Wall clock time and date at job start Mon Mar 30 2020 03:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31361 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48497 * 109.47069 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46541 * 120.00323 * 3 2 1 6 6 H 1.48493 * 109.47205 * 240.00335 * 3 2 1 7 7 C 1.38918 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99835 * 202.98477 * 7 2 1 9 9 N 1.37496 * 120.00422 * 22.98777 * 7 2 1 10 10 C 1.35838 * 123.25133 * 212.21943 * 9 7 2 11 11 O 1.21222 * 126.88375 * 12.38757 * 10 9 7 12 12 C 1.49737 * 106.29896 * 192.29063 * 10 9 7 13 13 H 1.09007 * 110.13902 * 86.50097 * 12 10 9 14 14 C 1.51419 * 118.41245 * 215.55749 * 12 10 9 15 15 C 1.51437 * 106.89347 * 166.09863 * 14 12 10 16 16 C 1.29876 * 124.35580 * 341.77558 * 15 14 12 17 17 C 1.51433 * 124.36566 * 358.79452 * 16 15 14 18 18 C 1.51426 * 106.90392 * 341.79857 * 17 16 15 19 19 H 1.08995 * 110.90749 * 294.75477 * 18 17 16 20 20 C 1.35840 * 123.24949 * 32.50784 * 9 7 2 21 21 O 1.21225 * 126.88323 * 12.38280 * 20 9 7 22 22 H 0.97004 * 119.99732 * 185.78526 * 1 2 3 23 23 H 1.09003 * 109.96789 * 285.44325 * 14 12 10 24 24 H 1.08998 * 109.96982 * 46.74869 * 14 12 10 25 25 H 1.08001 * 117.81925 * 161.74978 * 15 14 12 26 26 H 1.07997 * 117.81815 * 178.82103 * 16 15 14 27 27 H 1.09005 * 109.96956 * 222.44993 * 17 16 15 28 28 H 1.08999 * 109.96977 * 101.14627 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2476 1.6178 0.0000 4 1 1.2826 2.7464 0.0006 5 1 3.1014 1.6963 1.2125 6 1 3.1012 1.6965 -1.2125 7 6 2.0082 -1.2031 -0.0005 8 1 3.0239 -1.2404 0.3647 9 7 1.4026 -2.3464 -0.4661 10 6 1.6691 -3.5839 0.0267 11 8 2.2805 -3.8475 1.0397 12 6 1.0546 -4.5583 -0.9298 13 1 1.7510 -4.7803 -1.7385 14 6 0.4503 -5.8304 -0.3735 15 6 -0.3850 -6.4410 -1.4793 16 6 -0.8019 -5.7940 -2.5254 17 6 -0.5375 -4.3255 -2.7837 18 6 -0.1428 -3.7093 -1.4580 19 1 -0.9729 -3.7398 -0.7524 20 6 0.4844 -2.3482 -1.4671 21 8 0.2238 -1.4320 -2.2170 22 1 -0.4850 -0.8358 0.0847 23 1 1.2410 -6.5207 -0.0798 24 1 -0.1805 -5.5985 0.4847 25 1 -0.6513 -7.4841 -1.3924 26 1 -1.3757 -6.3395 -3.2598 27 1 -1.4399 -3.8459 -3.1630 28 1 0.2744 -4.2142 -3.5023 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103031119.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:35 Heat of formation + Delta-G solvation = -68.109642 kcal Electronic energy + Delta-G solvation = -15331.712278 eV Core-core repulsion = 12733.290957 eV Total energy + Delta-G solvation = -2598.421321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.99167 -39.28089 -38.74073 -36.64143 -34.65585 -31.84236 -31.80754 -27.39271 -25.98075 -24.45233 -22.53371 -21.22789 -19.61920 -19.46533 -17.96650 -17.53030 -16.63360 -16.41569 -15.79883 -15.69790 -15.45982 -14.85609 -14.35805 -14.26851 -13.95949 -13.83337 -13.31863 -12.84702 -12.56324 -12.32457 -12.00870 -11.99020 -11.78935 -11.44993 -10.90164 -10.64610 -10.32407 -9.92594 -9.05353 -6.52200 0.65345 1.40221 1.44046 1.49369 1.75654 1.90991 2.16216 2.53931 2.88304 2.94162 3.43621 3.47180 3.92339 4.07082 4.12943 4.20288 4.35524 4.38669 4.83016 4.87332 4.88149 5.02632 5.16284 5.35004 5.55061 5.71789 6.00883 6.09868 6.24579 6.66776 6.96416 7.45117 8.26717 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.045347 B = 0.010328 C = 0.008886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.319059 B = 2710.383452 C = 3150.189911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C -0.011 4.011 3 Si 1.129 2.871 4 H -0.273 1.273 5 H -0.258 1.258 6 H -0.269 1.269 7 C -0.473 4.473 8 H 0.080 0.920 9 N -0.452 5.452 10 C 0.493 3.507 11 O -0.539 6.539 12 C -0.115 4.115 13 H 0.127 0.873 14 C -0.065 4.065 15 C -0.150 4.150 16 C -0.151 4.151 17 C -0.064 4.064 18 C -0.119 4.119 19 H 0.113 0.887 20 C 0.491 3.509 21 O -0.516 6.516 22 H 0.255 0.745 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.141 0.859 26 H 0.140 0.860 27 H 0.089 0.911 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.069 -11.698 -4.959 12.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.218 4.218 3 Si 0.946 3.054 4 H -0.198 1.198 5 H -0.183 1.183 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.098 0.902 9 N -0.184 5.184 10 C 0.286 3.714 11 O -0.418 6.418 12 C -0.136 4.136 13 H 0.145 0.855 14 C -0.102 4.102 15 C -0.167 4.167 16 C -0.169 4.169 17 C -0.102 4.102 18 C -0.140 4.140 19 H 0.131 0.869 20 C 0.283 3.717 21 O -0.391 6.391 22 H 0.065 0.935 23 H 0.116 0.884 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.158 0.842 27 H 0.107 0.893 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.106 -9.721 -4.894 11.085 hybrid contribution 0.284 -1.242 0.417 1.341 sum -1.822 -10.963 -4.477 11.981 Atomic orbital electron populations 1.70790 1.08147 1.30038 1.40208 1.28101 0.96007 1.06296 0.91358 0.82804 0.74282 0.69805 0.78475 1.19805 1.18251 1.19462 1.20553 1.00414 0.87996 1.50836 0.90164 1.43888 1.37285 1.08493 1.28725 1.21432 0.80089 0.84882 0.84957 1.90530 1.42414 1.82844 1.25965 1.22119 0.96883 0.96166 0.98472 0.85514 1.20292 0.99186 0.92979 0.97776 1.22524 0.98564 1.01022 0.94625 1.22509 1.01144 0.93892 0.99313 1.20274 1.02835 0.93995 0.93057 1.22141 0.98468 0.90191 1.03213 0.86875 1.21349 0.81260 0.90548 0.78516 1.90585 1.64226 1.43530 1.40801 0.93466 0.88377 0.90506 0.84094 0.84228 0.89277 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -52.85 12.33 21.65 0.27 -52.58 15 2 C -0.01 -0.65 4.68 84.93 0.40 -0.26 15 3 Si 1.13 50.52 29.98 68.60 2.06 52.58 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.26 -10.47 7.11 99.48 0.71 -9.76 15 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.47 -28.08 9.48 83.97 0.80 -27.29 15 8 H 0.08 4.80 7.93 -2.91 -0.02 4.78 15 9 N -0.45 -24.29 2.60 -581.63 -1.52 -25.81 15 10 C 0.49 23.38 7.63 87.19 0.67 24.04 15 11 O -0.54 -28.35 17.80 -2.85 -0.05 -28.40 15 12 C -0.12 -3.89 2.54 -11.32 -0.03 -3.92 15 13 H 0.13 3.87 7.99 -2.38 -0.02 3.85 15 14 C -0.06 -1.64 5.84 29.57 0.17 -1.46 15 15 C -0.15 -2.84 9.77 27.04 0.26 -2.57 15 16 C -0.15 -2.93 9.77 27.04 0.26 -2.66 15 17 C -0.06 -1.70 5.83 29.57 0.17 -1.53 15 18 C -0.12 -4.23 2.56 -11.27 -0.03 -4.26 15 19 H 0.11 3.94 7.99 -2.39 -0.02 3.93 15 20 C 0.49 24.38 5.88 87.23 0.51 24.90 15 21 O -0.52 -29.24 16.04 -2.86 -0.05 -29.28 15 22 H 0.26 15.94 6.95 -92.71 -0.64 15.29 15 23 H 0.10 2.21 8.14 -2.39 -0.02 2.19 15 24 H 0.08 2.03 8.14 -2.39 -0.02 2.01 15 25 H 0.14 1.85 8.06 -2.91 -0.02 1.83 15 26 H 0.14 1.92 8.06 -2.91 -0.02 1.90 15 27 H 0.09 2.28 8.14 -2.38 -0.02 2.26 15 28 H 0.08 2.18 8.14 -2.39 -0.02 2.16 15 Total: -1.00 -75.31 243.59 5.19 -70.13 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.29 Total: 8.38 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: 3.19 Total: 4.99 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.25 Total: -78.39 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -0.10 Total: -57.68 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 2.06 Total: 52.58 kcal Total: -75.31 5.19 -70.13 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103031119.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.015 kcal (2) G-P(sol) polarization free energy of solvation -75.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds