Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86801 * 119.99764 * 2 1 4 4 H 1.48503 * 109.47044 * 275.40659 * 3 2 1 5 5 H 1.48496 * 109.47480 * 35.40682 * 3 2 1 6 6 H 1.48503 * 109.47185 * 155.40888 * 3 2 1 7 7 C 1.39944 * 120.00407 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99688 * 341.74632 * 7 2 1 9 9 C 1.41398 * 120.00143 * 161.73638 * 7 2 1 10 10 C 1.40732 * 120.24542 * 330.21327 * 9 7 2 11 11 C 1.37594 * 119.74437 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.25028 * 359.72763 * 11 10 9 13 13 C 1.38621 * 120.49705 * 0.54918 * 12 11 10 14 14 C 1.50699 * 119.87063 * 179.71911 * 13 12 11 15 15 H 1.08998 * 109.47016 * 199.72427 * 14 13 12 16 16 N 1.46895 * 109.47451 * 319.73298 * 14 13 12 17 17 C 1.50706 * 109.46673 * 79.73482 * 14 13 12 18 18 O 1.20831 * 119.99645 * 259.99567 * 17 14 13 19 19 O 1.34222 * 120.00414 * 79.99679 * 17 14 13 20 20 C 1.37640 * 120.24725 * 359.45025 * 13 12 11 21 21 H 0.96999 * 119.99802 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.12402 * 0.04347 * 10 9 7 23 23 H 1.07999 * 119.87239 * 180.02562 * 11 10 9 24 24 H 1.07994 * 119.75035 * 180.29392 * 12 11 10 25 25 H 1.00904 * 110.99995 * 296.04524 * 16 14 13 26 26 H 1.00894 * 111.00143 * 60.00007 * 16 14 13 27 27 H 0.96701 * 117.00596 * 180.02562 * 19 17 14 28 28 H 1.07994 * 120.12304 * 180.29286 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3754 2.1124 -1.3939 5 1 1.5015 2.6170 0.8111 6 1 3.5923 1.4100 0.5826 7 6 2.0081 -1.2119 0.0005 8 1 1.5089 -2.1235 0.2939 9 6 3.3686 -1.2429 -0.3832 10 6 3.8638 -0.3115 -1.3149 11 6 5.1894 -0.3513 -1.6814 12 6 6.0377 -1.3007 -1.1322 13 6 5.5596 -2.2266 -0.2179 14 6 6.4927 -3.2562 0.3653 15 1 5.9120 -4.0866 0.7670 16 7 7.3937 -3.7510 -0.6841 17 6 7.3042 -2.6301 1.4701 18 8 8.4376 -2.2692 1.2571 19 8 6.7682 -2.4733 2.6906 20 6 4.2372 -2.2054 0.1632 21 1 -0.4850 0.8401 -0.0004 22 1 3.2057 0.4318 -1.7403 23 1 5.5716 0.3626 -2.3958 24 1 7.0778 -1.3217 -1.4220 25 1 6.8783 -4.2324 -1.4057 26 1 7.9434 -2.9994 -1.0726 27 1 7.3271 -2.0664 3.3667 28 1 3.8680 -2.9246 0.8792 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104498355.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = -99.940229 kcal Electronic energy + Delta-G solvation = -14604.631110 eV Core-core repulsion = 12004.829510 eV Total energy + Delta-G solvation = -2599.801599 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45428 -39.73545 -37.23900 -36.30532 -35.04321 -32.18223 -31.29052 -27.56659 -27.06919 -23.50814 -22.63260 -21.60405 -19.43416 -18.98081 -18.01865 -17.80678 -16.75483 -16.52684 -15.96732 -15.68352 -15.23277 -14.90993 -14.56373 -14.20919 -13.88105 -13.45665 -13.16627 -12.81640 -12.65584 -12.49931 -12.29152 -11.84177 -11.62512 -11.47831 -11.07280 -9.99891 -9.59289 -9.41633 -8.92992 -6.53917 0.57489 0.73573 1.22407 1.24838 1.37958 1.45497 2.06302 2.10098 2.55081 3.39526 3.70398 3.84729 4.07603 4.34910 4.38742 4.45122 4.62438 4.92139 5.01019 5.21783 5.51006 5.58213 5.69998 5.80865 5.87504 5.95884 6.16883 6.34284 6.43657 6.68129 6.79065 7.00873 8.15224 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.038339 B = 0.008540 C = 0.008295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.159632 B = 3277.911486 C = 3374.823563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.050 3.950 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.482 4.482 8 H 0.061 0.939 9 C 0.071 3.929 10 C -0.246 4.246 11 C -0.082 4.082 12 C -0.221 4.221 13 C -0.092 4.092 14 C 0.150 3.850 15 H 0.130 0.870 16 N -0.819 5.819 17 C 0.497 3.503 18 O -0.536 6.536 19 O -0.510 6.510 20 C -0.190 4.190 21 H 0.294 0.706 22 H 0.097 0.903 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.366 0.634 26 H 0.351 0.649 27 H 0.427 0.573 28 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.214 -1.619 0.731 10.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.165 4.165 3 Si 0.786 3.214 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.512 4.512 8 H 0.079 0.921 9 C 0.069 3.931 10 C -0.265 4.265 11 C -0.100 4.100 12 C -0.240 4.240 13 C -0.094 4.094 14 C 0.037 3.963 15 H 0.148 0.852 16 N -0.353 5.353 17 C 0.340 3.660 18 O -0.426 6.426 19 O -0.323 6.323 20 C -0.210 4.210 21 H 0.105 0.895 22 H 0.115 0.885 23 H 0.145 0.855 24 H 0.139 0.861 25 H 0.182 0.818 26 H 0.166 0.834 27 H 0.288 0.712 28 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.330 -2.076 0.984 10.583 hybrid contribution -0.568 1.554 -0.124 1.659 sum 9.762 -0.522 0.860 9.814 Atomic orbital electron populations 1.69717 1.09086 1.31472 1.36959 1.26757 0.95263 1.04016 0.90423 0.85537 0.79508 0.76939 0.79426 1.18365 1.20369 1.18094 1.19486 0.94451 0.95737 1.41512 0.92078 1.17882 0.92727 0.92189 0.90319 1.21225 0.96914 1.04562 1.03824 1.20935 0.92836 0.97765 0.98430 1.20581 0.99313 0.99812 1.04316 1.20034 0.93925 0.97336 0.98109 1.19759 0.90582 0.95915 0.90020 0.85217 1.58781 1.26440 1.32742 1.17301 1.23296 0.84935 0.74581 0.83204 1.90643 1.20685 1.48178 1.83087 1.84526 1.50525 1.75682 1.21572 1.21074 0.92842 1.03500 1.03578 0.89547 0.88513 0.85500 0.86058 0.81804 0.83351 0.71171 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -45.63 13.93 21.83 0.30 -45.32 15 2 C 0.05 2.65 5.40 85.26 0.46 3.11 15 3 Si 0.96 42.24 24.52 68.60 1.68 43.92 15 4 H -0.26 -10.71 6.71 99.48 0.67 -10.04 15 5 H -0.28 -11.44 7.11 99.48 0.71 -10.74 15 6 H -0.26 -11.63 6.86 99.48 0.68 -10.95 15 7 C -0.48 -26.34 9.57 23.46 0.22 -26.11 15 8 H 0.06 3.57 8.06 -2.91 -0.02 3.54 15 9 C 0.07 3.51 5.10 -21.29 -0.11 3.40 15 10 C -0.25 -11.25 7.18 22.73 0.16 -11.09 15 11 C -0.08 -3.19 10.02 22.22 0.22 -2.97 15 12 C -0.22 -8.00 9.29 22.46 0.21 -7.79 15 13 C -0.09 -3.36 4.92 -19.91 -0.10 -3.46 15 14 C 0.15 4.50 3.49 43.43 0.15 4.65 15 15 H 0.13 3.53 7.99 -2.39 -0.02 3.51 15 16 N -0.82 -21.16 8.81 -174.96 -1.54 -22.70 15 17 C 0.50 15.43 7.55 71.24 0.54 15.97 15 18 O -0.54 -18.59 17.01 21.95 0.37 -18.21 15 19 O -0.51 -13.52 13.42 -51.34 -0.69 -14.21 15 20 C -0.19 -8.21 9.41 22.73 0.21 -7.99 15 21 H 0.29 14.24 8.30 -92.71 -0.77 13.47 15 22 H 0.10 4.46 4.73 -2.91 -0.01 4.44 15 23 H 0.13 4.15 8.06 -2.91 -0.02 4.13 15 24 H 0.12 3.79 6.65 -2.91 -0.02 3.77 15 25 H 0.37 8.13 9.06 -89.69 -0.81 7.31 15 26 H 0.35 9.19 6.92 -89.70 -0.62 8.57 15 27 H 0.43 7.06 9.10 -74.06 -0.67 6.39 15 28 H 0.11 4.56 8.03 -2.91 -0.02 4.54 15 Total: -1.00 -62.01 247.22 1.16 -60.85 By element: Atomic # 1 Polarization: 28.89 SS G_CDS: -0.94 Total: 27.95 kcal Atomic # 6 Polarization: -34.25 SS G_CDS: 1.98 Total: -32.27 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -1.24 Total: -68.03 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.32 Total: -32.42 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.68 Total: 43.92 kcal Total: -62.01 1.16 -60.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104498355.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.092 kcal (2) G-P(sol) polarization free energy of solvation -62.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds