Wall clock time and date at job start Mon Mar 30 2020 03:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36504 * 119.84878 * 2 1 4 4 C 1.41273 * 119.68812 * 180.26622 * 3 2 1 5 5 C 1.40348 * 120.28616 * 179.74637 * 4 3 2 6 6 H 1.08004 * 119.99792 * 205.15589 * 5 4 3 7 7 C 1.46543 * 120.00085 * 25.16251 * 5 4 3 8 8 N 1.29499 * 120.00196 * 12.37003 * 7 5 4 9 9 Si 1.86807 * 119.99778 * 192.37330 * 7 5 4 10 10 H 1.48501 * 109.47029 * 59.99492 * 9 7 5 11 11 H 1.48494 * 109.47004 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.46992 * 299.99840 * 9 7 5 13 13 C 1.41273 * 119.42127 * 359.72249 * 4 3 2 14 14 C 1.36498 * 119.68980 * 0.02562 * 13 4 3 15 15 C 1.50702 * 119.84821 * 180.02562 * 14 13 4 16 16 C 1.38794 * 120.30228 * 359.97438 * 14 13 4 17 17 N 1.48015 * 119.70397 * 180.02562 * 16 14 13 18 18 O 1.31694 * 119.99939 * 89.99281 * 17 16 14 19 19 O 1.31696 * 119.99684 * 269.72505 * 17 16 14 20 20 H 1.09004 * 109.47481 * 270.28011 * 1 2 3 21 21 H 1.09000 * 109.47435 * 30.28414 * 1 2 3 22 22 H 1.08999 * 109.47121 * 150.27928 * 1 2 3 23 23 H 1.08003 * 120.15165 * 359.97438 * 3 2 1 24 24 H 0.96995 * 119.99889 * 180.02562 * 8 7 5 25 25 H 1.08000 * 120.15189 * 180.02562 * 13 4 3 26 26 H 1.09002 * 109.47262 * 269.97758 * 15 14 13 27 27 H 1.08996 * 109.47035 * 29.98292 * 15 14 13 28 28 H 1.09003 * 109.46671 * 149.97565 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.1840 0.0000 4 6 3.5991 1.1800 -0.0057 5 6 4.3103 2.3899 -0.0111 6 1 5.3122 2.4256 -0.4129 7 6 3.6935 3.6048 0.5284 8 7 2.6028 3.5242 1.2218 9 14 4.4807 5.2699 0.2159 10 1 4.5463 5.5197 -1.2465 11 1 3.6680 6.3309 0.8629 12 1 5.8535 5.2825 0.7822 13 6 4.2897 -0.0525 -0.0054 14 6 3.5857 -1.2219 -0.0001 15 6 4.3186 -2.5386 0.0009 16 6 2.1979 -1.2038 0.0055 17 7 1.4477 -2.4798 0.0117 18 8 1.1188 -3.0446 1.1550 19 8 1.1047 -3.0475 -1.1260 20 1 -0.3634 0.0050 1.0277 21 1 -0.3634 0.8874 -0.5182 22 1 -0.3633 -0.8925 -0.5095 23 1 1.6464 2.1193 -0.0004 24 1 2.1944 4.3284 1.5785 25 1 5.3695 -0.0693 -0.0093 26 1 4.4917 -2.8589 -1.0266 27 1 5.2748 -2.4218 0.5110 28 1 3.7195 -3.2875 0.5190 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000197199045.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:46 Heat of formation + Delta-G solvation = 18.522772 kcal Electronic energy + Delta-G solvation = -14649.222755 eV Core-core repulsion = 12054.558097 eV Total energy + Delta-G solvation = -2594.664658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.03496 -37.21438 -34.34107 -33.46457 -32.94975 -31.25929 -27.68971 -26.69307 -25.70922 -23.72676 -20.69084 -19.99267 -17.67233 -17.31726 -17.13226 -15.89056 -15.28694 -13.94139 -13.61880 -13.34472 -13.18613 -12.75448 -12.56762 -12.27580 -12.06837 -11.74925 -11.56171 -11.31799 -11.07633 -10.69219 -10.55681 -10.50602 -10.06157 -9.91393 -9.87769 -9.69255 -8.08441 -7.77978 -7.38524 -4.92756 0.72794 2.11291 2.37970 2.56314 2.74610 2.76662 2.79876 3.47848 3.94905 5.02721 5.39333 5.53279 5.73427 5.86433 5.99244 6.11324 6.16634 6.30015 6.34170 6.37280 6.47011 6.68172 6.82070 7.05041 7.31733 7.46962 7.50965 7.59287 7.60862 8.01116 8.23520 8.42213 9.46905 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.043585 B = 0.008285 C = 0.007350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.261961 B = 3378.604551 C = 3808.598732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.018 4.018 3 C -0.172 4.172 4 C 0.120 3.880 5 C -0.427 4.427 6 H 0.093 0.907 7 C 0.069 3.931 8 N -0.740 5.740 9 Si 0.928 3.072 10 H -0.255 1.255 11 H -0.272 1.272 12 H -0.257 1.257 13 C -0.227 4.227 14 C -0.002 4.002 15 C -0.120 4.120 16 C -0.161 4.161 17 N 0.008 4.992 18 O -0.188 6.188 19 O -0.188 6.188 20 H 0.068 0.932 21 H 0.070 0.930 22 H 0.050 0.950 23 H 0.137 0.863 24 H 0.298 0.702 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.528 2.023 -1.015 2.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.020 4.020 3 C -0.191 4.191 4 C 0.117 3.883 5 C -0.452 4.452 6 H 0.111 0.889 7 C -0.160 4.160 8 N -0.359 5.359 9 Si 0.750 3.250 10 H -0.179 1.179 11 H -0.197 1.197 12 H -0.181 1.181 13 C -0.247 4.247 14 C -0.004 4.004 15 C -0.177 4.177 16 C -0.243 4.243 17 N 0.500 4.500 18 O -0.391 6.391 19 O -0.392 6.392 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.069 0.931 23 H 0.154 0.846 24 H 0.110 0.890 25 H 0.130 0.870 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.720 2.802 -0.862 3.399 hybrid contribution -0.031 0.273 0.048 0.279 sum 1.690 3.075 -0.814 3.602 Atomic orbital electron populations 1.20814 0.92536 1.02013 1.01992 1.18742 0.94549 0.90554 0.98153 1.20987 0.94206 0.95290 1.08666 1.17728 0.91962 0.92259 0.86344 1.21021 1.01226 0.91073 1.31892 0.88860 1.27676 0.93876 1.02600 0.91811 1.69079 1.14989 1.33458 1.18419 0.86030 0.80335 0.78076 0.80593 1.17948 1.19656 1.18106 1.20530 0.98055 0.90604 1.15463 1.18588 0.89090 0.95801 0.96888 1.20862 1.00392 0.94464 1.02015 1.19216 0.89891 0.78158 1.37018 1.50714 0.95871 1.02647 1.00746 1.96163 1.59490 1.67693 1.15762 1.96156 1.58997 1.67467 1.16535 0.91358 0.91150 0.93065 0.84577 0.88963 0.86982 0.91269 0.91041 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.75 36.01 0.35 -2.02 15 2 C -0.02 -0.43 5.84 -105.04 -0.61 -1.04 15 3 C -0.17 -4.14 8.36 -39.05 -0.33 -4.46 15 4 C 0.12 2.90 5.62 -106.80 -0.60 2.30 15 5 C -0.43 -9.77 9.32 -35.44 -0.33 -10.10 15 6 H 0.09 1.99 7.96 -52.48 -0.42 1.57 15 7 C 0.07 1.46 5.41 -15.19 -0.08 1.38 15 8 N -0.74 -16.20 10.84 55.99 0.61 -15.59 15 9 Si 0.93 15.53 29.66 -169.99 -5.04 10.48 15 10 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 11 H -0.27 -4.42 7.11 56.52 0.40 -4.02 15 12 H -0.26 -4.27 7.11 56.52 0.40 -3.87 15 13 C -0.23 -5.17 9.40 -39.06 -0.37 -5.53 15 14 C 0.00 -0.05 5.84 -105.04 -0.61 -0.66 15 15 C -0.12 -2.30 9.75 36.01 0.35 -1.95 15 16 C -0.16 -3.89 6.23 -79.54 -0.50 -4.39 15 17 N 0.01 0.19 2.70 34.16 0.09 0.29 15 18 O -0.19 -4.50 19.90 -31.56 -0.63 -5.13 15 19 O -0.19 -4.47 19.88 -31.57 -0.63 -5.09 15 20 H 0.07 1.33 8.14 -51.93 -0.42 0.90 15 21 H 0.07 1.27 8.08 -51.93 -0.42 0.85 15 22 H 0.05 1.04 7.33 -51.93 -0.38 0.66 15 23 H 0.14 3.25 6.04 -52.48 -0.32 2.94 15 24 H 0.30 5.76 8.27 -40.82 -0.34 5.42 15 25 H 0.11 2.30 8.06 -52.49 -0.42 1.88 15 26 H 0.07 1.22 8.14 -51.93 -0.42 0.80 15 27 H 0.07 1.18 8.08 -51.93 -0.42 0.76 15 28 H 0.05 1.06 7.35 -51.93 -0.38 0.68 15 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -25.74 257.27 -7.19 -32.93 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: -2.74 Total: 4.72 kcal Atomic # 6 Polarization: -23.75 SS G_CDS: -2.73 Total: -26.47 kcal Atomic # 7 Polarization: -16.01 SS G_CDS: 0.70 Total: -15.31 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -1.26 Total: -10.23 kcal Atomic # 14 Polarization: 15.53 SS G_CDS: -5.04 Total: 10.48 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.74 -7.19 -32.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000197199045.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.451 kcal (2) G-P(sol) polarization free energy of solvation -25.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds