Wall clock time and date at job start Mon Mar 30 2020 03:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31356 * 1 3 3 Si 1.86801 * 119.99694 * 2 1 4 4 H 1.48501 * 109.47028 * 269.99660 * 3 2 1 5 5 H 1.48495 * 109.47602 * 30.00061 * 3 2 1 6 6 H 1.48500 * 109.47114 * 149.99982 * 3 2 1 7 7 C 1.38919 * 120.00300 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00140 * 162.19733 * 7 2 1 9 9 N 1.37490 * 120.00078 * 342.20355 * 7 2 1 10 10 C 1.35848 * 123.24729 * 328.98569 * 9 7 2 11 11 O 1.21212 * 126.88066 * 347.55730 * 10 9 7 12 12 C 1.49870 * 106.23532 * 167.56031 * 10 9 7 13 13 H 1.08995 * 110.97420 * 273.55429 * 12 10 9 14 14 C 1.51426 * 118.25367 * 144.61857 * 12 10 9 15 15 C 1.51431 * 106.90244 * 194.16194 * 14 12 10 16 16 C 1.29871 * 124.37055 * 18.46051 * 15 14 12 17 17 C 1.51426 * 124.36199 * 0.69105 * 16 15 14 18 18 C 1.51421 * 106.82964 * 18.66343 * 17 16 15 19 19 H 1.08998 * 110.32309 * 64.69904 * 18 17 16 20 20 C 1.35849 * 123.25620 * 148.96758 * 9 7 2 21 21 O 1.21220 * 126.87625 * 347.60847 * 20 9 7 22 22 H 0.96998 * 120.00382 * 0.02562 * 1 2 3 23 23 H 1.08995 * 109.96509 * 74.81400 * 14 12 10 24 24 H 1.09005 * 109.96873 * 313.50973 * 14 12 10 25 25 H 1.07999 * 117.81407 * 198.17939 * 15 14 12 26 26 H 1.08005 * 117.82456 * 180.92348 * 16 15 14 27 27 H 1.09004 * 110.15413 * 259.25611 * 17 16 15 28 28 H 1.09003 * 109.92585 * 137.94296 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6178 0.0000 4 1 2.4950 2.0464 -1.4001 5 1 1.4450 2.6527 0.7000 6 1 3.5450 1.4403 0.7000 7 6 2.0082 -1.2030 0.0005 8 1 3.0494 -1.2255 -0.2854 9 7 1.3702 -2.3651 0.3650 10 6 0.3564 -2.4064 1.2683 11 8 0.0141 -1.5182 2.0187 12 6 -0.2539 -3.7702 1.1512 13 1 -1.0139 -3.7918 0.3702 14 6 -0.7734 -4.4335 2.4094 15 6 -0.9968 -5.8939 2.0772 16 6 -0.4676 -6.5037 1.0600 17 6 0.4644 -5.8497 0.0617 18 6 0.9982 -4.5938 0.7178 19 1 1.6060 -4.8491 1.5858 20 6 1.6923 -3.5829 -0.1437 21 8 2.3998 -3.8069 -1.1022 22 1 -0.4850 0.8400 -0.0004 23 1 -1.7136 -3.9726 2.7120 24 1 -0.0385 -4.3419 3.2092 25 1 -1.6355 -6.4678 2.7323 26 1 -0.7112 -7.5458 0.9143 27 1 -0.0795 -5.5924 -0.8473 28 1 1.2872 -6.5242 -0.1755 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103031114.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:32 Heat of formation + Delta-G solvation = -63.008397 kcal Electronic energy + Delta-G solvation = -15287.340190 eV Core-core repulsion = 12689.140075 eV Total energy + Delta-G solvation = -2598.200115 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.73187 -39.00255 -38.57473 -36.36054 -34.55186 -31.86542 -31.71163 -27.60017 -25.78845 -24.40858 -22.37314 -20.94887 -19.36506 -19.11923 -17.93562 -17.18233 -16.74106 -16.11431 -15.89852 -15.58471 -15.25081 -14.70784 -14.29131 -13.91674 -13.76039 -13.64898 -13.36035 -12.94252 -12.91827 -12.30042 -12.21480 -11.90429 -11.78401 -11.46705 -10.78360 -10.52239 -9.99813 -9.85136 -8.58049 -6.38903 0.90855 1.32188 1.37320 1.46542 1.49648 2.03623 2.20664 2.65002 3.00290 3.05859 3.58906 3.64565 4.07264 4.19356 4.25091 4.32040 4.45582 4.49388 4.91850 4.96457 4.97754 5.10163 5.19784 5.25047 5.76572 5.77876 6.03029 6.07605 6.63179 6.91424 7.07785 7.72256 8.52470 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045492 B = 0.010276 C = 0.008801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.343283 B = 2724.049083 C = 3180.721935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.012 3.988 3 Si 0.997 3.003 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.398 4.398 8 H 0.089 0.911 9 N -0.445 5.445 10 C 0.512 3.488 11 O -0.509 6.509 12 C -0.119 4.119 13 H 0.108 0.892 14 C -0.065 4.065 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.066 4.066 18 C -0.117 4.117 19 H 0.127 0.873 20 C 0.493 3.507 21 O -0.546 6.546 22 H 0.276 0.724 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.138 0.862 26 H 0.140 0.860 27 H 0.074 0.926 28 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 -10.994 4.198 12.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.195 4.195 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.524 4.524 8 H 0.106 0.894 9 N -0.176 5.176 10 C 0.304 3.696 11 O -0.383 6.383 12 C -0.141 4.141 13 H 0.126 0.874 14 C -0.102 4.102 15 C -0.169 4.169 16 C -0.168 4.168 17 C -0.103 4.103 18 C -0.138 4.138 19 H 0.145 0.855 20 C 0.286 3.714 21 O -0.426 6.426 22 H 0.086 0.914 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.156 0.844 26 H 0.157 0.843 27 H 0.093 0.907 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.802 -10.493 4.110 11.613 hybrid contribution 0.397 1.314 -0.348 1.416 sum -2.405 -9.179 3.762 10.208 Atomic orbital electron populations 1.69892 1.07997 1.29601 1.42735 1.26335 0.96084 1.03650 0.93476 0.84917 0.78340 0.75904 0.79041 1.18724 1.19882 1.18447 1.19699 0.96028 0.85064 1.51567 0.89357 1.43740 1.32308 1.08212 1.33364 1.20870 0.80948 0.89527 0.78277 1.90475 1.64300 1.45159 1.38344 1.22098 0.97949 0.90950 1.03087 0.87443 1.20270 1.02151 0.93560 0.94213 1.22519 1.00920 0.94290 0.99169 1.22519 0.97814 1.00887 0.95587 1.20289 0.99101 0.93208 0.97697 1.22122 0.95851 0.95812 1.00018 0.85497 1.21357 0.81372 0.85319 0.83378 1.90517 1.40119 1.84092 1.27846 0.91396 0.89543 0.89902 0.84394 0.84260 0.90713 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -51.65 11.18 21.65 0.24 -51.40 15 2 C 0.01 0.67 4.83 84.93 0.41 1.08 15 3 Si 1.00 44.62 29.59 68.60 2.03 46.65 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.90 7.11 99.48 0.71 -11.19 15 6 H -0.26 -11.26 7.11 99.48 0.71 -10.56 15 7 C -0.40 -23.47 9.57 83.97 0.80 -22.67 15 8 H 0.09 5.19 7.89 -2.91 -0.02 5.17 15 9 N -0.44 -24.15 2.77 -581.49 -1.61 -25.76 15 10 C 0.51 25.95 6.65 87.23 0.58 26.53 15 11 O -0.51 -29.06 15.72 -2.82 -0.04 -29.11 15 12 C -0.12 -4.41 2.56 -11.27 -0.03 -4.44 15 13 H 0.11 3.99 7.97 -2.39 -0.02 3.97 15 14 C -0.06 -1.77 5.83 29.57 0.17 -1.60 15 15 C -0.15 -3.08 9.77 27.04 0.26 -2.82 15 16 C -0.15 -3.00 9.77 27.04 0.26 -2.74 15 17 C -0.07 -1.72 5.83 29.56 0.17 -1.55 15 18 C -0.12 -4.05 2.56 -11.28 -0.03 -4.08 15 19 H 0.13 3.92 7.97 -2.39 -0.02 3.91 15 20 C 0.49 23.63 7.63 87.22 0.67 24.30 15 21 O -0.55 -28.89 17.80 -2.84 -0.05 -28.95 15 22 H 0.28 15.44 8.31 -92.71 -0.77 14.67 15 23 H 0.09 2.31 8.14 -2.39 -0.02 2.29 15 24 H 0.08 2.24 8.14 -2.38 -0.02 2.22 15 25 H 0.14 2.02 8.06 -2.91 -0.02 2.00 15 26 H 0.14 1.96 8.06 -2.91 -0.02 1.93 15 27 H 0.07 2.08 8.14 -2.38 -0.02 2.06 15 28 H 0.10 2.26 8.14 -2.39 -0.02 2.24 15 Total: -1.00 -73.24 244.21 5.01 -68.23 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: 1.16 Total: 8.32 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 3.28 Total: 12.02 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -1.37 Total: -77.16 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -0.09 Total: -58.05 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -73.24 5.01 -68.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103031114.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.224 kcal (2) G-P(sol) polarization free energy of solvation -73.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds