Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 H 1.09005 * 109.61035 * 60.33367 * 9 7 2 11 11 C 1.53583 * 109.61129 * 180.84970 * 9 7 2 12 12 S 1.81708 * 107.79945 * 185.55787 * 11 9 7 13 13 C 1.76408 * 102.55384 * 312.90785 * 12 11 9 14 14 C 1.39026 * 118.85588 * 195.87884 * 13 12 11 15 15 C 1.38105 * 120.29604 * 180.67880 * 14 13 12 16 16 C 1.38277 * 119.90390 * 0.02562 * 15 14 13 17 17 C 1.38027 * 120.17293 * 359.81770 * 16 15 14 18 18 C 1.39094 * 121.19361 * 16.23139 * 13 12 11 19 19 N 1.39592 * 122.85062 * 359.02970 * 18 13 12 20 20 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 21 21 H 1.09000 * 109.79774 * 305.12701 * 11 9 7 22 22 H 1.08999 * 109.79670 * 65.97982 * 11 9 7 23 23 H 1.07992 * 119.85431 * 0.70382 * 14 13 12 24 24 H 1.07996 * 120.04900 * 180.02562 * 15 14 13 25 25 H 1.08005 * 119.91416 * 179.81099 * 16 15 14 26 26 H 1.08000 * 119.76874 * 180.02562 * 17 16 15 27 27 H 0.97001 * 118.58585 * 198.31893 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 1 3.8770 -0.6905 0.8898 11 6 4.0268 -2.6407 -0.0335 12 16 5.8353 -2.5895 0.1358 13 6 6.2939 -1.3426 -1.0248 14 6 7.6235 -1.2506 -1.4204 15 6 8.0179 -0.2767 -2.3167 16 6 7.0871 0.6117 -2.8232 17 6 5.7645 0.5253 -2.4382 18 6 5.3537 -0.4552 -1.5380 19 7 4.0020 -0.5007 -1.1924 20 1 -0.4850 0.8401 0.0040 21 1 3.5945 -3.2030 0.7941 22 1 3.7578 -3.1099 -0.9799 23 1 8.3511 -1.9440 -1.0254 24 1 9.0517 -0.2091 -2.6217 25 1 7.3959 1.3753 -3.5218 26 1 5.0429 1.2223 -2.8381 27 1 3.3610 -0.0519 -1.7658 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213143276.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = 32.841016 kcal Electronic energy + Delta-G solvation = -12754.704270 eV Core-core repulsion = 10603.413368 eV Total energy + Delta-G solvation = -2151.290901 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.91194 -36.04864 -32.66840 -30.85704 -30.35614 -27.81803 -25.72809 -22.47126 -21.83071 -20.27207 -17.43492 -17.06676 -16.35455 -15.50736 -14.72201 -14.31574 -13.80244 -13.48782 -13.29031 -12.94915 -12.57498 -12.12096 -11.96411 -11.41728 -11.19242 -10.96481 -10.53500 -10.13429 -10.04944 -9.46710 -9.20676 -8.99111 -8.82323 -7.26658 -6.43925 -6.43146 -4.53784 1.71337 2.02534 2.27005 3.03909 3.12249 3.23651 3.31452 4.15459 4.19991 4.24171 5.03674 5.29277 5.37744 5.69787 5.72587 5.82827 5.88847 6.04074 6.26298 6.37703 6.61661 6.73477 6.82803 6.96101 7.11288 7.31046 8.01306 8.15902 8.51902 8.61599 9.14221 10.66608 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.033036 B = 0.011959 C = 0.009320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.364836 B = 2340.859958 C = 3003.485831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.082 3.918 3 Si 0.855 3.145 4 H -0.276 1.276 5 H -0.227 1.227 6 H -0.287 1.287 7 C -0.528 4.528 8 H 0.086 0.914 9 C 0.240 3.760 10 H 0.043 0.957 11 C -0.087 4.087 12 S -0.173 6.173 13 C -0.155 4.155 14 C -0.055 4.055 15 C -0.184 4.184 16 C -0.078 4.078 17 C -0.195 4.195 18 C 0.224 3.776 19 N -0.728 5.728 20 H 0.271 0.729 21 H 0.110 0.890 22 H 0.084 0.916 23 H 0.118 0.882 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.152 0.085 -3.384 11.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.125 4.125 3 Si 0.680 3.320 4 H -0.202 1.202 5 H -0.150 1.150 6 H -0.213 1.213 7 C -0.568 4.568 8 H 0.104 0.896 9 C 0.137 3.863 10 H 0.061 0.939 11 C -0.236 4.236 12 S 0.068 5.932 13 C -0.272 4.272 14 C -0.079 4.079 15 C -0.206 4.206 16 C -0.099 4.099 17 C -0.220 4.220 18 C 0.112 3.888 19 N -0.357 5.357 20 H 0.080 0.920 21 H 0.128 0.872 22 H 0.103 0.897 23 H 0.136 0.864 24 H 0.133 0.867 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 11.520 -0.694 -2.377 11.784 hybrid contribution -0.805 1.837 -1.011 2.246 sum 10.716 1.143 -3.388 11.297 Atomic orbital electron populations 1.69889 1.06473 1.27875 1.46964 1.25086 0.94845 0.99545 0.93003 0.87413 0.82072 0.82650 0.79859 1.20172 1.15019 1.21312 1.20998 0.87214 0.95406 1.53193 0.89622 1.19247 0.95515 0.86697 0.84843 0.93939 1.24080 0.90549 1.03092 1.05865 1.84911 1.10143 1.47103 1.51013 1.20844 0.96567 1.01453 1.08373 1.20556 0.93229 0.97892 0.96234 1.20624 0.99036 0.98854 1.02073 1.20768 0.92681 0.98049 0.98416 1.20787 0.96666 1.00190 1.04317 1.17865 0.86163 0.91526 0.93286 1.46900 1.02370 1.57853 1.28568 0.91950 0.87215 0.89727 0.86420 0.86694 0.86776 0.86654 0.76819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.96 55.43 0.77 -24.01 15 2 C 0.08 2.17 5.40 -17.82 -0.10 2.07 15 3 Si 0.85 19.48 26.24 -169.99 -4.46 15.02 15 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 5 H -0.23 -4.88 4.95 56.52 0.28 -4.60 15 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.53 -13.56 9.21 -34.44 -0.32 -13.87 15 8 H 0.09 2.37 7.99 -52.49 -0.42 1.95 15 9 C 0.24 5.37 2.13 -69.05 -0.15 5.23 15 10 H 0.04 1.01 7.60 -51.93 -0.39 0.61 15 11 C -0.09 -1.72 5.92 37.46 0.22 -1.50 15 12 S -0.17 -3.24 22.12 -107.50 -2.38 -5.62 15 13 C -0.16 -2.96 6.07 -38.97 -0.24 -3.20 15 14 C -0.06 -0.91 9.71 -39.34 -0.38 -1.29 15 15 C -0.18 -2.73 10.05 -39.62 -0.40 -3.12 15 16 C -0.08 -1.19 10.03 -39.64 -0.40 -1.58 15 17 C -0.19 -3.43 9.77 -39.26 -0.38 -3.81 15 18 C 0.22 4.45 6.50 -83.61 -0.54 3.91 15 19 N -0.73 -15.48 3.16 -53.18 -0.17 -15.65 15 20 H 0.27 7.18 8.31 -40.82 -0.34 6.85 15 21 H 0.11 2.05 8.14 -51.93 -0.42 1.63 15 22 H 0.08 1.69 8.14 -51.93 -0.42 1.26 15 23 H 0.12 1.72 8.06 -52.49 -0.42 1.29 15 24 H 0.12 1.37 8.06 -52.49 -0.42 0.95 15 25 H 0.11 1.39 8.06 -52.48 -0.42 0.97 15 26 H 0.12 1.90 8.06 -52.49 -0.42 1.48 15 27 H 0.39 8.41 6.28 -40.82 -0.26 8.16 15 LS Contribution 238.12 15.07 3.59 3.59 Total: -1.00 -27.40 238.12 -8.19 -35.59 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.86 Total: 8.25 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -2.68 Total: -17.18 kcal Atomic # 7 Polarization: -40.26 SS G_CDS: 0.61 Total: -39.66 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.46 Total: 15.02 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.38 Total: -5.62 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -27.40 -8.19 -35.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213143276.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.434 kcal (2) G-P(sol) polarization free energy of solvation -27.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds