Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38267 * 119.88426 * 2 1 4 4 C 1.38999 * 120.23723 * 179.97438 * 3 2 1 5 5 N 1.39717 * 119.99679 * 180.02562 * 4 3 2 6 6 C 1.38652 * 120.00206 * 0.02562 * 4 3 2 7 7 C 1.39540 * 119.76511 * 359.97438 * 6 4 3 8 8 C 1.47683 * 120.11684 * 180.02562 * 7 6 4 9 9 O 1.21507 * 119.99743 * 180.02562 * 8 7 6 10 10 O 1.34729 * 119.99920 * 0.02562 * 8 7 6 11 11 C 1.34854 * 116.99795 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99981 * 359.72979 * 11 10 8 13 13 C 1.38817 * 120.00064 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99462 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99909 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46605 * 120.00512 * 15 13 11 18 18 H 1.48496 * 109.46902 * 240.00127 * 15 13 11 19 19 C 1.37959 * 119.88320 * 180.28037 * 2 1 3 20 20 H 1.09006 * 109.47199 * 90.00045 * 1 2 3 21 21 H 1.08997 * 109.47116 * 209.99673 * 1 2 3 22 22 H 1.09001 * 109.47425 * 330.00250 * 1 2 3 23 23 H 1.08001 * 119.87922 * 0.02607 * 3 2 1 24 24 H 0.96996 * 119.99769 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00021 * 359.97431 * 5 4 3 26 26 H 1.08002 * 120.11479 * 180.02562 * 6 4 3 27 27 H 0.96996 * 119.99337 * 179.97438 * 14 13 11 28 28 H 1.08004 * 120.00001 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5858 1.2074 0.0005 5 7 4.2769 2.4217 0.0011 6 6 4.2865 0.0109 0.0005 7 6 3.5913 -1.1990 0.0005 8 6 4.3298 -2.4779 0.0011 9 8 3.7223 -3.5302 0.0006 10 8 5.6771 -2.4778 0.0022 11 6 6.2894 -3.6793 0.0032 12 1 5.7012 -4.5851 0.0075 13 6 7.6757 -3.7520 0.0037 14 7 8.3913 -2.6497 0.0038 15 14 8.5237 -5.4164 0.0059 16 1 7.5010 -6.4930 0.0061 17 1 9.3727 -5.5407 -1.2061 18 1 9.3717 -5.5382 1.2188 19 6 2.1943 -1.1962 -0.0059 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6520 2.1319 0.0004 24 1 5.2468 2.4277 0.0018 25 1 3.7867 3.2587 0.0007 26 1 5.3665 0.0155 0.0014 27 1 9.3599 -2.7005 0.0046 28 1 1.6524 -2.1304 -0.0108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131966343.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = -63.515482 kcal Electronic energy + Delta-G solvation = -14237.466239 eV Core-core repulsion = 11639.244135 eV Total energy + Delta-G solvation = -2598.222104 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.49393 -38.29998 -35.21819 -34.42589 -32.32300 -31.87902 -28.61161 -26.64358 -25.58258 -23.32330 -20.99030 -19.84511 -17.72816 -17.13504 -16.29791 -15.69121 -15.37326 -14.47496 -14.44373 -14.37083 -13.81542 -13.53918 -12.87791 -12.43581 -12.30479 -11.95948 -11.66299 -11.25617 -11.11935 -10.94132 -10.53129 -10.40403 -10.03317 -9.81552 -9.02953 -8.59847 -8.36425 -7.25113 -6.44819 -4.07031 1.40078 1.92682 3.12962 3.19063 3.27008 3.61651 3.93544 4.07260 4.46235 4.59755 5.07980 5.16919 5.39354 5.45821 5.73763 5.74690 5.88915 5.96315 6.11371 6.18801 6.60051 6.71049 6.89627 7.12464 7.18314 7.40319 7.72938 7.94164 7.96823 8.73373 9.04558 9.86870 10.73294 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.007119 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.562607 B = 3932.336744 C = 4586.754124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.058 4.058 3 C -0.187 4.187 4 C 0.203 3.797 5 N -0.882 5.882 6 C -0.152 4.152 7 C -0.038 4.038 8 C 0.432 3.568 9 O -0.552 6.552 10 O -0.205 6.205 11 C -0.374 4.374 12 H 0.098 0.902 13 C 0.040 3.960 14 N -0.860 5.860 15 Si 0.944 3.056 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.276 1.276 19 C -0.127 4.127 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.399 0.601 25 H 0.394 0.606 26 H 0.138 0.862 27 H 0.270 0.730 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 9.200 -0.023 12.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.059 4.059 3 C -0.210 4.210 4 C 0.100 3.900 5 N -0.422 5.422 6 C -0.175 4.175 7 C -0.040 4.040 8 C 0.280 3.720 9 O -0.451 6.451 10 O -0.112 6.112 11 C -0.450 4.450 12 H 0.116 0.884 13 C -0.164 4.164 14 N -0.497 5.497 15 Si 0.769 3.231 16 H -0.188 1.188 17 H -0.201 1.201 18 H -0.201 1.201 19 C -0.147 4.147 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.081 0.919 23 H 0.134 0.866 24 H 0.228 0.772 25 H 0.221 0.779 26 H 0.156 0.844 27 H 0.080 0.920 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.627 8.941 -0.021 12.424 hybrid contribution 0.754 -0.369 -0.002 0.839 sum -7.873 8.572 -0.023 11.639 Atomic orbital electron populations 1.20740 0.91266 1.02470 1.02098 1.19449 0.95568 0.92219 0.98679 1.20447 0.91865 0.97705 1.11016 1.17633 0.91194 0.86392 0.94807 1.42393 1.09029 1.04610 1.86124 1.21023 1.00767 0.89994 1.05679 1.19121 0.92979 0.91261 1.00624 1.20838 0.82944 0.88429 0.79759 1.90614 1.69598 1.33446 1.51432 1.83901 1.17371 1.35071 1.74865 1.21375 0.89381 0.83068 1.51149 0.88437 1.25379 0.95232 0.99554 0.96226 1.69987 1.06488 1.27288 1.45949 0.85586 0.79121 0.80292 0.78131 1.18826 1.20122 1.20123 1.20844 0.92416 0.97918 1.03554 0.91343 0.91464 0.91881 0.86550 0.77225 0.77904 0.84402 0.92045 0.85318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.00 36.00 0.36 -0.87 15 2 C -0.06 -0.89 5.87 -104.72 -0.61 -1.50 15 3 C -0.19 -2.69 9.53 -39.29 -0.37 -3.06 15 4 C 0.20 3.19 6.75 -83.83 -0.57 2.63 15 5 N -0.88 -10.49 9.09 32.39 0.29 -10.20 15 6 C -0.15 -2.97 9.46 -38.94 -0.37 -3.34 15 7 C -0.04 -0.83 5.87 -105.01 -0.62 -1.44 15 8 C 0.43 11.58 7.84 34.59 0.27 11.85 15 9 O -0.55 -15.79 15.59 -19.27 -0.30 -16.09 15 10 O -0.21 -6.07 8.99 -21.63 -0.19 -6.27 15 11 C -0.37 -11.26 9.65 30.95 0.30 -10.97 15 12 H 0.10 2.96 6.86 -52.49 -0.36 2.60 15 13 C 0.04 1.15 5.50 -17.52 -0.10 1.05 15 14 N -0.86 -25.13 13.67 55.49 0.76 -24.37 15 15 Si 0.94 21.39 29.55 -169.99 -5.02 16.37 15 16 H -0.26 -5.91 7.11 56.52 0.40 -5.51 15 17 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 19 C -0.13 -2.39 9.24 -39.14 -0.36 -2.75 15 20 H 0.07 0.70 8.14 -51.93 -0.42 0.27 15 21 H 0.07 0.73 8.08 -51.93 -0.42 0.31 15 22 H 0.06 0.59 8.08 -51.93 -0.42 0.17 15 23 H 0.12 1.32 8.06 -52.49 -0.42 0.90 15 24 H 0.40 4.48 8.84 -40.82 -0.36 4.12 15 25 H 0.39 3.54 8.84 -40.82 -0.36 3.18 15 26 H 0.14 2.86 7.61 -52.49 -0.40 2.46 15 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 28 H 0.13 2.42 7.64 -52.48 -0.40 2.01 15 LS Contribution 258.38 15.07 3.89 3.89 Total: -1.00 -33.62 258.38 -5.34 -38.96 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -2.70 Total: 6.10 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.07 Total: -8.39 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 1.05 Total: -34.57 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: -0.49 Total: -22.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -33.62 -5.34 -38.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131966343.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.557 kcal (2) G-P(sol) polarization free energy of solvation -33.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds