Wall clock time and date at job start Mon Mar 30 2020 02:36:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86796 * 120.00040 * 2 1 4 4 H 1.48504 * 109.47159 * 269.99981 * 3 2 1 5 5 H 1.48495 * 109.47407 * 29.99892 * 3 2 1 6 6 H 1.48496 * 109.47089 * 150.00194 * 3 2 1 7 7 C 1.39901 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00194 * 197.83036 * 7 2 1 9 9 C 1.41145 * 119.99670 * 17.83071 * 7 2 1 10 10 C 1.41014 * 120.32658 * 24.29873 * 9 7 2 11 11 C 1.35943 * 119.75643 * 179.97438 * 10 9 7 12 12 C 1.39548 * 121.08160 * 359.97438 * 11 10 9 13 13 C 1.40233 * 119.29456 * 359.97438 * 12 11 10 14 14 F 1.35098 * 119.79406 * 179.97438 * 13 12 11 15 15 C 1.36357 * 120.40921 * 0.02562 * 13 12 11 16 16 N 1.38987 * 110.14978 * 179.97438 * 12 11 10 17 17 C 1.34313 * 112.43257 * 0.02562 * 16 12 11 18 18 O 1.21284 * 126.40060 * 179.97438 * 17 16 12 19 19 C 1.51193 * 132.68080 * 179.97438 * 11 10 9 20 20 H 0.96994 * 119.99473 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.11849 * 0.24301 * 10 9 7 22 22 H 1.08002 * 119.95136 * 179.97438 * 15 13 12 23 23 H 0.97001 * 123.78099 * 179.97438 * 16 12 11 24 24 H 1.09003 * 110.52944 * 298.62374 * 19 11 10 25 25 H 1.09004 * 110.53099 * 61.37164 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5403 1.4401 0.7000 7 6 2.0083 -1.2116 0.0005 8 1 3.0494 -1.2339 0.2869 9 6 1.3534 -2.4047 -0.3732 10 6 0.2182 -2.3621 -1.2087 11 6 -0.4033 -3.5184 -1.5619 12 6 0.0635 -4.7539 -1.1114 13 6 1.1928 -4.7996 -0.2813 14 9 1.6530 -5.9902 0.1611 15 6 1.8286 -3.6496 0.0829 16 7 -0.7364 -5.7773 -1.6062 17 6 -1.7355 -5.3193 -2.3781 18 8 -2.5787 -5.9889 -2.9364 19 6 -1.6124 -3.8111 -2.4213 20 1 -0.4849 0.8400 -0.0004 21 1 -0.1535 -1.4147 -1.5701 22 1 2.6975 -3.6933 0.7228 23 1 -0.5890 -6.7170 -1.4159 24 1 -2.5025 -3.3430 -2.0008 25 1 -1.4467 -3.4699 -3.4432 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214586598.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:24 Heat of formation + Delta-G solvation = -79.069176 kcal Electronic energy + Delta-G solvation = -14264.533632 eV Core-core repulsion = 11542.176764 eV Total energy + Delta-G solvation = -2722.356867 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.68115 -41.94006 -39.10362 -36.99548 -34.89899 -32.71920 -30.67578 -28.84141 -26.94326 -23.14791 -22.34005 -21.91518 -19.41697 -18.96082 -17.59743 -17.01715 -16.89785 -16.82523 -16.29849 -16.17091 -15.30403 -14.78677 -14.19522 -13.87419 -13.80088 -13.57705 -13.00788 -12.82223 -12.71687 -12.57036 -11.95066 -11.74320 -11.57344 -11.08700 -10.83731 -9.42873 -8.91610 -8.70709 -6.36080 0.50200 0.78306 1.39676 1.47259 1.58828 1.68016 2.22020 2.26297 2.60211 3.38635 3.49294 3.57788 3.79451 4.36363 4.49495 4.59386 4.83649 4.94708 5.16711 5.24744 5.48757 5.56458 5.90504 5.92341 6.01145 6.18532 6.50279 6.79564 6.81349 7.12452 8.23179 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.037528 B = 0.008813 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.935007 B = 3176.292898 C = 3840.637574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.041 3.959 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.259 1.259 7 C -0.471 4.471 8 H 0.088 0.912 9 C 0.100 3.900 10 C -0.143 4.143 11 C -0.085 4.085 12 C -0.057 4.057 13 C 0.116 3.884 14 F -0.160 7.160 15 C -0.257 4.257 16 N -0.633 5.633 17 C 0.522 3.478 18 O -0.565 6.565 19 C -0.102 4.102 20 H 0.296 0.704 21 H 0.125 0.875 22 H 0.120 0.880 23 H 0.409 0.591 24 H 0.130 0.870 25 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.008 0.834 -1.431 1.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.177 4.177 3 Si 0.805 3.195 4 H -0.185 1.185 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.106 0.894 9 C 0.097 3.903 10 C -0.163 4.163 11 C -0.087 4.087 12 C -0.153 4.153 13 C 0.095 3.905 14 F -0.139 7.139 15 C -0.278 4.278 16 N -0.275 5.275 17 C 0.311 3.689 18 O -0.447 6.447 19 C -0.141 4.141 20 H 0.107 0.893 21 H 0.142 0.858 22 H 0.138 0.862 23 H 0.246 0.754 24 H 0.148 0.852 25 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 0.320 0.683 -1.723 1.881 hybrid contribution 0.549 -0.221 0.478 0.761 sum 0.870 0.461 -1.245 1.587 Atomic orbital electron populations 1.69836 1.08940 1.31459 1.32706 1.26761 0.95496 1.04513 0.90969 0.85135 0.79042 0.75589 0.79685 1.18474 1.19389 1.18253 1.19854 0.98781 0.91685 1.39586 0.89438 1.17635 0.91425 0.92119 0.89166 1.20299 0.98869 0.96204 1.00885 1.19415 0.97458 0.91959 0.99916 1.17585 0.98933 0.88864 1.09890 1.16680 0.94363 0.80528 0.98942 1.91354 1.88701 1.45348 1.88487 1.20587 1.06122 0.91162 1.09903 1.43017 1.27951 1.09043 1.47480 1.20702 0.79442 0.91617 0.77096 1.90706 1.38471 1.66266 1.49216 1.21007 0.98129 0.92210 1.02739 0.89320 0.85763 0.86175 0.75364 0.85201 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -36.46 10.95 21.82 0.24 -36.22 15 2 C 0.04 1.78 5.14 85.24 0.44 2.22 15 3 Si 0.98 33.18 29.59 68.60 2.03 35.21 15 4 H -0.26 -8.54 7.11 99.48 0.71 -7.83 15 5 H -0.27 -8.73 7.11 99.48 0.71 -8.02 15 6 H -0.26 -8.60 7.11 99.48 0.71 -7.89 15 7 C -0.47 -22.19 9.05 23.39 0.21 -21.98 15 8 H 0.09 3.95 7.91 -2.91 -0.02 3.92 15 9 C 0.10 4.79 5.58 -21.25 -0.12 4.67 15 10 C -0.14 -6.53 8.63 22.42 0.19 -6.33 15 11 C -0.08 -3.52 6.29 -19.93 -0.13 -3.64 15 12 C -0.06 -2.37 7.11 38.81 0.28 -2.09 15 13 C 0.12 5.04 7.28 22.32 0.16 5.21 15 14 F -0.16 -6.50 17.26 44.97 0.78 -5.72 15 15 C -0.26 -11.69 9.69 22.47 0.22 -11.47 15 16 N -0.63 -23.38 5.84 -302.55 -1.77 -25.15 15 17 C 0.52 19.44 8.70 87.95 0.77 20.21 15 18 O -0.57 -23.38 18.03 -3.04 -0.05 -23.44 15 19 C -0.10 -3.47 6.88 29.48 0.20 -3.27 15 20 H 0.30 11.98 8.30 -92.71 -0.77 11.22 15 21 H 0.12 5.77 6.17 -2.91 -0.02 5.75 15 22 H 0.12 5.16 8.06 -2.91 -0.02 5.13 15 23 H 0.41 13.46 8.96 -92.71 -0.83 12.63 15 24 H 0.13 4.00 8.14 -2.39 -0.02 3.98 15 25 H 0.14 3.94 8.14 -2.39 -0.02 3.93 15 Total: -1.00 -52.84 233.02 3.86 -48.98 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 0.42 Total: 22.82 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 2.22 Total: -16.48 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: -1.53 Total: -61.37 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.78 Total: -5.72 kcal Atomic # 14 Polarization: 33.18 SS G_CDS: 2.03 Total: 35.21 kcal Total: -52.84 3.86 -48.98 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214586598.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.091 kcal (2) G-P(sol) polarization free energy of solvation -52.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds