Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00314 * 2 1 4 4 H 1.48502 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47056 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46786 * 60.00145 * 3 2 1 7 7 C 1.37888 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99882 * 184.85626 * 7 2 1 9 9 C 1.50695 * 119.99927 * 4.85935 * 7 2 1 10 10 C 1.50707 * 109.62856 * 84.59102 * 9 7 2 11 11 C 1.38228 * 119.61650 * 180.02562 * 10 9 7 12 12 C 1.38627 * 119.15892 * 179.74902 * 11 10 9 13 13 C 1.38680 * 118.41910 * 0.46501 * 12 11 10 14 14 C 1.38176 * 119.16052 * 359.51370 * 13 12 11 15 15 N 1.31850 * 119.61680 * 359.97438 * 10 9 7 16 16 O 1.43747 * 109.63054 * 204.98495 * 9 7 2 17 17 C 1.44582 * 104.92249 * 95.31936 * 16 9 7 18 18 C 1.54913 * 101.63506 * 36.26819 * 17 16 9 19 19 O 1.43369 * 109.63116 * 324.19715 * 9 7 2 20 20 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.42005 * 359.94970 * 11 10 9 22 22 H 1.08000 * 120.78726 * 180.22653 * 12 11 10 23 23 H 1.07997 * 120.41275 * 179.78354 * 13 12 11 24 24 H 1.08002 * 119.61724 * 180.25435 * 14 13 12 25 25 H 1.09005 * 111.08778 * 278.16081 * 17 16 9 26 26 H 1.09002 * 110.97904 * 154.33093 * 17 16 9 27 27 H 1.09001 * 110.69643 * 205.95906 * 18 17 16 28 28 H 1.08997 * 110.84307 * 82.82660 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0816 -1.1959 0.0786 9 6 1.2551 -2.4968 -0.1117 10 6 0.9913 -2.8069 -1.5627 11 6 0.3117 -3.9618 -1.9018 12 6 0.0697 -4.2351 -3.2392 13 6 0.5308 -3.3373 -4.1903 14 6 1.2024 -2.2032 -3.7757 15 7 1.4105 -1.9729 -2.4939 16 8 2.0338 -3.5535 0.4742 17 6 1.5417 -3.6717 1.8286 18 6 0.0298 -3.3935 1.6370 19 8 0.0108 -2.3983 0.5938 20 1 -0.4849 0.8400 0.0004 21 1 -0.0292 -4.6411 -1.1344 22 1 -0.4620 -5.1279 -3.5335 23 1 0.3631 -3.5202 -5.2413 24 1 1.5611 -1.4970 -4.5099 25 1 1.9968 -2.9239 2.4779 26 1 1.7074 -4.6763 2.2177 27 1 -0.4085 -2.9990 2.5537 28 1 -0.4932 -4.2953 1.3188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107264204.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = -30.366508 kcal Electronic energy + Delta-G solvation = -15419.586464 eV Core-core repulsion = 12822.801807 eV Total energy + Delta-G solvation = -2596.784656 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.65167 -38.42000 -33.57123 -32.71834 -31.52462 -30.87996 -28.51242 -26.00771 -23.38343 -22.51586 -22.09649 -20.51844 -17.12680 -16.50746 -15.57578 -15.28738 -15.14130 -14.67930 -14.22998 -13.80619 -13.11285 -12.83304 -12.55406 -12.42390 -12.17569 -11.27919 -11.17614 -11.04109 -10.83473 -10.50121 -10.11919 -9.98097 -9.09623 -9.01854 -8.60108 -8.42559 -8.24735 -7.89852 -5.84630 -4.00583 1.88519 2.08972 3.38171 3.45466 3.50951 4.43197 4.53399 4.87018 5.14812 5.34213 5.41435 5.48389 5.59881 5.67679 5.78943 5.93766 6.03010 6.08583 6.33371 6.38643 6.49956 6.69249 6.76211 6.98336 7.10339 7.53104 7.99040 8.08597 8.43178 9.06301 9.16956 9.69667 11.17362 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.015517 C = 0.010738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.711121 B = 1804.039294 C = 2606.922188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.093 3.907 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.533 4.533 8 H 0.069 0.931 9 C 0.410 3.590 10 C 0.168 3.832 11 C -0.161 4.161 12 C -0.093 4.093 13 C -0.193 4.193 14 C 0.083 3.917 15 N -0.419 5.419 16 O -0.391 6.391 17 C 0.029 3.971 18 C 0.010 3.990 19 O -0.318 6.318 20 H 0.256 0.744 21 H 0.121 0.879 22 H 0.122 0.878 23 H 0.122 0.878 24 H 0.145 0.855 25 H 0.070 0.930 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.645 -7.154 -2.017 7.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.114 4.114 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.334 3.666 10 C 0.028 3.972 11 C -0.181 4.181 12 C -0.120 4.120 13 C -0.213 4.213 14 C -0.075 4.075 15 N -0.128 5.128 16 O -0.312 6.312 17 C -0.048 4.048 18 C -0.068 4.068 19 O -0.237 6.237 20 H 0.066 0.934 21 H 0.139 0.861 22 H 0.140 0.860 23 H 0.140 0.860 24 H 0.162 0.838 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.372 -6.248 -1.907 6.543 hybrid contribution -0.198 0.058 -0.284 0.351 sum -0.570 -6.190 -2.192 6.591 Atomic orbital electron populations 1.70128 1.05739 1.25729 1.46782 1.24844 0.94577 0.98715 0.93258 0.86555 0.80404 0.83752 0.77285 1.19652 1.20900 1.21308 1.21038 0.93251 0.88786 1.54011 0.91292 1.19659 0.78040 0.86128 0.82728 1.21807 0.90488 0.87886 0.96988 1.22022 1.00576 0.99193 0.96312 1.21387 0.98492 0.98896 0.93184 1.21983 1.02326 0.97213 0.99760 1.22832 0.95937 0.95289 0.93425 1.67579 1.16356 1.29126 0.99742 1.89018 1.60888 1.57574 1.23723 1.23997 0.93495 1.00967 0.86316 1.23980 0.96060 0.93061 0.93684 1.89408 1.37303 1.52650 1.44329 0.93436 0.86094 0.86039 0.86040 0.83806 0.91219 0.89857 0.90236 0.93459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.21 11.67 55.43 0.65 -24.57 15 2 C 0.09 2.66 5.39 -17.82 -0.10 2.57 15 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 15 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 15 5 H -0.28 -7.02 7.11 56.52 0.40 -6.62 15 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 15 7 C -0.53 -15.42 7.64 -34.44 -0.26 -15.69 15 8 H 0.07 2.04 7.82 -52.49 -0.41 1.63 15 9 C 0.41 10.90 0.92 -29.03 -0.03 10.87 15 10 C 0.17 4.24 6.07 -82.58 -0.50 3.74 15 11 C -0.16 -3.42 9.52 -39.44 -0.38 -3.79 15 12 C -0.09 -1.65 10.18 -39.27 -0.40 -2.05 15 13 C -0.19 -3.31 10.11 -39.44 -0.40 -3.71 15 14 C 0.08 1.68 11.18 -17.55 -0.20 1.48 15 15 N -0.42 -10.54 9.11 -9.47 -0.09 -10.63 15 16 O -0.39 -9.51 10.83 -59.05 -0.64 -10.15 15 17 C 0.03 0.58 7.90 38.17 0.30 0.88 15 18 C 0.01 0.21 8.07 38.17 0.31 0.51 15 19 O -0.32 -8.41 8.60 -59.05 -0.51 -8.92 15 20 H 0.26 7.25 8.31 -40.82 -0.34 6.91 15 21 H 0.12 2.38 8.06 -52.48 -0.42 1.95 15 22 H 0.12 1.68 8.06 -52.49 -0.42 1.25 15 23 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 24 H 0.14 2.42 8.06 -52.49 -0.42 1.99 15 25 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 26 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 248.98 15.07 3.75 3.75 Total: -1.00 -33.40 248.98 -6.43 -39.83 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -2.93 Total: -1.30 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: -1.65 Total: -5.19 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.56 Total: -35.19 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -1.15 Total: -19.07 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -33.40 -6.43 -39.83 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107264204.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.468 kcal (2) G-P(sol) polarization free energy of solvation -33.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds