Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.97326 * 2 1 4 4 C 1.38247 * 120.10961 * 179.76442 * 3 2 1 5 5 C 1.38158 * 120.05957 * 0.50751 * 4 3 2 6 6 C 1.38720 * 119.94095 * 359.74856 * 5 4 3 7 7 O 1.35923 * 120.05238 * 179.97438 * 6 5 4 8 8 C 1.34703 * 116.99784 * 70.02039 * 7 6 5 9 9 O 1.21504 * 120.00051 * 5.94774 * 8 7 6 10 10 N 1.34777 * 119.99475 * 185.94608 * 8 7 6 11 11 C 1.37183 * 119.99530 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00094 * 0.02562 * 11 10 8 13 13 C 1.38888 * 119.99955 * 180.02562 * 11 10 8 14 14 N 1.31469 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00275 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47252 * 59.99988 * 15 13 11 17 17 H 1.48501 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46675 * 300.00114 * 15 13 11 19 19 C 1.38123 * 119.96896 * 180.27292 * 2 1 3 20 20 H 1.09004 * 109.47060 * 269.72374 * 1 2 3 21 21 H 1.08994 * 109.47418 * 29.73025 * 1 2 3 22 22 H 1.09004 * 109.47157 * 149.72962 * 1 2 3 23 23 H 1.08001 * 119.94440 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.96821 * 180.25343 * 4 3 2 25 25 H 1.08001 * 120.03511 * 179.76372 * 5 4 3 26 26 H 0.97001 * 120.00566 * 0.02562 * 10 8 7 27 27 H 0.97007 * 119.99781 * 180.02562 * 14 13 11 28 28 H 1.07995 * 120.03405 * 359.95377 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0049 5 6 4.2752 0.0071 -0.0007 6 6 3.5845 -1.1959 -0.0061 7 8 4.2659 -2.3720 -0.0122 8 6 4.9280 -2.7009 1.1138 9 8 4.8113 -2.0147 2.1097 10 7 5.7200 -3.7913 1.1356 11 6 6.3947 -4.1260 2.2822 12 1 6.2910 -3.5161 3.1674 13 6 7.2112 -5.2493 2.3046 14 7 7.3379 -5.9915 1.2269 15 14 8.1294 -5.7056 3.8660 16 1 7.1553 -5.9484 4.9602 17 1 8.9263 -6.9362 3.6300 18 1 9.0372 -4.5944 4.2490 19 6 2.1970 -1.1965 -0.0057 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8923 -0.5096 22 1 -0.3634 -0.8876 -0.5180 23 1 1.6565 2.1325 0.0004 24 1 4.1176 2.1381 0.0090 25 1 5.3552 0.0102 -0.0008 26 1 5.8134 -4.3389 0.3405 27 1 7.9079 -6.7762 1.2426 28 1 1.6571 -2.1318 -0.0094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107134298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -54.430188 kcal Electronic energy + Delta-G solvation = -14225.127310 eV Core-core repulsion = 11627.299174 eV Total energy + Delta-G solvation = -2597.828136 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.30535 -38.36274 -36.11040 -34.02315 -32.42266 -31.39794 -29.89013 -26.79034 -25.32189 -22.66031 -21.84358 -19.95298 -18.31906 -17.16657 -16.75426 -15.92525 -15.85864 -14.65285 -14.13489 -13.95772 -13.67739 -13.55303 -12.96940 -12.85093 -12.29331 -11.76139 -11.61671 -11.45422 -11.24771 -11.07963 -10.50158 -10.30740 -10.23111 -9.64467 -9.35200 -8.57551 -8.26852 -8.14723 -6.49102 -3.95008 1.43742 1.56730 3.17230 3.19021 3.23398 3.41343 3.91566 4.07517 4.28376 4.94018 5.03891 5.20545 5.23169 5.35266 5.55765 5.62329 5.65632 5.79011 5.86025 6.22581 6.25036 6.58033 6.70062 6.73934 6.96344 7.44147 7.57682 7.97036 8.41733 9.03484 9.34384 9.94789 10.68801 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.060590 B = 0.005854 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.011176 B = 4782.161612 C = 4860.286170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.078 4.078 3 C -0.134 4.134 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.138 3.862 7 O -0.326 6.326 8 C 0.578 3.422 9 O -0.598 6.598 10 N -0.534 5.534 11 C -0.300 4.300 12 H 0.107 0.893 13 C 0.026 3.974 14 N -0.898 5.898 15 Si 0.940 3.060 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.272 1.272 19 C -0.127 4.127 20 H 0.070 0.930 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.121 0.879 24 H 0.124 0.876 25 H 0.125 0.875 26 H 0.402 0.598 27 H 0.275 0.725 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 9.154 -4.042 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.078 4.078 3 C -0.152 4.152 4 C -0.121 4.121 5 C -0.149 4.149 6 C 0.095 3.905 7 O -0.239 6.239 8 C 0.330 3.670 9 O -0.491 6.491 10 N -0.177 5.177 11 C -0.427 4.427 12 H 0.125 0.875 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.766 3.234 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.146 4.146 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.085 0.915 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.143 0.857 26 H 0.236 0.764 27 H 0.085 0.915 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -8.477 9.290 -3.614 13.085 hybrid contribution 0.651 -0.611 0.313 0.946 sum -7.826 8.678 -3.301 12.143 Atomic orbital electron populations 1.20759 0.90998 1.02579 1.02360 1.19679 0.95943 0.92452 0.99776 1.20956 0.94160 0.97291 1.02779 1.20926 0.94126 0.97359 0.99712 1.21386 1.00663 0.91973 1.00857 1.18279 0.89961 0.83854 0.98412 1.84187 1.62423 1.37275 1.40046 1.18177 0.82798 0.85072 0.80916 1.90837 1.69597 1.54949 1.33696 1.40560 1.39601 1.22017 1.15540 1.19632 1.22569 1.09983 0.90552 0.87525 1.25297 0.97706 0.95670 0.99009 1.69658 1.39138 1.16875 1.28105 0.85783 0.79176 0.77894 0.80553 1.19715 1.20774 1.19719 1.20991 0.92538 0.98493 1.02555 0.91147 0.91599 0.91528 0.86101 0.85770 0.85661 0.76362 0.91533 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.14 10.01 36.01 0.36 -0.78 15 2 C -0.08 -1.11 5.88 -104.65 -0.62 -1.72 15 3 C -0.13 -1.79 9.70 -39.56 -0.38 -2.17 15 4 C -0.10 -1.51 10.04 -39.61 -0.40 -1.91 15 5 C -0.13 -2.36 9.40 -39.43 -0.37 -2.73 15 6 C 0.14 2.77 5.25 -39.21 -0.21 2.56 15 7 O -0.33 -7.42 10.09 -24.77 -0.25 -7.67 15 8 C 0.58 15.06 8.49 54.06 0.46 15.52 15 9 O -0.60 -17.04 15.41 -19.27 -0.30 -17.33 15 10 N -0.53 -14.32 5.29 -15.37 -0.08 -14.41 15 11 C -0.30 -8.43 9.68 -14.92 -0.14 -8.57 15 12 H 0.11 3.08 7.16 -52.49 -0.38 2.71 15 13 C 0.03 0.68 5.50 -17.47 -0.10 0.59 15 14 N -0.90 -24.51 13.05 55.49 0.72 -23.78 15 15 Si 0.94 20.84 29.55 -169.99 -5.02 15.82 15 16 H -0.27 -5.97 7.11 56.52 0.40 -5.57 15 17 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 19 C -0.13 -2.18 9.64 -39.43 -0.38 -2.56 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.26 15 21 H 0.07 0.55 8.08 -51.93 -0.42 0.13 15 22 H 0.07 0.63 8.08 -51.93 -0.42 0.21 15 23 H 0.12 1.23 8.06 -52.49 -0.42 0.81 15 24 H 0.12 1.44 8.06 -52.49 -0.42 1.02 15 25 H 0.13 2.28 8.06 -52.49 -0.42 1.85 15 26 H 0.40 10.46 8.01 -40.82 -0.33 10.13 15 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 15 28 H 0.13 2.02 8.06 -52.49 -0.42 1.60 15 LS Contribution 258.31 15.07 3.89 3.89 Total: -1.00 -31.02 258.31 -5.60 -36.62 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -2.79 Total: 8.62 kcal Atomic # 6 Polarization: 0.01 SS G_CDS: -1.77 Total: -1.77 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.64 Total: -38.19 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.55 Total: -25.00 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.02 -5.60 -36.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107134298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.807 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds