2.71 15 13 H 0.11 2.03 7.97 -51.93 -0.41 1.62 15 14 C -0.07 -1.00 5.83 -28.32 -0.17 -1.17 15 15 C -0.15 -1.92 9.77 -35.35 -0.35 -2.27 15 16 C -0.16 -1.93 9.77 -35.35 -0.35 -2.28 15 17 C -0.07 -0.96 5.83 -28.32 -0.17 -1.13 15 18 C -0.13 -2.41 2.56 -91.37 -0.23 -2.64 15 19 H 0.11 1.77 7.97 -51.93 -0.41 1.36 15 20 C 0.50 11.85 7.63 -10.91 -0.08 11.76 15 21 O -0.52 -13.41 17.80 5.61 0.10 -13.31 15 22 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 23 H 0.08 1.19 8.14 -51.93 -0.42 0.76 15 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.10 1.07 8.06 -52.49 -0.42 0.65 15 26 H 0.10 1.06 8.06 -52.48 -0.42 0.63 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 15 LS Contribution 244.21 15.07 3.68 3.68 Total: -1.00 -32.50 244.21 -5.49 -38.00 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -2.91 Total: -0.58 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.87 Total: 3.58 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.45 Total: -34.78 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: 0.19 Total: -26.25 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -32.50 -5.49 -38.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103031114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.354 kcal (2) G-P(sol) polarization free energy of solvation -32.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds