Wall clock time and date at job start Mon Mar 30 2020 02:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46910 * 109.70496 * 300.00059 * 9 7 2 11 11 C 1.53467 * 109.70620 * 179.42209 * 9 7 2 12 12 O 1.43170 * 108.23749 * 180.61532 * 11 9 7 13 13 C 1.36109 * 116.72674 * 46.17538 * 12 11 9 14 14 C 1.38706 * 119.38684 * 162.84964 * 13 12 11 15 15 C 1.38199 * 120.06226 * 179.86485 * 14 13 12 16 16 C 1.38252 * 120.11211 * 359.96485 * 15 14 13 17 17 C 1.38201 * 120.11590 * 0.05555 * 16 15 14 18 18 C 1.38703 * 120.06330 * 0.03305 * 17 16 15 19 19 O 1.36107 * 119.39680 * 179.80062 * 18 17 16 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.00896 * 110.99495 * 60.00292 * 10 9 7 22 22 H 1.00894 * 110.99566 * 183.95551 * 10 9 7 23 23 H 1.09002 * 109.70911 * 300.24281 * 11 9 7 24 24 H 1.09002 * 109.71070 * 60.87677 * 11 9 7 25 25 H 1.07996 * 119.97152 * 359.83886 * 14 13 12 26 26 H 1.07994 * 119.94643 * 179.97438 * 15 14 13 27 27 H 1.07997 * 119.94319 * 180.02562 * 16 15 14 28 28 H 1.08003 * 119.96816 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 0.4049 -2.5826 1.1975 11 6 2.2434 -3.6697 -0.0158 12 8 1.4959 -4.8907 -0.0300 13 6 0.4576 -4.9625 -0.9070 14 6 -0.0741 -6.2017 -1.2323 15 6 -1.1303 -6.2906 -2.1191 16 6 -1.6603 -5.1453 -2.6837 17 6 -1.1349 -3.9076 -2.3641 18 6 -0.0737 -3.8115 -1.4762 19 8 0.4358 -2.5860 -1.1743 20 1 -0.4850 0.8401 0.0004 21 1 -0.2623 -1.8261 1.2223 22 1 -0.0598 -3.4766 1.2503 23 1 2.8673 -3.6112 -0.9077 24 1 2.8703 -3.6319 0.8752 25 1 0.3380 -7.0978 -0.7926 26 1 -1.5425 -7.2564 -2.3714 27 1 -2.4860 -5.2180 -3.3760 28 1 -1.5511 -3.0144 -2.8062 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149279820.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:59 Heat of formation + Delta-G solvation = -48.012933 kcal Electronic energy + Delta-G solvation = -15297.336166 eV Core-core repulsion = 12699.786304 eV Total energy + Delta-G solvation = -2597.549863 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.34383 -37.10678 -36.19737 -33.43707 -31.22156 -30.00175 -28.87799 -27.16644 -25.29228 -22.61164 -22.01801 -19.33412 -17.99494 -17.04277 -16.24606 -15.59184 -15.23874 -14.39441 -14.32872 -13.78777 -13.58408 -13.43020 -13.06849 -12.75320 -12.26789 -11.71094 -11.39176 -11.03555 -10.97842 -10.84717 -10.51043 -10.31121 -9.78534 -9.14261 -8.82805 -8.06041 -7.91415 -7.15276 -6.33288 -4.48848 1.86907 1.99156 3.19396 3.24236 3.26323 3.92152 4.19046 4.30987 4.49744 5.12211 5.19928 5.43118 5.59967 5.81951 5.85037 5.92607 5.98908 6.26868 6.42423 6.52283 6.68648 6.92142 6.97564 7.22588 7.49498 7.59649 7.94436 8.18991 8.63321 8.66993 8.96056 9.26669 10.74387 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.047244 B = 0.009599 C = 0.008618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.529188 B = 2916.404321 C = 3248.383227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.284 1.284 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.077 0.923 9 C 0.357 3.643 10 N -0.823 5.823 11 C 0.044 3.956 12 O -0.320 6.320 13 C 0.035 3.965 14 C -0.121 4.121 15 C -0.145 4.145 16 C -0.122 4.122 17 C -0.137 4.137 18 C 0.076 3.924 19 O -0.313 6.313 20 H 0.269 0.731 21 H 0.367 0.633 22 H 0.303 0.697 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.123 0.877 26 H 0.119 0.881 27 H 0.119 0.881 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.205 -6.946 -2.560 7.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.121 4.121 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.551 4.551 8 H 0.095 0.905 9 C 0.232 3.768 10 N -0.366 5.366 11 C -0.032 4.032 12 O -0.235 6.235 13 C -0.011 4.011 14 C -0.140 4.140 15 C -0.164 4.164 16 C -0.140 4.140 17 C -0.156 4.156 18 C 0.028 3.972 19 O -0.223 6.223 20 H 0.079 0.921 21 H 0.187 0.813 22 H 0.115 0.885 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.137 0.863 27 H 0.137 0.863 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -0.632 -6.647 -2.154 7.016 hybrid contribution -0.327 0.815 -0.635 1.084 sum -0.959 -5.832 -2.789 6.535 Atomic orbital electron populations 1.69748 1.06244 1.27765 1.46065 1.25092 0.94997 0.99882 0.92118 0.86382 0.79528 0.81540 0.78966 1.20919 1.19656 1.19859 1.20531 0.92654 0.87730 1.54158 0.90539 1.20766 0.86221 0.93881 0.75937 1.59710 1.30553 1.07073 1.39281 1.23720 0.94053 0.82397 1.03059 1.86166 1.41677 1.39363 1.56299 1.19056 0.92066 0.93623 0.96318 1.20301 0.98779 0.94808 1.00088 1.20634 0.98089 0.98146 0.99506 1.20772 1.00425 0.91918 1.00932 1.20513 0.96050 0.98161 1.00839 1.19455 0.94213 0.86668 0.96846 1.87097 1.63965 1.23469 1.47807 0.92052 0.81335 0.88546 0.91941 0.86796 0.85949 0.86282 0.86334 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.48 11.10 55.43 0.62 -22.87 15 2 C 0.09 2.30 5.31 -17.82 -0.09 2.20 15 3 Si 0.91 20.26 29.54 -169.99 -5.02 15.24 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 7 C -0.51 -13.67 8.47 -34.44 -0.29 -13.96 15 8 H 0.08 1.95 7.75 -52.49 -0.41 1.54 15 9 C 0.36 8.99 0.88 -68.62 -0.06 8.93 15 10 N -0.82 -20.27 9.07 -3.74 -0.03 -20.30 15 11 C 0.04 0.96 6.18 37.40 0.23 1.19 15 12 O -0.32 -6.90 9.87 -32.87 -0.32 -7.23 15 13 C 0.03 0.73 5.94 -39.14 -0.23 0.50 15 14 C -0.12 -2.13 9.96 -39.42 -0.39 -2.52 15 15 C -0.15 -2.27 10.04 -39.59 -0.40 -2.67 15 16 C -0.12 -1.99 10.04 -39.59 -0.40 -2.39 15 17 C -0.14 -2.70 9.96 -39.42 -0.39 -3.10 15 18 C 0.08 1.73 6.20 -39.14 -0.24 1.49 15 19 O -0.31 -8.17 9.40 -32.87 -0.31 -8.48 15 20 H 0.27 6.96 8.31 -40.82 -0.34 6.62 15 21 H 0.37 9.60 6.99 -39.29 -0.27 9.32 15 22 H 0.30 7.10 7.60 -39.29 -0.30 6.80 15 23 H 0.06 1.34 8.14 -51.93 -0.42 0.91 15 24 H 0.11 2.34 8.14 -51.93 -0.42 1.91 15 25 H 0.12 1.88 8.06 -52.49 -0.42 1.46 15 26 H 0.12 1.45 8.06 -52.49 -0.42 1.03 15 27 H 0.12 1.55 8.06 -52.49 -0.42 1.13 15 28 H 0.13 2.42 8.06 -52.48 -0.42 2.00 15 LS Contribution 242.45 15.07 3.65 3.65 Total: -1.00 -28.31 242.45 -6.34 -34.65 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -2.65 Total: 15.65 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.27 Total: -10.32 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.58 Total: -43.17 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.63 Total: -15.71 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.31 -6.34 -34.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149279820.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.364 kcal (2) G-P(sol) polarization free energy of solvation -28.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds