Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 119.79952 * 2 1 4 4 C 1.40006 * 120.37562 * 179.72803 * 3 2 1 5 5 C 1.43196 * 120.01755 * 180.27660 * 4 3 2 6 6 N 4.80843 * 134.14863 * 0.27075 * 2 1 3 7 7 C 1.39086 * 119.97014 * 0.56360 * 4 3 2 8 8 C 1.40447 * 119.60328 * 359.71138 * 7 4 3 9 9 C 1.41382 * 120.18256 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00016 * 149.83765 * 9 8 7 11 11 C 1.39928 * 119.99883 * 329.83474 * 9 8 7 12 12 N 1.30839 * 120.00148 * 161.99906 * 11 9 8 13 13 Si 1.86802 * 120.00136 * 341.99122 * 11 9 8 14 14 H 1.48509 * 109.46726 * 95.39558 * 13 11 9 15 15 H 1.48502 * 109.47247 * 215.39339 * 13 11 9 16 16 H 1.48496 * 109.47356 * 335.40080 * 13 11 9 17 17 C 1.37921 * 119.80213 * 180.27229 * 2 1 3 18 18 Cl 1.73604 * 119.98667 * 359.97438 * 17 2 1 19 19 H 1.08998 * 109.47169 * 269.72423 * 1 2 3 20 20 H 1.09001 * 109.46585 * 149.72977 * 1 2 3 21 21 H 1.08995 * 109.47258 * 29.73090 * 1 2 3 22 22 H 1.07998 * 119.81316 * 0.02562 * 3 2 1 23 23 H 1.07992 * 120.19623 * 179.73355 * 7 4 3 24 24 H 0.96994 * 120.00066 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1997 0.0000 4 6 3.5940 1.2138 0.0057 5 6 4.2979 2.4608 0.0117 6 7 4.8562 3.4502 0.0163 7 6 4.3009 0.0160 -0.0004 8 6 3.6019 -1.2022 -0.0061 9 6 4.3082 -2.4269 -0.0118 10 1 3.8773 -3.3009 0.4540 11 6 5.5653 -2.5068 -0.6211 12 7 6.3681 -3.5001 -0.3369 13 14 6.0974 -1.1954 -1.8403 14 1 6.9053 -0.1657 -1.1385 15 1 6.9137 -1.8186 -2.9129 16 1 4.8964 -0.5591 -2.4386 17 6 2.1925 -1.1968 -0.0057 18 17 1.3189 -2.6970 -0.0121 19 1 -0.3633 -0.0049 1.0276 20 1 -0.3632 -0.8876 -0.5180 21 1 -0.3633 0.8923 -0.5096 22 1 1.6478 2.1313 0.0004 23 1 5.3808 0.0226 -0.0003 24 1 7.2397 -3.5552 -0.7589 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116312898.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 23.774091 kcal Electronic energy + Delta-G solvation = -12160.540869 eV Core-core repulsion = 9870.979995 eV Total energy + Delta-G solvation = -2289.560874 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.57380 -36.09285 -35.20012 -34.14646 -32.06284 -30.65213 -26.50469 -25.46690 -22.71293 -20.93548 -17.72234 -16.93236 -15.92257 -15.26217 -14.73857 -13.66899 -13.30130 -13.06289 -12.93539 -12.64087 -12.47741 -12.20057 -11.79687 -11.73964 -11.17646 -11.03458 -10.90171 -10.51707 -10.25439 -9.98017 -9.71637 -9.32164 -7.93151 -7.76638 -7.19988 -4.76430 1.56968 2.25090 2.93175 3.04018 3.14472 3.17812 3.32503 3.53466 3.77472 4.29735 4.56933 5.01578 5.53257 5.71165 5.91276 6.06624 6.15019 6.30748 6.47864 6.72506 6.81382 7.08400 7.12470 7.32028 7.56622 7.99136 8.08664 8.20094 8.47303 9.80137 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.016738 C = 0.009534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.362371 B = 1672.431643 C = 2936.160271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.039 4.039 3 C -0.193 4.193 4 C 0.008 3.992 5 C 0.274 3.726 6 N -0.457 5.457 7 C -0.183 4.183 8 C 0.093 3.907 9 C -0.421 4.421 10 H 0.107 0.893 11 C 0.086 3.914 12 N -0.786 5.786 13 Si 0.897 3.103 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.238 1.238 17 C -0.104 4.104 18 Cl -0.094 7.094 19 H 0.065 0.935 20 H 0.068 0.932 21 H 0.059 0.941 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 1.994 -1.066 6.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.040 4.040 3 C -0.215 4.215 4 C 0.004 3.996 5 C -0.040 4.040 6 N -0.134 5.134 7 C -0.205 4.205 8 C 0.088 3.912 9 C -0.448 4.448 10 H 0.125 0.875 11 C -0.136 4.136 12 N -0.408 5.408 13 Si 0.723 3.277 14 H -0.192 1.192 15 H -0.209 1.209 16 H -0.161 1.161 17 C -0.132 4.132 18 Cl -0.065 7.065 19 H 0.084 0.916 20 H 0.087 0.913 21 H 0.078 0.922 22 H 0.130 0.870 23 H 0.133 0.867 24 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.235 3.179 -1.068 6.217 hybrid contribution 0.255 -0.083 -0.466 0.538 sum -4.979 3.096 -1.535 6.061 Atomic orbital electron populations 1.20785 0.91817 1.02362 1.01928 1.19137 0.95066 0.91221 0.98593 1.20062 0.90940 0.96403 1.14104 1.15818 0.92408 0.85734 1.05624 1.26211 0.92444 0.92883 0.92454 1.81107 1.09737 1.11853 1.10656 1.21021 0.98515 0.90493 1.10471 1.17303 0.89784 0.92962 0.91104 1.19604 0.99224 0.96665 1.29317 0.87536 1.26188 0.94877 0.96213 0.96315 1.69662 1.07737 1.29181 1.34226 0.86499 0.80579 0.80394 0.80278 1.19221 1.20909 1.16103 1.20785 0.91529 0.84592 1.16297 1.98238 1.76122 1.34952 1.97219 0.91580 0.91320 0.92155 0.86967 0.86666 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.63 9.60 36.01 0.35 -1.29 14 2 C -0.04 -0.72 5.87 -104.73 -0.61 -1.33 14 3 C -0.19 -3.52 9.39 -38.91 -0.37 -3.89 14 4 C 0.01 0.16 5.72 -107.00 -0.61 -0.46 14 5 C 0.27 5.43 15.32 -22.47 -0.34 5.09 14 6 N -0.46 -9.36 18.54 41.84 0.78 -8.58 14 7 C -0.18 -3.99 6.87 -38.44 -0.26 -4.25 14 8 C 0.09 2.11 5.10 -106.84 -0.54 1.56 14 9 C -0.42 -10.26 8.95 -37.75 -0.34 -10.60 14 10 H 0.11 2.73 7.41 -52.49 -0.39 2.35 14 11 C 0.09 2.06 5.40 -17.34 -0.09 1.97 14 12 N -0.79 -19.27 13.93 55.55 0.77 -18.49 14 13 Si 0.90 19.14 24.52 -169.99 -4.17 14.97 14 14 H -0.27 -5.63 6.71 56.52 0.38 -5.25 14 15 H -0.28 -5.83 7.11 56.52 0.40 -5.43 14 16 H -0.24 -5.14 6.86 56.52 0.39 -4.75 14 17 C -0.10 -2.15 6.37 -38.67 -0.25 -2.40 14 18 Cl -0.09 -1.80 25.95 -51.86 -1.35 -3.15 14 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 14 20 H 0.07 0.99 6.87 -51.93 -0.36 0.63 14 21 H 0.06 0.76 8.08 -51.93 -0.42 0.34 14 22 H 0.11 1.78 8.06 -52.49 -0.42 1.35 14 23 H 0.12 2.54 4.76 -52.49 -0.25 2.29 14 24 H 0.29 6.44 8.30 -40.82 -0.34 6.11 14 LS Contribution 233.82 15.07 3.52 3.52 Total: -1.00 -24.28 233.82 -4.95 -29.23 By element: Atomic # 1 Polarization: -0.48 SS G_CDS: -1.43 Total: -1.91 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -3.08 Total: -15.60 kcal Atomic # 7 Polarization: -28.62 SS G_CDS: 1.55 Total: -27.07 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.17 Total: 14.97 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -1.35 Total: -3.15 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -24.28 -4.95 -29.23 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116312898.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.003 kcal (2) G-P(sol) polarization free energy of solvation -24.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds