Wall clock time and date at job start Mon Mar 30 2020 02:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 119.79952 * 2 1 4 4 C 1.40006 * 120.37562 * 179.72803 * 3 2 1 5 5 C 1.43196 * 120.01755 * 180.27660 * 4 3 2 6 6 N 4.80843 * 134.14863 * 0.27075 * 2 1 3 7 7 C 1.39086 * 119.97014 * 0.56360 * 4 3 2 8 8 C 1.40447 * 119.60328 * 359.71138 * 7 4 3 9 9 C 1.41382 * 120.18256 * 180.02562 * 8 7 4 10 10 H 1.07997 * 120.00016 * 149.83765 * 9 8 7 11 11 C 1.39928 * 119.99883 * 329.83474 * 9 8 7 12 12 N 1.30839 * 120.00148 * 161.99906 * 11 9 8 13 13 Si 1.86802 * 120.00136 * 341.99122 * 11 9 8 14 14 H 1.48509 * 109.46726 * 95.39558 * 13 11 9 15 15 H 1.48502 * 109.47247 * 215.39339 * 13 11 9 16 16 H 1.48496 * 109.47356 * 335.40080 * 13 11 9 17 17 C 1.37921 * 119.80213 * 180.27229 * 2 1 3 18 18 Cl 1.73604 * 119.98667 * 359.97438 * 17 2 1 19 19 H 1.08998 * 109.47169 * 269.72423 * 1 2 3 20 20 H 1.09001 * 109.46585 * 149.72977 * 1 2 3 21 21 H 1.08995 * 109.47258 * 29.73090 * 1 2 3 22 22 H 1.07998 * 119.81316 * 0.02562 * 3 2 1 23 23 H 1.07992 * 120.19623 * 179.73355 * 7 4 3 24 24 H 0.96994 * 120.00066 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1941 1.1997 0.0000 4 6 3.5940 1.2138 0.0057 5 6 4.2979 2.4608 0.0117 6 7 4.8562 3.4502 0.0163 7 6 4.3009 0.0160 -0.0004 8 6 3.6019 -1.2022 -0.0061 9 6 4.3082 -2.4269 -0.0118 10 1 3.8773 -3.3009 0.4540 11 6 5.5653 -2.5068 -0.6211 12 7 6.3681 -3.5001 -0.3369 13 14 6.0974 -1.1954 -1.8403 14 1 6.9053 -0.1657 -1.1385 15 1 6.9137 -1.8186 -2.9129 16 1 4.8964 -0.5591 -2.4386 17 6 2.1925 -1.1968 -0.0057 18 17 1.3189 -2.6970 -0.0121 19 1 -0.3633 -0.0049 1.0276 20 1 -0.3632 -0.8876 -0.5180 21 1 -0.3633 0.8923 -0.5096 22 1 1.6478 2.1313 0.0004 23 1 5.3808 0.0226 -0.0003 24 1 7.2397 -3.5552 -0.7589 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116312898.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:05 Heat of formation + Delta-G solvation = 11.654777 kcal Electronic energy + Delta-G solvation = -12161.066402 eV Core-core repulsion = 9870.979995 eV Total energy + Delta-G solvation = -2290.086406 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.030 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.19019 -37.69253 -36.79078 -35.82068 -33.60726 -32.30190 -27.93216 -27.12573 -24.32946 -22.56124 -19.34604 -18.63119 -17.55514 -16.88023 -16.39331 -15.20100 -14.96798 -14.63993 -14.36055 -14.23040 -14.00195 -13.81346 -13.37171 -13.10245 -12.73439 -12.60026 -12.49392 -12.08392 -11.87441 -11.65553 -11.36076 -10.96896 -9.57938 -9.33701 -8.95315 -6.55889 -0.05824 0.63433 1.23792 1.32577 1.44615 1.59251 1.72212 1.91974 2.05522 2.62245 2.96537 3.31374 4.05540 4.34024 4.46313 4.64374 4.94013 4.95729 4.99380 5.15520 5.31949 5.49736 5.55351 5.70526 5.98691 6.23720 6.42474 6.48171 6.70032 8.11098 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.019288 B = 0.016738 C = 0.009534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.362371 B = 1672.431643 C = 2936.160271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 C -0.164 4.164 4 C 0.004 3.996 5 C 0.285 3.715 6 N -0.466 5.466 7 C -0.198 4.198 8 C 0.081 3.919 9 C -0.455 4.455 10 H 0.080 0.920 11 C 0.059 3.941 12 N -0.830 5.830 13 Si 0.938 3.062 14 H -0.266 1.266 15 H -0.274 1.274 16 H -0.242 1.242 17 C -0.111 4.111 18 Cl -0.084 7.084 19 H 0.083 0.917 20 H 0.068 0.932 21 H 0.088 0.912 22 H 0.150 0.850 23 H 0.107 0.893 24 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.202 4.099 -1.417 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.040 4.040 3 C -0.185 4.185 4 C 0.000 4.000 5 C -0.029 4.029 6 N -0.142 5.142 7 C -0.220 4.220 8 C 0.077 3.923 9 C -0.483 4.483 10 H 0.098 0.902 11 C -0.159 4.159 12 N -0.455 5.455 13 Si 0.761 3.239 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.165 1.165 17 C -0.140 4.140 18 Cl -0.055 7.055 19 H 0.102 0.898 20 H 0.087 0.913 21 H 0.107 0.893 22 H 0.168 0.832 23 H 0.125 0.875 24 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.182 5.287 -1.419 9.031 hybrid contribution 0.616 -0.586 -0.299 0.901 sum -6.567 4.701 -1.718 8.257 Atomic orbital electron populations 1.20877 0.88508 1.03876 1.03471 1.19624 0.97451 0.90111 0.96843 1.20588 0.90242 0.97915 1.09777 1.15891 0.93268 0.85078 1.05750 1.26048 0.92184 0.92576 0.92131 1.81131 1.09799 1.12312 1.10965 1.20994 0.98400 0.91009 1.11583 1.17417 0.90873 0.92693 0.91321 1.19486 1.00310 0.96674 1.31852 0.90206 1.26645 0.94795 0.97363 0.97051 1.69689 1.08584 1.30992 1.36199 0.85882 0.80099 0.78815 0.79075 1.19167 1.19980 1.16479 1.21120 0.91297 0.86170 1.15372 1.98241 1.75554 1.34592 1.97123 0.89844 0.91298 0.89300 0.83232 0.87519 0.89290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.68 9.60 71.24 0.68 -2.00 14 2 C -0.04 -1.29 5.87 -19.94 -0.12 -1.41 14 3 C -0.16 -5.23 9.39 22.70 0.21 -5.02 14 4 C 0.00 0.14 5.72 -21.40 -0.12 0.02 14 5 C 0.28 10.48 15.32 88.33 1.35 11.84 14 6 N -0.47 -17.86 18.54 19.00 0.35 -17.51 14 7 C -0.20 -8.44 6.87 23.01 0.16 -8.29 14 8 C 0.08 3.65 5.10 -21.30 -0.11 3.54 14 9 C -0.45 -22.88 8.95 23.45 0.21 -22.67 14 10 H 0.08 4.31 7.41 -2.91 -0.02 4.29 14 11 C 0.06 2.91 5.40 85.25 0.46 3.37 14 12 N -0.83 -42.38 13.93 21.82 0.30 -42.07 14 13 Si 0.94 39.70 24.52 68.60 1.68 41.39 14 14 H -0.27 -11.07 6.71 99.48 0.67 -10.40 14 15 H -0.27 -11.01 7.11 99.48 0.71 -10.30 14 16 H -0.24 -10.19 6.86 99.48 0.68 -9.51 14 17 C -0.11 -4.43 6.37 22.86 0.15 -4.29 14 18 Cl -0.08 -3.13 25.95 -2.72 -0.07 -3.20 14 19 H 0.08 1.80 8.14 -2.39 -0.02 1.78 14 20 H 0.07 1.70 6.87 -2.39 -0.02 1.68 14 21 H 0.09 1.69 8.08 -2.39 -0.02 1.67 14 22 H 0.15 3.76 8.06 -2.91 -0.02 3.74 14 23 H 0.11 4.70 4.76 -2.91 -0.01 4.69 14 24 H 0.30 13.67 8.30 -92.71 -0.77 12.90 14 Total: -1.00 -52.08 233.82 6.32 -45.76 By element: Atomic # 1 Polarization: -0.63 SS G_CDS: 1.17 Total: 0.55 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 2.88 Total: -24.91 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.66 Total: -59.59 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 1.68 Total: 41.39 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -0.07 Total: -3.20 kcal Total: -52.08 6.32 -45.76 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116312898.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.418 kcal (2) G-P(sol) polarization free energy of solvation -52.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds