Wall clock time and date at job start Mon Mar 30 2020 03:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00130 * 2 1 4 4 H 1.48496 * 109.46928 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47548 * 300.00457 * 3 2 1 6 6 H 1.48507 * 109.46947 * 60.00418 * 3 2 1 7 7 C 1.37879 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99424 * 184.89812 * 7 2 1 9 9 C 1.50697 * 120.00080 * 4.90105 * 7 2 1 10 10 C 1.50701 * 109.62808 * 84.63747 * 9 7 2 11 11 C 1.38678 * 120.41835 * 270.30750 * 10 9 7 12 12 C 1.38630 * 118.41892 * 180.02562 * 11 10 9 13 13 C 1.38220 * 119.16378 * 359.97438 * 12 11 10 14 14 N 1.31850 * 120.76418 * 359.97438 * 13 12 11 15 15 C 1.31891 * 121.72715 * 0.04319 * 14 13 12 16 16 O 1.43753 * 109.50880 * 204.94966 * 9 7 2 17 17 C 1.44789 * 104.80969 * 95.49343 * 16 9 7 18 18 C 1.54907 * 101.72354 * 36.10530 * 17 16 9 19 19 O 1.43365 * 109.63162 * 324.24344 * 9 7 2 20 20 H 0.97006 * 119.99497 * 359.97438 * 1 2 3 21 21 H 1.08003 * 120.78721 * 359.97438 * 11 10 9 22 22 H 1.08001 * 120.41553 * 179.72431 * 12 11 10 23 23 H 1.07999 * 119.61846 * 180.02562 * 13 12 11 24 24 H 1.08002 * 119.61919 * 179.97438 * 15 14 13 25 25 H 1.08998 * 110.97787 * 277.99187 * 17 16 9 26 26 H 1.09007 * 111.00353 * 154.22417 * 17 16 9 27 27 H 1.08999 * 110.69876 * 206.04090 * 18 17 16 28 28 H 1.09010 * 110.84737 * 82.90014 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0816 -1.1958 0.0793 9 6 1.2551 -2.4967 -0.1126 10 6 0.9933 -2.8068 -1.5639 11 6 -0.1632 -2.3543 -2.1811 12 6 -0.3623 -2.6640 -3.5176 13 6 0.5918 -3.4078 -4.1860 14 7 1.6804 -3.8207 -3.5673 15 6 1.9028 -3.5451 -2.2968 16 8 2.0361 -3.5518 0.4734 17 6 1.5391 -3.6716 1.8280 18 6 0.0276 -3.3933 1.6345 19 8 0.0100 -2.3982 0.5911 20 1 -0.4850 0.8401 0.0004 21 1 -0.8918 -1.7750 -1.6332 22 1 -1.2537 -2.3317 -4.0289 23 1 0.4443 -3.6529 -5.2274 24 1 2.8062 -3.9009 -1.8236 25 1 1.9936 -2.9238 2.4779 26 1 1.7043 -4.6762 2.2174 27 1 -0.4119 -2.9987 2.5506 28 1 -0.4951 -4.2951 1.3155 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107264198.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:37 Heat of formation + Delta-G solvation = -60.231154 kcal Electronic energy + Delta-G solvation = -15404.545104 eV Core-core repulsion = 12806.465419 eV Total energy + Delta-G solvation = -2598.079685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.31626 -40.10812 -35.48983 -34.86833 -33.27323 -32.45178 -30.02614 -28.05525 -25.02688 -24.47100 -23.39456 -22.26410 -19.13004 -18.19545 -17.55137 -16.97197 -16.87385 -16.43224 -15.75356 -15.48629 -14.88095 -14.51265 -14.19188 -14.15844 -13.73461 -13.20972 -13.00121 -12.89925 -12.70312 -12.30905 -12.22139 -12.00356 -10.82117 -10.75285 -10.48750 -10.44041 -9.96780 -9.65692 -8.12538 -6.38211 0.37879 0.56963 1.36369 1.39294 1.49791 2.34892 2.98782 3.00090 3.17329 3.48676 3.73046 4.04996 4.20103 4.25322 4.42407 4.43591 4.50357 4.63734 4.77547 4.88663 4.97064 5.11287 5.34925 5.49445 5.65605 5.73456 5.92394 6.00850 6.36943 6.99051 7.15251 7.36974 8.85313 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.014773 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.986595 B = 1894.879972 C = 2514.258038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.045 3.955 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.577 4.577 8 H 0.057 0.943 9 C 0.406 3.594 10 C -0.118 4.118 11 C -0.063 4.063 12 C -0.177 4.177 13 C 0.072 3.928 14 N -0.507 5.507 15 C 0.088 3.912 16 O -0.408 6.408 17 C 0.027 3.973 18 C 0.005 3.995 19 O -0.354 6.354 20 H 0.263 0.737 21 H 0.128 0.872 22 H 0.160 0.840 23 H 0.188 0.812 24 H 0.146 0.854 25 H 0.061 0.939 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.897 -4.564 -0.972 5.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.161 4.161 3 Si 0.775 3.225 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.614 4.614 8 H 0.075 0.925 9 C 0.330 3.670 10 C -0.121 4.121 11 C -0.090 4.090 12 C -0.196 4.196 13 C -0.085 4.085 14 N -0.216 5.216 15 C -0.068 4.068 16 O -0.330 6.330 17 C -0.049 4.049 18 C -0.072 4.072 19 O -0.274 6.274 20 H 0.072 0.928 21 H 0.146 0.854 22 H 0.178 0.822 23 H 0.205 0.795 24 H 0.163 0.837 25 H 0.080 0.920 26 H 0.144 0.856 27 H 0.114 0.886 28 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.453 -4.913 -1.581 5.362 hybrid contribution -0.139 1.532 0.858 1.761 sum -1.593 -3.382 -0.723 3.807 Atomic orbital electron populations 1.70195 1.06490 1.26946 1.45382 1.25607 0.95704 1.01654 0.93128 0.85649 0.79065 0.79763 0.78034 1.19740 1.20322 1.19789 1.21584 0.93307 0.90955 1.55566 0.92511 1.19493 0.77799 0.85044 0.84686 1.21456 0.95350 0.96478 0.98838 1.21593 0.96541 0.95688 0.95159 1.22406 1.02158 1.00630 0.94431 1.23193 0.89214 0.94962 1.01149 1.67648 1.22148 1.21998 1.09823 1.22356 0.98833 0.95722 0.89909 1.88991 1.61139 1.57077 1.25792 1.24251 0.92749 1.03248 0.84651 1.24207 0.96903 0.92982 0.93093 1.89233 1.37136 1.54887 1.46124 0.92784 0.85377 0.82212 0.79497 0.83685 0.92028 0.85622 0.88650 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.81 10.82 21.45 0.23 -46.58 15 2 C 0.05 2.45 5.40 84.65 0.46 2.90 15 3 Si 0.95 42.83 29.54 68.60 2.03 44.85 15 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 15 5 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 15 7 C -0.58 -32.10 8.49 25.60 0.22 -31.89 15 8 H 0.06 3.24 7.82 -2.91 -0.02 3.22 15 9 C 0.41 20.76 0.98 29.10 0.03 20.79 15 10 C -0.12 -5.77 4.94 -19.77 -0.10 -5.87 15 11 C -0.06 -2.88 9.37 22.47 0.21 -2.67 15 12 C -0.18 -6.36 10.11 22.36 0.23 -6.13 15 13 C 0.07 2.49 11.18 84.69 0.95 3.43 15 14 N -0.51 -20.78 10.36 -195.85 -2.03 -22.81 15 15 C 0.09 3.98 10.52 84.67 0.89 4.87 15 16 O -0.41 -19.17 10.00 -126.22 -1.26 -20.43 15 17 C 0.03 1.02 7.90 72.63 0.57 1.59 15 18 C 0.01 0.21 8.07 72.63 0.59 0.79 15 19 O -0.35 -17.90 7.83 -126.22 -0.99 -18.89 15 20 H 0.26 13.58 8.31 -92.70 -0.77 12.81 15 21 H 0.13 6.32 6.85 -2.91 -0.02 6.30 15 22 H 0.16 4.43 8.06 -2.91 -0.02 4.41 15 23 H 0.19 4.64 8.06 -2.91 -0.02 4.62 15 24 H 0.15 6.50 7.50 -2.91 -0.02 6.48 15 25 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 26 H 0.13 3.56 8.14 -2.38 -0.02 3.55 15 27 H 0.10 3.30 8.14 -2.39 -0.02 3.28 15 28 H 0.07 2.31 8.14 -2.38 -0.02 2.29 15 Total: -1.00 -64.20 246.02 3.18 -61.02 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 1.16 Total: 15.02 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 4.04 Total: -12.18 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: -1.80 Total: -69.39 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -2.25 Total: -39.33 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -64.20 3.18 -61.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107264198.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.792 kcal (2) G-P(sol) polarization free energy of solvation -64.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds