Wall clock time and date at job start Mon Mar 30 2020 02:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99495 * 2 1 4 4 H 1.48501 * 109.46783 * 270.26845 * 3 2 1 5 5 H 1.48495 * 109.47676 * 30.27094 * 3 2 1 6 6 H 1.48503 * 109.47002 * 150.27596 * 3 2 1 7 7 C 1.38685 * 120.00138 * 180.26757 * 2 1 3 8 8 H 1.07999 * 119.99927 * 179.72985 * 7 2 1 9 9 O 1.34844 * 119.99822 * 359.72710 * 7 2 1 10 10 C 1.35427 * 116.99822 * 179.97438 * 9 7 2 11 11 N 1.32925 * 120.67675 * 359.72339 * 10 9 7 12 12 C 1.32661 * 121.06356 * 179.71458 * 11 10 9 13 13 N 1.38591 * 118.83965 * 180.26985 * 12 11 10 14 14 N 1.32178 * 122.32551 * 0.58079 * 12 11 10 15 15 C 1.33617 * 120.47703 * 359.71355 * 14 12 11 16 16 N 1.34636 * 134.44417 * 180.02562 * 15 14 12 17 17 C 1.30411 * 109.81539 * 180.02562 * 16 15 14 18 18 N 1.35207 * 110.13169 * 359.97438 * 17 16 15 19 19 H 0.97004 * 126.41267 * 180.02562 * 18 17 16 20 20 C 1.38019 * 107.16201 * 0.02562 * 18 17 16 21 21 H 0.97000 * 120.00437 * 359.73351 * 1 2 3 22 22 H 0.97001 * 120.00498 * 180.29411 * 13 12 11 23 23 H 0.97008 * 119.99610 * 0.30223 * 13 12 11 24 24 H 1.07995 * 124.93625 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4908 2.0497 -1.4001 5 1 1.4494 2.6511 0.7057 6 1 3.5496 1.4387 0.6942 7 6 2.0087 -1.2010 -0.0056 8 1 3.0887 -1.2010 -0.0100 9 8 1.3345 -2.3688 -0.0055 10 6 2.0721 -3.5045 -0.0117 11 7 3.4002 -3.4506 -0.0231 12 6 4.1303 -4.5582 -0.0235 13 7 5.5118 -4.4483 -0.0299 14 7 3.5867 -5.7631 -0.0242 15 6 2.2583 -5.9072 -0.0186 16 7 1.4248 -6.9645 -0.0172 17 6 0.1876 -6.5521 -0.0114 18 7 0.1476 -5.2006 -0.0082 19 1 -0.6497 -4.6482 -0.0035 20 6 1.4537 -4.7545 -0.0129 21 1 -0.4851 0.8400 0.0039 22 1 6.0620 -5.2472 -0.0347 23 1 5.9286 -3.5723 -0.0295 24 1 -0.6791 -7.1964 -0.0087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000201208921.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:12 Heat of formation + Delta-G solvation = 78.207494 kcal Electronic energy + Delta-G solvation = -14395.667897 eV Core-core repulsion = 11732.343771 eV Total energy + Delta-G solvation = -2663.324127 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.065 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.72301 -38.85529 -37.45126 -33.34328 -32.92081 -32.05683 -30.90688 -28.29203 -25.59057 -23.20718 -22.39287 -20.95821 -19.08189 -18.25000 -17.26354 -16.83179 -15.40063 -15.20594 -15.15705 -14.62329 -14.14997 -13.71527 -13.70011 -13.02677 -12.81521 -11.86723 -11.19283 -10.90051 -10.55119 -10.31954 -10.22287 -9.59354 -9.57014 -8.86112 -8.36885 -8.12214 -7.21106 -6.68300 -4.23454 1.66261 2.26608 3.04750 3.06161 3.12673 3.37185 3.39904 3.76906 3.83615 4.50264 4.71051 4.76017 5.04358 5.27821 5.43677 5.81512 6.19637 6.53557 6.82292 7.23281 7.72603 7.73938 7.77372 7.97114 8.23079 8.34108 8.79443 9.25541 9.44630 10.48074 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.033183 B = 0.009613 C = 0.007473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.602873 B = 2911.982438 C = 3745.741607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.037 3.963 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.368 4.368 8 H 0.113 0.887 9 O -0.155 6.155 10 C 0.406 3.594 11 N -0.618 5.618 12 C 0.607 3.393 13 N -0.830 5.830 14 N -0.606 5.606 15 C 0.341 3.659 16 N -0.508 5.508 17 C 0.263 3.737 18 N -0.559 5.559 19 H 0.427 0.573 20 C -0.139 4.139 21 H 0.274 0.726 22 H 0.407 0.593 23 H 0.409 0.591 24 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 -4.756 0.016 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.168 4.168 3 Si 0.776 3.224 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.446 4.446 8 H 0.131 0.869 9 O -0.043 6.043 10 C 0.211 3.789 11 N -0.367 5.367 12 C 0.245 3.755 13 N -0.381 5.381 14 N -0.345 5.345 15 C 0.094 3.906 16 N -0.234 5.234 17 C -0.025 4.025 18 N -0.169 5.169 19 H 0.266 0.734 20 C -0.256 4.256 21 H 0.084 0.916 22 H 0.237 0.763 23 H 0.239 0.761 24 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 2.157 -5.252 0.008 5.678 hybrid contribution -0.850 1.879 0.003 2.062 sum 1.307 -3.374 0.011 3.618 Atomic orbital electron populations 1.70013 1.06187 1.28392 1.44868 1.25493 0.95991 0.99312 0.96042 0.85521 0.79054 0.78902 0.78911 1.19679 1.20241 1.18728 1.21645 0.93282 0.79086 1.50591 0.86911 1.84082 1.33416 1.11983 1.74862 1.18756 0.86047 0.84912 0.89213 1.67633 1.04466 1.30481 1.34120 1.18585 0.86716 0.83214 0.87032 1.41483 1.01025 1.11364 1.84179 1.66874 1.09338 1.24034 1.34267 1.18719 0.88681 0.86791 0.96397 1.69908 0.98789 1.29056 1.25695 1.25170 0.96918 0.81786 0.98647 1.42629 1.07246 1.07864 1.59154 0.73435 1.19381 0.86633 0.95911 1.23635 0.91635 0.76279 0.76050 0.76660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.74 13.67 55.48 0.76 -22.98 14 2 C 0.04 0.98 5.49 -17.52 -0.10 0.88 14 3 Si 0.95 19.97 29.55 -169.99 -5.02 14.94 14 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 14 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 14 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 14 7 C -0.37 -10.11 9.65 30.90 0.30 -9.81 14 8 H 0.11 3.02 6.75 -52.49 -0.35 2.67 14 9 O -0.16 -4.27 9.76 1.00 0.01 -4.26 14 10 C 0.41 10.16 7.50 -16.62 -0.12 10.04 14 11 N -0.62 -14.79 8.84 -13.94 -0.12 -14.91 14 12 C 0.61 13.07 8.65 -322.73 -2.79 10.28 14 13 N -0.83 -13.23 9.08 29.77 0.27 -12.96 14 14 N -0.61 -13.69 10.51 -13.68 -0.14 -13.83 14 15 C 0.34 7.71 8.42 -157.51 -1.33 6.39 14 16 N -0.51 -10.05 11.23 -13.87 -0.16 -10.20 14 17 C 0.26 3.96 12.95 -90.30 -1.17 2.79 14 18 N -0.56 -9.67 6.21 -11.74 -0.07 -9.74 14 19 H 0.43 6.33 8.96 -40.82 -0.37 5.97 14 20 C -0.14 -3.12 7.33 -83.74 -0.61 -3.74 14 21 H 0.27 6.93 8.31 -40.82 -0.34 6.59 14 22 H 0.41 5.41 8.94 -40.82 -0.36 5.05 14 23 H 0.41 5.72 8.94 -40.82 -0.36 5.36 14 24 H 0.22 1.86 8.06 -52.49 -0.42 1.44 14 LS Contribution 230.11 15.07 3.47 3.47 Total: -1.00 -34.10 230.11 -7.84 -41.94 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -1.01 Total: 11.69 kcal Atomic # 6 Polarization: 22.66 SS G_CDS: -5.82 Total: 16.84 kcal Atomic # 7 Polarization: -85.16 SS G_CDS: 0.53 Total: -84.62 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: 0.01 Total: -4.26 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -34.10 -7.84 -41.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000201208921.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.148 kcal (2) G-P(sol) polarization free energy of solvation -34.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds