Wall clock time and date at job start Mon Mar 30 2020 03:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38285 * 119.97326 * 2 1 4 4 C 1.38247 * 120.10961 * 179.76442 * 3 2 1 5 5 C 1.38158 * 120.05957 * 0.50751 * 4 3 2 6 6 C 1.38720 * 119.94095 * 359.74856 * 5 4 3 7 7 O 1.35923 * 120.05238 * 179.97438 * 6 5 4 8 8 C 1.34703 * 116.99784 * 70.02039 * 7 6 5 9 9 O 1.21504 * 120.00051 * 5.94774 * 8 7 6 10 10 N 1.34777 * 119.99475 * 185.94608 * 8 7 6 11 11 C 1.37183 * 119.99530 * 179.97438 * 10 8 7 12 12 H 1.07994 * 120.00094 * 0.02562 * 11 10 8 13 13 C 1.38888 * 119.99955 * 180.02562 * 11 10 8 14 14 N 1.31469 * 119.99715 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00275 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47252 * 59.99988 * 15 13 11 17 17 H 1.48501 * 109.47177 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46675 * 300.00114 * 15 13 11 19 19 C 1.38123 * 119.96896 * 180.27292 * 2 1 3 20 20 H 1.09004 * 109.47060 * 269.72374 * 1 2 3 21 21 H 1.08994 * 109.47418 * 29.73025 * 1 2 3 22 22 H 1.09004 * 109.47157 * 149.72962 * 1 2 3 23 23 H 1.08001 * 119.94440 * 0.02562 * 3 2 1 24 24 H 1.07999 * 119.96821 * 180.25343 * 4 3 2 25 25 H 1.08001 * 120.03511 * 179.76372 * 5 4 3 26 26 H 0.97001 * 120.00566 * 0.02562 * 10 8 7 27 27 H 0.97007 * 119.99781 * 180.02562 * 14 13 11 28 28 H 1.07995 * 120.03405 * 359.95377 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 0.0049 5 6 4.2752 0.0071 -0.0007 6 6 3.5845 -1.1959 -0.0061 7 8 4.2659 -2.3720 -0.0122 8 6 4.9280 -2.7009 1.1138 9 8 4.8113 -2.0147 2.1097 10 7 5.7200 -3.7913 1.1356 11 6 6.3947 -4.1260 2.2822 12 1 6.2910 -3.5161 3.1674 13 6 7.2112 -5.2493 2.3046 14 7 7.3379 -5.9915 1.2269 15 14 8.1294 -5.7056 3.8660 16 1 7.1553 -5.9484 4.9602 17 1 8.9263 -6.9362 3.6300 18 1 9.0372 -4.5944 4.2490 19 6 2.1970 -1.1965 -0.0057 20 1 -0.3633 -0.0050 1.0277 21 1 -0.3634 0.8923 -0.5096 22 1 -0.3634 -0.8876 -0.5180 23 1 1.6565 2.1325 0.0004 24 1 4.1176 2.1381 0.0090 25 1 5.3552 0.0102 -0.0008 26 1 5.8134 -4.3389 0.3405 27 1 7.9079 -6.7762 1.2426 28 1 1.6571 -2.1318 -0.0094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107134298.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:10 Heat of formation + Delta-G solvation = -74.581273 kcal Electronic energy + Delta-G solvation = -14226.001126 eV Core-core repulsion = 11627.299174 eV Total energy + Delta-G solvation = -2598.701952 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.01209 -39.85676 -37.92102 -36.12654 -33.65840 -33.36435 -31.24618 -27.83048 -27.36220 -24.26014 -23.15254 -21.58259 -20.35834 -19.13782 -18.36932 -17.50559 -17.22967 -16.57449 -15.71357 -15.63583 -15.23521 -14.83435 -14.38181 -14.11567 -13.59628 -13.43247 -12.98623 -12.83943 -12.69975 -12.55880 -12.37023 -12.11836 -11.76767 -11.61883 -11.41586 -10.24973 -9.82732 -9.56886 -8.55468 -6.11208 0.08292 0.33585 1.39582 1.39921 1.51692 1.75334 1.92727 2.36261 2.79813 3.10288 3.77045 3.88918 3.93940 4.13683 4.36169 4.43563 4.52680 4.83033 4.87265 4.92232 5.23423 5.29555 5.36349 5.43191 5.50626 5.61370 5.87688 6.05765 6.36839 6.93362 7.24887 7.90053 8.62773 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.060590 B = 0.005854 C = 0.005760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.011176 B = 4782.161612 C = 4860.286170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.100 4.100 5 C -0.154 4.154 6 C 0.083 3.917 7 O -0.325 6.325 8 C 0.580 3.420 9 O -0.628 6.628 10 N -0.540 5.540 11 C -0.336 4.336 12 H 0.091 0.909 13 C -0.009 4.009 14 N -0.919 5.919 15 Si 1.009 2.991 16 H -0.267 1.267 17 H -0.267 1.267 18 H -0.267 1.267 19 C -0.142 4.142 20 H 0.079 0.921 21 H 0.094 0.906 22 H 0.072 0.928 23 H 0.167 0.833 24 H 0.158 0.842 25 H 0.110 0.890 26 H 0.402 0.598 27 H 0.283 0.717 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.621 10.497 -3.749 14.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.075 4.075 3 C -0.137 4.137 4 C -0.117 4.117 5 C -0.173 4.173 6 C 0.041 3.959 7 O -0.238 6.238 8 C 0.333 3.667 9 O -0.523 6.523 10 N -0.184 5.184 11 C -0.464 4.464 12 H 0.109 0.891 13 C -0.209 4.209 14 N -0.558 5.558 15 Si 0.830 3.170 16 H -0.192 1.192 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.160 4.160 20 H 0.098 0.902 21 H 0.113 0.887 22 H 0.091 0.909 23 H 0.185 0.815 24 H 0.176 0.824 25 H 0.128 0.872 26 H 0.237 0.763 27 H 0.092 0.908 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.605 10.637 -3.363 14.721 hybrid contribution 0.880 -0.912 0.136 1.275 sum -8.725 9.724 -3.227 13.458 Atomic orbital electron populations 1.20859 0.87801 1.04396 1.03442 1.20208 0.98184 0.91505 0.97605 1.21528 0.93705 0.98806 0.99691 1.21348 0.95141 0.97136 0.98105 1.21486 1.00312 0.93001 1.02486 1.18850 0.91307 0.83335 1.02415 1.84198 1.62346 1.39040 1.38223 1.18289 0.82475 0.84441 0.81463 1.90777 1.70609 1.55775 1.35159 1.40590 1.40056 1.22369 1.15392 1.19718 1.24689 1.11238 0.90705 0.89122 1.26248 0.97576 0.94678 1.02442 1.69735 1.39207 1.17060 1.29820 0.84772 0.77870 0.78041 0.76292 1.19191 1.19151 1.19178 1.21221 0.91461 1.00250 1.03099 0.90211 0.88713 0.90935 0.81549 0.82424 0.87171 0.76334 0.90779 0.85263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 10.01 71.24 0.71 -1.12 15 2 C -0.07 -1.93 5.88 -19.88 -0.12 -2.05 15 3 C -0.12 -2.76 9.70 22.28 0.22 -2.54 15 4 C -0.10 -2.71 10.04 22.25 0.22 -2.49 15 5 C -0.15 -5.72 9.40 22.37 0.21 -5.51 15 6 C 0.08 3.44 5.25 22.51 0.12 3.56 15 7 O -0.33 -15.63 10.09 0.16 0.00 -15.63 15 8 C 0.58 31.77 8.49 129.79 1.10 32.87 15 9 O -0.63 -37.40 15.41 19.82 0.31 -37.10 15 10 N -0.54 -30.32 5.29 -432.92 -2.29 -32.61 15 11 C -0.34 -19.52 9.68 84.01 0.81 -18.71 15 12 H 0.09 5.46 7.16 -2.91 -0.02 5.44 15 13 C -0.01 -0.49 5.50 84.90 0.47 -0.02 15 14 N -0.92 -50.38 13.05 21.66 0.28 -50.10 15 15 Si 1.01 42.42 29.55 68.60 2.03 44.44 15 16 H -0.27 -10.99 7.11 99.48 0.71 -10.29 15 17 H -0.27 -10.51 7.11 99.48 0.71 -9.80 15 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 15 19 C -0.14 -4.85 9.64 22.37 0.22 -4.64 15 20 H 0.08 1.26 8.14 -2.38 -0.02 1.24 15 21 H 0.09 1.09 8.08 -2.39 -0.02 1.07 15 22 H 0.07 1.16 8.08 -2.38 -0.02 1.14 15 23 H 0.17 2.37 8.06 -2.91 -0.02 2.35 15 24 H 0.16 3.15 8.06 -2.91 -0.02 3.13 15 25 H 0.11 4.26 8.06 -2.91 -0.02 4.24 15 26 H 0.40 21.93 8.01 -92.71 -0.74 21.18 15 27 H 0.28 14.35 8.31 -92.70 -0.77 13.58 15 28 H 0.13 4.19 8.06 -2.91 -0.02 4.16 15 Total: -1.00 -69.18 258.31 4.72 -64.46 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.44 Total: 27.17 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: 3.96 Total: -0.63 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -2.01 Total: -82.71 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: 0.31 Total: -52.73 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -69.18 4.72 -64.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107134298.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.118 kcal (2) G-P(sol) polarization free energy of solvation -69.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds