Wall clock time and date at job start Mon Mar 30 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38170 * 120.03156 * 2 1 4 4 C 1.38240 * 120.05994 * 180.02562 * 3 2 1 5 5 C 1.38290 * 120.11025 * 0.02562 * 4 3 2 6 6 C 1.38118 * 120.05470 * 359.97438 * 5 4 3 7 7 C 1.38719 * 120.02869 * 180.28492 * 2 1 3 8 8 O 1.35923 * 120.05194 * 359.96970 * 7 2 1 9 9 C 1.34702 * 116.99800 * 82.61579 * 8 7 2 10 10 O 1.21509 * 119.99780 * 5.69132 * 9 8 7 11 11 N 1.34773 * 119.99542 * 185.68292 * 9 8 7 12 12 C 1.37176 * 119.99726 * 179.97438 * 11 9 8 13 13 H 1.08003 * 120.00034 * 0.02562 * 12 11 9 14 14 C 1.38899 * 120.00126 * 180.02562 * 12 11 9 15 15 N 1.31455 * 119.99834 * 180.02562 * 14 12 11 16 16 Si 1.86799 * 119.99671 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47154 * 90.00253 * 16 14 12 18 18 H 1.48506 * 109.46887 * 209.99546 * 16 14 12 19 19 H 1.48498 * 109.47410 * 330.00033 * 16 14 12 20 20 H 1.08993 * 109.47242 * 89.99543 * 1 2 3 21 21 H 1.09000 * 109.47008 * 210.00287 * 1 2 3 22 22 H 1.09005 * 109.46974 * 329.99349 * 1 2 3 23 23 H 1.07999 * 119.96749 * 0.02562 * 3 2 1 24 24 H 1.07998 * 119.94527 * 180.02562 * 4 3 2 25 25 H 1.08002 * 119.97199 * 179.97438 * 5 4 3 26 26 H 1.08007 * 120.02628 * 180.02562 * 6 5 4 27 27 H 0.97006 * 120.00389 * 0.02562 * 11 9 8 28 28 H 0.97005 * 119.99941 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1969 -0.0005 5 6 4.2752 0.0009 -0.0016 6 6 3.5887 -1.1975 -0.0016 7 6 2.2012 -1.2010 -0.0060 8 8 1.5232 -2.3791 -0.0112 9 6 1.0840 -2.8265 -1.2034 10 8 1.3878 -2.2385 -2.2224 11 7 0.3077 -3.9265 -1.2658 12 6 -0.1401 -4.3818 -2.4799 13 1 0.1298 -3.8592 -3.3856 14 6 -0.9406 -5.5152 -2.5443 15 7 -1.3692 -5.9518 -3.7077 16 14 -1.4079 -6.4187 -0.9775 17 1 -2.6743 -5.8580 -0.4418 18 1 -1.5923 -7.8620 -1.2748 19 1 -0.3288 -6.2545 0.0293 20 1 -0.3633 0.0001 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8900 0.5140 23 1 1.6585 2.1315 0.0004 24 1 4.1195 2.1330 -0.0001 25 1 5.3552 0.0041 -0.0024 26 1 4.1314 -2.1313 -0.0020 27 1 0.0650 -4.3957 -0.4523 28 1 -1.9285 -6.7431 -3.7527 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107134295.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:08 Heat of formation + Delta-G solvation = -45.836918 kcal Electronic energy + Delta-G solvation = -14559.648677 eV Core-core repulsion = 11962.193174 eV Total energy + Delta-G solvation = -2597.455504 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.51756 -38.35494 -36.14163 -34.09952 -32.52703 -31.80113 -29.99224 -26.77871 -25.23603 -22.62851 -21.61143 -20.19665 -19.04744 -17.13404 -16.93011 -16.13728 -15.60898 -14.85481 -14.11336 -14.05823 -13.64181 -13.15366 -13.01137 -12.80849 -12.32508 -12.15650 -11.76290 -11.62362 -11.20054 -11.19639 -10.63523 -10.24427 -10.09846 -9.70848 -9.46001 -8.65062 -8.35103 -8.32788 -6.37976 -3.94918 1.34179 1.51211 3.03520 3.06879 3.11768 3.27617 3.77832 4.03789 4.07253 4.96570 4.99511 5.12708 5.18103 5.31737 5.40106 5.62239 5.80650 5.91370 5.95771 6.08008 6.37350 6.49459 6.58911 6.71864 6.84530 7.39798 7.50476 8.01647 8.45378 8.79484 9.26625 9.72829 10.73872 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051652 B = 0.007087 C = 0.007011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.962214 B = 3950.069598 C = 3992.906176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.088 4.088 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.126 3.874 8 O -0.327 6.327 9 C 0.590 3.410 10 O -0.581 6.581 11 N -0.561 5.561 12 C -0.304 4.304 13 H 0.124 0.876 14 C 0.048 3.952 15 N -0.877 5.877 16 Si 0.878 3.122 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.267 1.267 20 H 0.077 0.923 21 H 0.069 0.931 22 H 0.066 0.934 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.125 0.875 26 H 0.128 0.872 27 H 0.380 0.620 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.665 9.588 10.388 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C -0.130 4.130 4 C -0.142 4.142 5 C -0.134 4.134 6 C -0.137 4.137 7 C 0.083 3.917 8 O -0.240 6.240 9 C 0.343 3.657 10 O -0.471 6.471 11 N -0.208 5.208 12 C -0.431 4.431 13 H 0.141 0.859 14 C -0.156 4.156 15 N -0.516 5.516 16 Si 0.704 3.296 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.192 1.192 20 H 0.095 0.905 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.143 0.857 24 H 0.140 0.860 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.214 0.786 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.701 9.706 9.771 14.906 hybrid contribution -0.367 -0.873 0.992 1.372 sum 5.334 8.832 10.764 14.910 Atomic orbital electron populations 1.20741 0.90704 1.02658 1.03147 1.20176 0.96910 0.92390 0.99384 1.20867 0.94181 0.96828 1.01141 1.21095 0.94198 0.97977 1.00979 1.20923 0.99709 0.91790 1.01013 1.21251 0.92919 0.99121 1.00404 1.18081 0.89823 0.83262 1.00523 1.84138 1.68937 1.36488 1.34481 1.17963 0.82987 0.84009 0.80729 1.90878 1.62868 1.60030 1.33347 1.40859 1.46162 1.23853 1.09911 1.19306 1.28857 1.10704 0.84257 0.85888 1.24905 0.96787 0.96541 0.97324 1.69614 1.34425 1.24314 1.23281 0.86678 0.79581 0.80489 0.82846 1.19336 1.19901 1.19218 0.90482 0.91168 0.91489 0.85728 0.85963 0.85694 0.85451 0.78615 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 9.47 36.00 0.34 -1.48 15 2 C -0.09 -1.49 5.88 -104.47 -0.61 -2.11 15 3 C -0.11 -1.56 9.70 -39.61 -0.38 -1.94 15 4 C -0.12 -1.58 10.04 -39.56 -0.40 -1.97 15 5 C -0.12 -1.57 10.04 -39.61 -0.40 -1.97 15 6 C -0.12 -1.96 9.99 -39.44 -0.39 -2.35 15 7 C 0.13 2.40 4.93 -39.21 -0.19 2.21 15 8 O -0.33 -6.95 9.21 -24.76 -0.23 -7.17 15 9 C 0.59 14.62 8.26 54.05 0.45 15.06 15 10 O -0.58 -16.22 15.70 -19.28 -0.30 -16.52 15 11 N -0.56 -14.04 5.10 -15.37 -0.08 -14.12 15 12 C -0.30 -8.61 10.16 -14.92 -0.15 -8.77 15 13 H 0.12 3.93 7.39 -52.48 -0.39 3.54 15 14 C 0.05 1.31 5.50 -17.47 -0.10 1.21 15 15 N -0.88 -25.24 13.96 55.49 0.77 -24.47 15 16 Si 0.88 19.35 27.74 -169.99 -4.71 14.64 15 17 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 15 19 H -0.27 -5.49 6.52 56.52 0.37 -5.13 15 20 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 21 H 0.07 1.15 7.54 -51.93 -0.39 0.76 15 22 H 0.07 0.82 8.09 -51.93 -0.42 0.40 15 23 H 0.12 1.38 8.06 -52.49 -0.42 0.95 15 24 H 0.12 1.15 8.06 -52.49 -0.42 0.73 15 25 H 0.13 1.30 8.06 -52.49 -0.42 0.87 15 26 H 0.13 1.96 8.06 -52.48 -0.42 1.54 15 27 H 0.38 8.51 5.87 -40.82 -0.24 8.27 15 28 H 0.28 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 253.99 15.07 3.83 3.83 Total: -1.00 -31.79 253.99 -5.28 -37.07 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -2.72 Total: 8.86 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.84 Total: -2.11 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: 0.70 Total: -38.58 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.53 Total: -23.70 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.79 -5.28 -37.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107134295.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.767 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds