Wall clock time and date at job start Mon Mar 30 2020 03:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38267 * 119.88426 * 2 1 4 4 C 1.38999 * 120.23723 * 179.97438 * 3 2 1 5 5 N 1.39717 * 119.99679 * 180.02562 * 4 3 2 6 6 C 1.38652 * 120.00206 * 0.02562 * 4 3 2 7 7 C 1.39540 * 119.76511 * 359.97438 * 6 4 3 8 8 C 1.47683 * 120.11684 * 180.02562 * 7 6 4 9 9 O 1.21507 * 119.99743 * 180.02562 * 8 7 6 10 10 O 1.34729 * 119.99920 * 0.02562 * 8 7 6 11 11 C 1.34854 * 116.99795 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99981 * 359.72979 * 11 10 8 13 13 C 1.38817 * 120.00064 * 179.97438 * 11 10 8 14 14 N 1.31416 * 119.99462 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99909 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46996 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46605 * 120.00512 * 15 13 11 18 18 H 1.48496 * 109.46902 * 240.00127 * 15 13 11 19 19 C 1.37959 * 119.88320 * 180.28037 * 2 1 3 20 20 H 1.09006 * 109.47199 * 90.00045 * 1 2 3 21 21 H 1.08997 * 109.47116 * 209.99673 * 1 2 3 22 22 H 1.09001 * 109.47425 * 330.00250 * 1 2 3 23 23 H 1.08001 * 119.87922 * 0.02607 * 3 2 1 24 24 H 0.96996 * 119.99769 * 179.97438 * 5 4 3 25 25 H 0.96999 * 120.00021 * 359.97431 * 5 4 3 26 26 H 1.08002 * 120.11479 * 180.02562 * 6 4 3 27 27 H 0.96996 * 119.99337 * 179.97438 * 14 13 11 28 28 H 1.08004 * 120.00001 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1959 1.1988 0.0000 4 6 3.5858 1.2074 0.0005 5 7 4.2769 2.4217 0.0011 6 6 4.2865 0.0109 0.0005 7 6 3.5913 -1.1990 0.0005 8 6 4.3298 -2.4779 0.0011 9 8 3.7223 -3.5302 0.0006 10 8 5.6771 -2.4778 0.0022 11 6 6.2894 -3.6793 0.0032 12 1 5.7012 -4.5851 0.0075 13 6 7.6757 -3.7520 0.0037 14 7 8.3913 -2.6497 0.0038 15 14 8.5237 -5.4164 0.0059 16 1 7.5010 -6.4930 0.0061 17 1 9.3727 -5.5407 -1.2061 18 1 9.3717 -5.5382 1.2188 19 6 2.1943 -1.1962 -0.0059 20 1 -0.3634 0.0000 -1.0277 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5138 23 1 1.6520 2.1319 0.0004 24 1 5.2468 2.4277 0.0018 25 1 3.7867 3.2587 0.0007 26 1 5.3665 0.0155 0.0014 27 1 9.3599 -2.7005 0.0046 28 1 1.6524 -2.1304 -0.0108 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131966343.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:59 Heat of formation + Delta-G solvation = -87.069368 kcal Electronic energy + Delta-G solvation = -14238.487612 eV Core-core repulsion = 11639.244135 eV Total energy + Delta-G solvation = -2599.243477 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.29342 -39.99097 -37.31835 -35.68398 -34.40576 -33.39128 -29.85069 -28.03929 -27.48349 -25.08436 -22.26447 -21.64927 -19.92902 -18.83872 -17.60065 -17.34066 -16.83591 -16.60578 -16.25137 -16.07023 -15.18420 -14.67454 -14.52629 -14.01948 -13.65184 -13.44718 -13.17517 -12.96827 -12.46401 -12.45493 -12.34146 -12.19625 -12.01960 -11.39956 -11.15245 -10.74361 -9.73305 -8.60378 -8.48016 -6.37588 -0.13291 0.57175 1.32121 1.35344 1.51433 1.82525 2.08709 2.68503 2.81899 3.00559 3.04735 3.87948 4.12177 4.35145 4.44911 4.51088 4.57193 4.91072 4.93252 4.98300 5.11684 5.24367 5.27231 5.52854 5.68695 5.77287 5.88045 6.54060 6.57567 6.84070 7.05318 7.69452 8.60714 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.007119 C = 0.006103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.562607 B = 3932.336744 C = 4586.754124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.046 4.046 3 C -0.167 4.167 4 C 0.213 3.787 5 N -0.864 5.864 6 C -0.172 4.172 7 C -0.073 4.073 8 C 0.429 3.571 9 O -0.582 6.582 10 O -0.231 6.231 11 C -0.423 4.423 12 H 0.082 0.918 13 C -0.002 4.002 14 N -0.897 5.897 15 Si 1.022 2.978 16 H -0.265 1.265 17 H -0.257 1.257 18 H -0.257 1.257 19 C -0.141 4.141 20 H 0.085 0.915 21 H 0.068 0.932 22 H 0.093 0.907 23 H 0.165 0.835 24 H 0.404 0.596 25 H 0.413 0.587 26 H 0.112 0.888 27 H 0.281 0.719 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.944 11.114 -0.027 14.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.047 4.047 3 C -0.190 4.190 4 C 0.108 3.892 5 N -0.404 5.404 6 C -0.196 4.196 7 C -0.075 4.075 8 C 0.279 3.721 9 O -0.482 6.482 10 O -0.139 6.139 11 C -0.499 4.499 12 H 0.099 0.901 13 C -0.203 4.203 14 N -0.533 5.533 15 Si 0.840 3.160 16 H -0.189 1.189 17 H -0.181 1.181 18 H -0.181 1.181 19 C -0.162 4.162 20 H 0.104 0.896 21 H 0.087 0.913 22 H 0.112 0.888 23 H 0.183 0.817 24 H 0.232 0.768 25 H 0.244 0.756 26 H 0.130 0.870 27 H 0.091 0.909 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -9.866 10.927 -0.025 14.722 hybrid contribution 0.987 -0.760 -0.002 1.245 sum -8.879 10.167 -0.027 13.499 Atomic orbital electron populations 1.20852 0.87779 1.04119 1.03665 1.19913 0.97885 0.90898 0.95996 1.20966 0.91084 0.99259 1.07689 1.17654 0.92040 0.86154 0.93399 1.42355 1.09471 1.04129 1.84485 1.20815 0.99704 0.91089 1.07974 1.19010 0.94037 0.89518 1.04945 1.21938 0.82347 0.90277 0.77555 1.90550 1.69861 1.35192 1.52554 1.83929 1.18814 1.35054 1.76090 1.21581 0.90536 0.82971 1.54806 0.90069 1.26629 0.94924 1.04382 0.94388 1.70064 1.07434 1.29823 1.45998 0.84525 0.77794 0.74233 0.79478 1.18906 1.18085 1.18084 1.20920 0.91031 0.99438 1.04772 0.89629 0.91328 0.88834 0.81745 0.76752 0.75567 0.86970 0.90931 0.86326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.96 10.00 71.23 0.71 -1.25 15 2 C -0.05 -1.27 5.87 -19.93 -0.12 -1.39 15 3 C -0.17 -4.09 9.53 22.46 0.21 -3.87 15 4 C 0.21 6.26 6.75 38.17 0.26 6.52 15 5 N -0.86 -18.00 9.09 -51.45 -0.47 -18.47 15 6 C -0.17 -6.95 9.46 22.68 0.21 -6.73 15 7 C -0.07 -3.36 5.87 -20.11 -0.12 -3.47 15 8 C 0.43 24.69 7.84 70.32 0.55 25.24 15 9 O -0.58 -35.60 15.59 19.81 0.31 -35.29 15 10 O -0.23 -14.69 8.99 11.37 0.10 -14.59 15 11 C -0.42 -27.11 9.65 67.96 0.66 -26.45 15 12 H 0.08 5.28 6.86 -2.91 -0.02 5.26 15 13 C 0.00 -0.14 5.50 84.89 0.47 0.32 15 14 N -0.90 -53.88 13.67 21.64 0.30 -53.58 15 15 Si 1.02 44.49 29.55 68.60 2.03 46.51 15 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 15 17 H -0.26 -10.34 7.11 99.48 0.71 -9.63 15 18 H -0.26 -10.33 7.11 99.48 0.71 -9.63 15 19 C -0.14 -5.34 9.24 22.56 0.21 -5.14 15 20 H 0.09 1.35 8.14 -2.38 -0.02 1.33 15 21 H 0.07 1.27 8.08 -2.39 -0.02 1.25 15 22 H 0.09 1.19 8.08 -2.39 -0.02 1.17 15 23 H 0.17 2.54 8.06 -2.91 -0.02 2.52 15 24 H 0.40 8.30 8.84 -92.71 -0.82 7.48 15 25 H 0.41 5.58 8.84 -92.71 -0.82 4.76 15 26 H 0.11 5.00 7.61 -2.91 -0.02 4.98 15 27 H 0.28 15.13 8.31 -92.71 -0.77 14.36 15 28 H 0.12 4.62 7.64 -2.91 -0.02 4.60 15 Total: -1.00 -78.78 258.38 4.88 -73.90 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -0.43 Total: 17.73 kcal Atomic # 6 Polarization: -19.27 SS G_CDS: 3.05 Total: -16.22 kcal Atomic # 7 Polarization: -71.87 SS G_CDS: -0.17 Total: -72.05 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: 0.41 Total: -49.88 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -78.78 4.88 -73.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131966343.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.166 kcal (2) G-P(sol) polarization free energy of solvation -78.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds