Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00314 * 2 1 4 4 H 1.48502 * 109.47150 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47056 * 300.00232 * 3 2 1 6 6 H 1.48501 * 109.46786 * 60.00145 * 3 2 1 7 7 C 1.37888 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99882 * 184.85626 * 7 2 1 9 9 C 1.50695 * 119.99927 * 4.85935 * 7 2 1 10 10 C 1.50707 * 109.62856 * 84.59102 * 9 7 2 11 11 C 1.38228 * 119.61650 * 180.02562 * 10 9 7 12 12 C 1.38627 * 119.15892 * 179.74902 * 11 10 9 13 13 C 1.38680 * 118.41910 * 0.46501 * 12 11 10 14 14 C 1.38176 * 119.16052 * 359.51370 * 13 12 11 15 15 N 1.31850 * 119.61680 * 359.97438 * 10 9 7 16 16 O 1.43747 * 109.63054 * 204.98495 * 9 7 2 17 17 C 1.44582 * 104.92249 * 95.31936 * 16 9 7 18 18 C 1.54913 * 101.63506 * 36.26819 * 17 16 9 19 19 O 1.43369 * 109.63116 * 324.19715 * 9 7 2 20 20 H 0.96998 * 119.99720 * 359.97438 * 1 2 3 21 21 H 1.08005 * 120.42005 * 359.94970 * 11 10 9 22 22 H 1.08000 * 120.78726 * 180.22653 * 12 11 10 23 23 H 1.07997 * 120.41275 * 179.78354 * 13 12 11 24 24 H 1.08002 * 119.61724 * 180.25435 * 14 13 12 25 25 H 1.09005 * 111.08778 * 278.16081 * 17 16 9 26 26 H 1.09002 * 110.97904 * 154.33093 * 17 16 9 27 27 H 1.09001 * 110.69643 * 205.95906 * 18 17 16 28 28 H 1.08997 * 110.84307 * 82.82660 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0816 -1.1959 0.0786 9 6 1.2551 -2.4968 -0.1117 10 6 0.9913 -2.8069 -1.5627 11 6 0.3117 -3.9618 -1.9018 12 6 0.0697 -4.2351 -3.2392 13 6 0.5308 -3.3373 -4.1903 14 6 1.2024 -2.2032 -3.7757 15 7 1.4105 -1.9729 -2.4939 16 8 2.0338 -3.5535 0.4742 17 6 1.5417 -3.6717 1.8286 18 6 0.0298 -3.3935 1.6370 19 8 0.0108 -2.3983 0.5938 20 1 -0.4849 0.8400 0.0004 21 1 -0.0292 -4.6411 -1.1344 22 1 -0.4620 -5.1279 -3.5335 23 1 0.3631 -3.5202 -5.2413 24 1 1.5611 -1.4970 -4.5099 25 1 1.9968 -2.9239 2.4779 26 1 1.7074 -4.6763 2.2177 27 1 -0.4085 -2.9990 2.5537 28 1 -0.4932 -4.2953 1.3188 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107264204.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = -54.038073 kcal Electronic energy + Delta-G solvation = -15420.612940 eV Core-core repulsion = 12822.801807 eV Total energy + Delta-G solvation = -2597.811132 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.32257 -40.06798 -35.41337 -34.69954 -33.13528 -32.53405 -30.15507 -28.00380 -25.12452 -24.07206 -23.71391 -22.27747 -19.06741 -18.14170 -17.30600 -16.95050 -16.85572 -16.43611 -15.89441 -15.55453 -14.86415 -14.50136 -14.12599 -14.05805 -13.77518 -13.11179 -12.98222 -12.82116 -12.60277 -12.31838 -12.17823 -11.85549 -10.76450 -10.63538 -10.55096 -10.31166 -9.81135 -9.66718 -7.98483 -6.20436 0.34735 0.61861 1.38269 1.41067 1.52211 2.44944 2.86722 3.20544 3.24297 3.53965 3.98245 4.07080 4.12843 4.26139 4.34265 4.46619 4.49573 4.52510 4.77714 4.91448 4.97239 5.14431 5.27888 5.38254 5.43609 5.75437 6.00761 6.09143 6.45199 7.05518 7.52858 7.54307 9.02216 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.015517 C = 0.010738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.711121 B = 1804.039294 C = 2606.922188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.052 3.948 3 Si 0.947 3.053 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.548 4.548 8 H 0.045 0.955 9 C 0.405 3.595 10 C 0.124 3.876 11 C -0.173 4.173 12 C -0.084 4.084 13 C -0.172 4.172 14 C 0.063 3.937 15 N -0.473 5.473 16 O -0.409 6.409 17 C 0.026 3.974 18 C 0.003 3.997 19 O -0.354 6.354 20 H 0.254 0.746 21 H 0.129 0.871 22 H 0.170 0.830 23 H 0.173 0.827 24 H 0.168 0.832 25 H 0.058 0.942 26 H 0.131 0.869 27 H 0.094 0.906 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -8.483 -3.227 9.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.152 4.152 3 Si 0.773 3.227 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.586 4.586 8 H 0.063 0.937 9 C 0.329 3.671 10 C -0.014 4.014 11 C -0.193 4.193 12 C -0.110 4.110 13 C -0.192 4.192 14 C -0.095 4.095 15 N -0.184 5.184 16 O -0.330 6.330 17 C -0.050 4.050 18 C -0.074 4.074 19 O -0.273 6.273 20 H 0.063 0.937 21 H 0.147 0.853 22 H 0.187 0.813 23 H 0.190 0.810 24 H 0.186 0.814 25 H 0.077 0.923 26 H 0.149 0.851 27 H 0.112 0.888 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.951 -7.590 -3.099 8.253 hybrid contribution -0.006 0.375 0.061 0.380 sum -0.957 -7.214 -3.039 7.887 Atomic orbital electron populations 1.70255 1.06818 1.26084 1.48004 1.25449 0.95300 1.01387 0.93013 0.85710 0.79125 0.80306 0.77584 1.19713 1.20642 1.20165 1.21216 0.92387 0.91063 1.53938 0.93653 1.19513 0.77998 0.85389 0.84190 1.21641 0.93454 0.90110 0.96199 1.22135 1.00446 0.98156 0.98565 1.21925 0.97326 1.00243 0.91503 1.22477 0.99355 0.95120 1.02230 1.23389 0.96549 0.97268 0.92299 1.67411 1.18386 1.30749 1.01808 1.88979 1.61329 1.56940 1.25764 1.24254 0.92902 1.03367 0.84461 1.24285 0.96851 0.93183 0.93107 1.89321 1.37191 1.54923 1.45886 0.93674 0.85303 0.81266 0.80991 0.81444 0.92323 0.85133 0.88772 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.27 11.67 21.45 0.25 -53.02 15 2 C 0.05 3.07 5.39 84.66 0.46 3.53 15 3 Si 0.95 46.64 29.54 68.60 2.03 48.67 15 4 H -0.27 -13.26 7.11 99.48 0.71 -12.55 15 5 H -0.28 -13.59 7.11 99.48 0.71 -12.88 15 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 15 7 C -0.55 -32.86 7.64 25.60 0.20 -32.66 15 8 H 0.05 2.82 7.82 -2.91 -0.02 2.79 15 9 C 0.40 22.02 0.92 29.10 0.03 22.05 15 10 C 0.12 6.35 6.07 42.56 0.26 6.61 15 11 C -0.17 -7.13 9.52 22.36 0.21 -6.92 15 12 C -0.08 -2.67 10.18 22.47 0.23 -2.44 15 13 C -0.17 -5.26 10.11 22.36 0.23 -5.03 15 14 C 0.06 2.44 11.18 84.67 0.95 3.38 15 15 N -0.47 -24.11 9.11 -183.89 -1.68 -25.78 15 16 O -0.41 -20.15 10.83 -126.20 -1.37 -21.51 15 17 C 0.03 1.02 7.90 72.64 0.57 1.59 15 18 C 0.00 0.11 8.07 72.64 0.59 0.70 15 19 O -0.35 -19.00 8.60 -126.20 -1.09 -20.09 15 20 H 0.25 14.74 8.31 -92.71 -0.77 13.97 15 21 H 0.13 4.90 8.06 -2.91 -0.02 4.88 15 22 H 0.17 3.69 8.06 -2.91 -0.02 3.67 15 23 H 0.17 3.48 8.06 -2.91 -0.02 3.46 15 24 H 0.17 5.35 8.06 -2.91 -0.02 5.33 15 25 H 0.06 2.35 8.14 -2.38 -0.02 2.33 15 26 H 0.13 3.71 8.14 -2.39 -0.02 3.69 15 27 H 0.09 3.37 8.14 -2.39 -0.02 3.35 15 28 H 0.07 2.53 8.14 -2.39 -0.02 2.51 15 Total: -1.00 -75.69 248.98 3.02 -72.68 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.16 Total: 8.26 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 3.71 Total: -9.19 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -1.43 Total: -78.81 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -2.45 Total: -41.60 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.69 3.02 -72.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107264204.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.640 kcal (2) G-P(sol) polarization free energy of solvation -75.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds