Wall clock time and date at job start Mon Mar 30 2020 02:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99960 * 2 1 4 4 H 1.48497 * 109.47032 * 269.99740 * 3 2 1 5 5 H 1.48502 * 109.46974 * 30.00118 * 3 2 1 6 6 H 1.48503 * 109.46528 * 149.99772 * 3 2 1 7 7 C 1.37872 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99443 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00526 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.70495 * 60.58810 * 9 7 2 11 11 C 1.53463 * 109.74812 * 181.19820 * 9 7 2 12 12 O 1.43169 * 108.26796 * 179.40553 * 11 9 7 13 13 C 1.36110 * 116.71307 * 313.82557 * 12 11 9 14 14 C 1.38708 * 119.40006 * 197.09777 * 13 12 11 15 15 C 1.38199 * 120.06341 * 180.35648 * 14 13 12 16 16 C 1.38255 * 120.11465 * 0.02562 * 15 14 13 17 17 C 1.38196 * 120.11173 * 0.17364 * 16 15 14 18 18 C 1.38703 * 120.06576 * 359.47653 * 17 16 15 19 19 O 1.36100 * 119.39407 * 180.56771 * 18 17 16 20 20 H 0.97007 * 119.99780 * 359.97438 * 1 2 3 21 21 H 1.00900 * 111.00141 * 299.41468 * 10 9 7 22 22 H 1.00906 * 111.00147 * 63.36748 * 10 9 7 23 23 H 1.09005 * 109.70868 * 299.10527 * 11 9 7 24 24 H 1.09008 * 109.70888 * 59.71479 * 11 9 7 25 25 H 1.08000 * 119.96608 * 0.37946 * 14 13 12 26 26 H 1.07999 * 119.93628 * 180.02562 * 15 14 13 27 27 H 1.08002 * 119.93919 * 179.88798 * 16 15 14 28 28 H 1.07998 * 119.96433 * 179.74133 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 7 0.4156 -2.5877 -1.2068 11 6 2.2423 -3.6702 0.0281 12 8 1.4945 -4.8910 0.0403 13 6 0.4477 -4.9587 0.9077 14 6 -0.0883 -6.1960 1.2327 15 6 -1.1560 -6.2801 2.1062 16 6 -1.6930 -5.1317 2.6579 17 6 -1.1662 -3.8956 2.3350 18 6 -0.0900 -3.8047 1.4647 19 8 0.4254 -2.5811 1.1652 20 1 -0.4850 0.8401 0.0004 21 1 -0.2577 -1.8368 -1.2361 22 1 0.9836 -2.5967 -2.0407 23 1 2.8773 -3.6370 -0.8573 24 1 2.8583 -3.6077 0.9252 25 1 0.3293 -7.0946 0.8031 26 1 -1.5715 -7.2446 2.3582 27 1 -2.5285 -5.2006 3.3388 28 1 -1.5902 -2.9998 2.7642 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149279606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:56 Heat of formation + Delta-G solvation = -68.029128 kcal Electronic energy + Delta-G solvation = -15274.025932 eV Core-core repulsion = 12675.608102 eV Total energy + Delta-G solvation = -2598.417830 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.79215 -38.55871 -37.81405 -35.47524 -33.16983 -31.38288 -30.34755 -28.74198 -27.13505 -24.27761 -23.41815 -20.95909 -19.76843 -18.78644 -17.81416 -17.22753 -16.83967 -16.20680 -15.82658 -15.45070 -15.20323 -14.75933 -14.58743 -14.43071 -14.07930 -13.27481 -12.91895 -12.81581 -12.61958 -12.57519 -12.11102 -12.00446 -11.82011 -10.97371 -10.85567 -9.47581 -9.40805 -8.66896 -8.26470 -6.60121 0.51248 0.63635 1.36852 1.39390 1.49684 2.27920 2.42997 2.71058 2.96478 3.27069 3.67027 3.97773 4.17500 4.26224 4.37104 4.51353 4.63009 4.74218 4.76106 5.15433 5.38471 5.46910 5.52443 5.65342 5.73421 5.97749 6.18442 6.50106 6.66015 6.71136 7.12085 7.36384 8.71006 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.046938 B = 0.009608 C = 0.008610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.386185 B = 2913.619391 C = 3251.434064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.040 3.960 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.580 4.580 8 H 0.075 0.925 9 C 0.353 3.647 10 N -0.852 5.852 11 C 0.048 3.952 12 O -0.318 6.318 13 C 0.028 3.972 14 C -0.128 4.128 15 C -0.126 4.126 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.042 3.958 19 O -0.314 6.314 20 H 0.270 0.730 21 H 0.351 0.649 22 H 0.339 0.661 23 H 0.123 0.877 24 H 0.059 0.941 25 H 0.146 0.854 26 H 0.167 0.833 27 H 0.158 0.842 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -7.557 2.129 7.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.166 4.166 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.618 4.618 8 H 0.093 0.907 9 C 0.226 3.774 10 N -0.390 5.390 11 C -0.028 4.028 12 O -0.232 6.232 13 C -0.017 4.017 14 C -0.147 4.147 15 C -0.144 4.144 16 C -0.133 4.133 17 C -0.172 4.172 18 C -0.005 4.005 19 O -0.226 6.226 20 H 0.079 0.921 21 H 0.167 0.833 22 H 0.152 0.848 23 H 0.141 0.859 24 H 0.077 0.923 25 H 0.163 0.837 26 H 0.184 0.816 27 H 0.176 0.824 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.779 -8.108 2.420 8.497 hybrid contribution 0.895 2.280 -0.356 2.475 sum 0.116 -5.828 2.064 6.184 Atomic orbital electron populations 1.69945 1.07416 1.28345 1.46238 1.25896 0.95695 1.02997 0.91996 0.85361 0.78465 0.77929 0.78650 1.19198 1.20890 1.19252 1.21711 0.93669 0.90632 1.55795 0.90669 1.20337 0.84652 0.92799 0.79607 1.59061 1.21210 1.54313 1.04387 1.23549 0.93286 0.82655 1.03320 1.86074 1.41279 1.37932 1.57958 1.19327 0.92007 0.94357 0.96017 1.20726 0.99110 0.94286 1.00540 1.21181 0.96062 0.99843 0.97284 1.21185 1.00741 0.90523 1.00825 1.20699 0.95477 0.99730 1.01315 1.19739 0.95821 0.85954 0.98954 1.86784 1.64805 1.25971 1.45021 0.92052 0.83342 0.84817 0.85863 0.92252 0.83674 0.81574 0.82417 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -48.83 11.12 21.45 0.24 -48.59 15 2 C 0.04 2.08 5.32 84.65 0.45 2.53 15 3 Si 0.97 41.25 29.54 68.60 2.03 43.28 15 4 H -0.27 -10.83 7.11 99.48 0.71 -10.12 15 5 H -0.28 -11.99 7.11 99.48 0.71 -11.28 15 6 H -0.27 -11.16 7.11 99.48 0.71 -10.45 15 7 C -0.58 -30.65 8.46 25.60 0.22 -30.43 15 8 H 0.08 3.80 7.75 -2.91 -0.02 3.78 15 9 C 0.35 18.01 0.76 44.32 0.03 18.04 15 10 N -0.85 -42.10 8.78 -265.78 -2.33 -44.43 15 11 C 0.05 2.14 6.13 72.14 0.44 2.58 15 12 O -0.32 -14.09 10.26 -82.57 -0.85 -14.94 15 13 C 0.03 1.22 6.46 22.56 0.15 1.37 15 14 C -0.13 -4.40 9.96 22.37 0.22 -4.18 15 15 C -0.13 -3.58 10.04 22.26 0.22 -3.36 15 16 C -0.11 -3.56 10.04 22.26 0.22 -3.33 15 17 C -0.15 -6.28 9.96 22.37 0.22 -6.06 15 18 C 0.04 2.00 6.37 22.56 0.14 2.14 15 19 O -0.31 -17.26 9.36 -82.45 -0.77 -18.04 15 20 H 0.27 14.12 8.31 -92.70 -0.77 13.35 15 21 H 0.35 18.76 7.06 -89.69 -0.63 18.12 15 22 H 0.34 15.22 9.00 -89.69 -0.81 14.41 15 23 H 0.12 4.80 8.14 -2.38 -0.02 4.78 15 24 H 0.06 2.60 8.14 -2.38 -0.02 2.58 15 25 H 0.15 4.19 8.06 -2.91 -0.02 4.17 15 26 H 0.17 3.18 8.06 -2.91 -0.02 3.16 15 27 H 0.16 3.58 8.06 -2.91 -0.02 3.55 15 28 H 0.12 4.77 8.06 -2.91 -0.02 4.74 15 Total: -1.00 -63.02 244.53 0.39 -62.63 By element: Atomic # 1 Polarization: 41.03 SS G_CDS: -0.24 Total: 40.79 kcal Atomic # 6 Polarization: -23.02 SS G_CDS: 2.32 Total: -20.69 kcal Atomic # 7 Polarization: -90.93 SS G_CDS: -2.10 Total: -93.02 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.62 Total: -32.97 kcal Atomic # 14 Polarization: 41.25 SS G_CDS: 2.03 Total: 43.28 kcal Total: -63.02 0.39 -62.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149279606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.402 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds