Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48496 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47548 * 300.00457 * 3 2 1 6 6 H 1.48507 * 109.46947 * 60.00418 * 3 2 1 7 7 C 1.37879 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99424 * 184.89812 * 7 2 1 9 9 C 1.50697 * 120.00080 * 4.90105 * 7 2 1 10 10 C 1.50701 * 109.62808 * 84.63747 * 9 7 2 11 11 C 1.38678 * 120.41835 * 270.30750 * 10 9 7 12 12 C 1.38630 * 118.41892 * 180.02562 * 11 10 9 13 13 C 1.38220 * 119.16378 * 359.97438 * 12 11 10 14 14 N 1.31850 * 120.76418 * 359.97438 * 13 12 11 15 15 C 1.31891 * 121.72715 * 0.04319 * 14 13 12 16 16 O 1.43753 * 109.50880 * 204.94966 * 9 7 2 17 17 C 1.44789 * 104.80969 * 95.49343 * 16 9 7 18 18 C 1.54907 * 101.72354 * 36.10530 * 17 16 9 19 19 O 1.43365 * 109.63162 * 324.24344 * 9 7 2 20 20 H 0.97006 * 119.99497 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.78721 * 359.97438 * 11 10 9 22 22 H 1.08001 * 120.41553 * 179.72431 * 12 11 10 23 23 H 1.07999 * 119.61846 * 180.02562 * 13 12 11 24 24 H 1.08002 * 119.61919 * 179.97438 * 15 14 13 25 25 H 1.08998 * 110.97787 * 277.99187 * 17 16 9 26 26 H 1.09007 * 111.00353 * 154.22417 * 17 16 9 27 27 H 1.08999 * 110.69876 * 206.04090 * 18 17 16 28 28 H 1.09010 * 110.84737 * 82.90014 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 0.0793 9 6 1.2551 -2.4967 -0.1126 10 6 0.9933 -2.8068 -1.5639 11 6 -0.1632 -2.3543 -2.1811 12 6 -0.3623 -2.6640 -3.5176 13 6 0.5918 -3.4078 -4.1860 14 7 1.6804 -3.8207 -3.5673 15 6 1.9028 -3.5451 -2.2968 16 8 2.0361 -3.5518 0.4734 17 6 1.5391 -3.6716 1.8280 18 6 0.0276 -3.3933 1.6345 19 8 0.0100 -2.3982 0.5911 20 1 -0.4850 0.8401 0.0004 21 1 -0.8918 -1.7750 -1.6332 22 1 -1.2537 -2.3317 -4.0289 23 1 0.4443 -3.6529 -5.2274 24 1 2.8062 -3.9009 -1.8236 25 1 1.9936 -2.9238 2.4779 26 1 1.7043 -4.6762 2.2174 27 1 -0.4119 -2.9987 2.5506 28 1 -0.4951 -4.2951 1.3155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107264198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = -40.870266 kcal Electronic energy + Delta-G solvation = -15403.705553 eV Core-core repulsion = 12806.465419 eV Total energy + Delta-G solvation = -2597.240133 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.62054 -38.44025 -33.70199 -32.98850 -31.52193 -30.80354 -28.38332 -26.14652 -23.27318 -22.82061 -21.78939 -20.50436 -17.23078 -16.52059 -15.84843 -15.36491 -15.00015 -14.71377 -14.11113 -13.75930 -13.19902 -12.86027 -12.56549 -12.43953 -12.01935 -11.42459 -11.20142 -11.09940 -10.99466 -10.58277 -10.32704 -10.25289 -9.07128 -8.97761 -8.80160 -8.64996 -8.25035 -7.90843 -6.14639 -4.32799 2.00596 2.25731 3.20167 3.28499 3.33315 4.25631 4.62476 4.70835 5.10967 5.17202 5.31197 5.56035 5.67174 5.76032 5.94966 6.00760 6.16603 6.22649 6.31603 6.45464 6.59490 6.74341 7.02890 7.19589 7.41906 7.61738 7.71345 7.88835 8.28567 8.78042 8.90403 9.37694 10.84710 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.014773 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.986595 B = 1894.879972 C = 2514.258038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.083 3.917 3 Si 0.894 3.106 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.552 4.552 8 H 0.075 0.925 9 C 0.408 3.592 10 C -0.093 4.093 11 C -0.046 4.046 12 C -0.188 4.188 13 C 0.064 3.936 14 N -0.499 5.499 15 C 0.098 3.902 16 O -0.393 6.393 17 C 0.030 3.970 18 C 0.013 3.987 19 O -0.325 6.325 20 H 0.261 0.739 21 H 0.149 0.851 22 H 0.121 0.879 23 H 0.140 0.860 24 H 0.150 0.850 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -4.261 -0.011 4.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.125 4.125 3 Si 0.721 3.279 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.589 4.589 8 H 0.093 0.907 9 C 0.332 3.668 10 C -0.095 4.095 11 C -0.072 4.072 12 C -0.208 4.208 13 C -0.093 4.093 14 N -0.208 5.208 15 C -0.058 4.058 16 O -0.314 6.314 17 C -0.047 4.047 18 C -0.064 4.064 19 O -0.244 6.244 20 H 0.071 0.929 21 H 0.167 0.833 22 H 0.139 0.861 23 H 0.158 0.842 24 H 0.167 0.833 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.015 -4.599 -0.639 4.752 hybrid contribution -0.227 1.518 0.577 1.640 sum -1.241 -3.080 -0.062 3.322 Atomic orbital electron populations 1.70091 1.05691 1.26399 1.45065 1.24998 0.94903 0.99176 0.93420 0.86500 0.80453 0.83124 0.77813 1.19428 1.20668 1.20659 1.21410 0.93875 0.89066 1.54593 0.90725 1.19637 0.77759 0.85535 0.83830 1.21423 0.94143 0.94881 0.99099 1.21608 0.97039 0.95061 0.93469 1.22029 1.00868 1.01945 0.95971 1.22416 0.90690 0.96823 0.99400 1.67590 1.20927 1.21699 1.10557 1.22406 0.98973 0.95232 0.89197 1.89026 1.60838 1.57613 1.23918 1.24004 0.93428 1.00953 0.86298 1.23925 0.96068 0.93026 0.93427 1.89301 1.37211 1.53086 1.44814 0.92851 0.83327 0.86087 0.84226 0.83315 0.91378 0.89866 0.90378 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.67 10.82 55.43 0.60 -22.07 15 2 C 0.08 2.22 5.40 -17.82 -0.10 2.13 15 3 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 15 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 7 C -0.55 -15.01 8.49 -34.44 -0.29 -15.30 15 8 H 0.07 2.06 7.82 -52.49 -0.41 1.65 15 9 C 0.41 10.26 0.98 -29.04 -0.03 10.23 15 10 C -0.09 -2.24 4.94 -104.48 -0.52 -2.75 15 11 C -0.05 -1.05 9.37 -39.27 -0.37 -1.41 15 12 C -0.19 -3.63 10.11 -39.44 -0.40 -4.03 15 13 C 0.06 1.21 11.18 -17.55 -0.20 1.01 15 14 N -0.50 -10.66 10.36 -13.25 -0.14 -10.79 15 15 C 0.10 2.24 10.52 -17.55 -0.18 2.05 15 16 O -0.39 -9.12 10.00 -59.04 -0.59 -9.71 15 17 C 0.03 0.58 7.90 38.16 0.30 0.88 15 18 C 0.01 0.27 8.07 38.16 0.31 0.58 15 19 O -0.32 -8.12 7.83 -59.04 -0.46 -8.58 15 20 H 0.26 6.71 8.31 -40.82 -0.34 6.37 15 21 H 0.15 3.61 6.85 -52.48 -0.36 3.25 15 22 H 0.12 1.93 8.06 -52.49 -0.42 1.50 15 23 H 0.14 2.11 8.06 -52.49 -0.42 1.68 15 24 H 0.15 3.26 7.50 -52.49 -0.39 2.87 15 25 H 0.07 1.31 8.14 -51.93 -0.42 0.88 15 26 H 0.08 1.27 8.14 -51.93 -0.42 0.85 15 27 H 0.08 1.39 8.14 -51.93 -0.42 0.96 15 28 H 0.05 0.87 8.14 -51.92 -0.42 0.45 15 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -29.63 246.02 -6.21 -35.84 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.83 Total: 2.55 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -1.47 Total: -6.63 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.46 Total: -32.87 kcal Atomic # 8 Polarization: -17.24 SS G_CDS: -1.05 Total: -18.29 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -29.63 -6.21 -35.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107264198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.028 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds