Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86803 * 119.99873 * 2 1 4 4 H 1.48501 * 109.46979 * 239.99699 * 3 2 1 5 5 H 1.48499 * 109.47059 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47485 * 119.99818 * 3 2 1 7 7 C 1.39942 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00717 * 197.21132 * 7 2 1 9 9 C 1.41416 * 120.00137 * 17.21150 * 7 2 1 10 10 C 1.40807 * 121.07060 * 23.26126 * 9 7 2 11 11 N 1.30580 * 119.90369 * 180.79775 * 10 9 7 12 12 C 1.34026 * 123.88683 * 359.72482 * 11 10 9 13 13 C 1.37349 * 119.55150 * 359.17717 * 12 11 10 14 14 C 1.39316 * 119.34036 * 1.33005 * 13 12 11 15 15 C 1.50787 * 125.81432 * 182.42058 * 13 12 11 16 16 S 1.81331 * 110.43990 * 340.76699 * 15 13 12 17 17 C 1.82064 * 100.84459 * 45.78995 * 16 15 13 18 18 C 1.50357 * 114.02914 * 179.06948 * 12 11 10 19 19 H 0.97005 * 119.99702 * 0.02562 * 1 2 3 20 20 H 1.07991 * 120.05107 * 0.77823 * 10 9 7 21 21 H 1.07998 * 120.27690 * 179.25020 * 14 13 12 22 22 H 1.09001 * 109.31746 * 101.00971 * 15 13 12 23 23 H 1.09001 * 109.31453 * 220.62659 * 15 13 12 24 24 H 1.09006 * 109.79039 * 176.37099 * 17 16 15 25 25 H 1.08998 * 109.79689 * 55.58196 * 17 16 15 26 26 H 1.09003 * 108.66111 * 37.55425 * 18 12 11 27 27 H 1.08993 * 108.56489 * 279.58412 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7465 -0.0006 6 1 3.0959 1.6966 1.2125 7 6 2.0080 -1.2119 0.0005 8 1 3.0517 -1.2328 0.2773 9 6 1.3485 -2.4094 -0.3613 10 6 0.1935 -2.3882 -1.1664 11 7 -0.4063 -3.5065 -1.4739 12 6 0.0123 -4.7143 -1.0711 13 6 1.1453 -4.8166 -0.3014 14 6 1.8246 -3.6587 0.0706 15 6 1.7690 -6.1007 0.1842 16 16 0.5651 -7.4549 0.1161 17 6 -0.1484 -7.1960 -1.5387 18 6 -0.8570 -5.8499 -1.5354 19 1 -0.4850 0.8401 -0.0004 20 1 -0.1959 -1.4484 -1.5289 21 1 2.7102 -3.7207 0.6856 22 1 2.6236 -6.3472 -0.4458 23 1 2.1050 -5.9716 1.2131 24 1 -0.8630 -7.9887 -1.7607 25 1 0.6446 -7.1940 -2.2865 26 1 -1.2013 -5.6345 -2.5470 27 1 -1.7244 -5.9139 -0.8787 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214610328.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = -3.844176 kcal Electronic energy + Delta-G solvation = -12522.007334 eV Core-core repulsion = 10369.125644 eV Total energy + Delta-G solvation = -2152.881691 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 221.057 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.53409 -36.44851 -34.61492 -34.02717 -31.58518 -28.12657 -27.52797 -24.29596 -23.26554 -21.97697 -19.20834 -17.75100 -17.20066 -16.61466 -16.34261 -15.65253 -15.26621 -14.94598 -14.57288 -14.11600 -13.86459 -13.37999 -13.28126 -12.99245 -12.92191 -12.77828 -12.41661 -12.05606 -11.78500 -11.20767 -10.92109 -10.10603 -9.88061 -9.35460 -8.80551 -8.65092 -6.48576 0.65156 0.84509 0.94186 1.38253 1.49071 1.51975 1.53563 2.16428 2.63785 3.55284 3.74382 3.83184 4.04349 4.28599 4.32846 4.42923 4.55809 4.71985 4.76894 4.92332 5.00621 5.11694 5.20715 5.27946 5.57830 5.87089 6.08936 6.33275 6.69095 6.73359 7.71803 8.20319 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.062482 B = 0.007404 C = 0.006823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.024567 B = 3780.790137 C = 4102.638873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.479 4.479 8 H 0.086 0.914 9 C 0.034 3.966 10 C 0.044 3.956 11 N -0.503 5.503 12 C -0.025 4.025 13 C -0.098 4.098 14 C -0.223 4.223 15 C -0.022 4.022 16 S -0.281 6.281 17 C -0.060 4.060 18 C -0.039 4.039 19 H 0.295 0.705 20 H 0.139 0.861 21 H 0.116 0.884 22 H 0.104 0.896 23 H 0.111 0.889 24 H 0.137 0.863 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.269 -6.312 -1.532 6.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.181 4.181 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.508 4.508 8 H 0.104 0.896 9 C 0.029 3.971 10 C -0.124 4.124 11 N -0.211 5.211 12 C -0.155 4.155 13 C -0.101 4.101 14 C -0.250 4.250 15 C -0.170 4.170 16 S -0.054 6.054 17 C -0.208 4.208 18 C -0.078 4.078 19 H 0.106 0.894 20 H 0.156 0.844 21 H 0.134 0.866 22 H 0.122 0.878 23 H 0.130 0.870 24 H 0.155 0.845 25 H 0.110 0.890 26 H 0.099 0.901 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.071 -7.041 -1.234 7.229 hybrid contribution 1.200 1.936 -0.149 2.283 sum 2.271 -5.105 -1.383 5.756 Atomic orbital electron populations 1.69805 1.09293 1.31515 1.33904 1.26912 0.95496 1.04975 0.90698 0.85103 0.78664 0.74832 0.80284 1.18208 1.19073 1.18096 1.19800 0.98416 0.91669 1.40899 0.89572 1.18826 0.93421 0.94123 0.90718 1.22799 0.96274 0.94630 0.98738 1.67044 1.32527 0.98960 1.22607 1.20607 0.97314 0.92782 1.04809 1.19970 0.96126 0.95039 0.98929 1.21589 1.04049 0.92039 1.07373 1.22146 0.98157 0.91289 1.05432 1.86578 1.51298 1.40661 1.26877 1.23291 1.03298 0.99914 0.94321 1.19851 0.96505 0.89742 1.01741 0.89401 0.84430 0.86627 0.87804 0.87040 0.84503 0.88979 0.90109 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.78 10.92 21.83 0.24 -41.54 15 2 C 0.04 1.72 5.19 85.26 0.44 2.16 15 3 Si 0.99 36.19 29.59 68.60 2.03 38.22 15 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 5 H -0.27 -9.22 7.11 99.48 0.71 -8.52 15 6 H -0.26 -9.03 7.11 99.48 0.71 -8.33 15 7 C -0.48 -24.83 9.11 23.47 0.21 -24.62 15 8 H 0.09 4.22 7.90 -2.91 -0.02 4.19 15 9 C 0.03 1.81 5.58 -21.32 -0.12 1.69 15 10 C 0.04 2.41 9.93 85.51 0.85 3.26 15 11 N -0.50 -26.09 9.96 -182.27 -1.82 -27.90 15 12 C -0.02 -1.13 6.61 41.91 0.28 -0.85 15 13 C -0.10 -4.27 5.77 -19.79 -0.11 -4.38 15 14 C -0.22 -10.78 9.33 23.08 0.22 -10.56 15 15 C -0.02 -0.74 6.14 71.26 0.44 -0.30 15 16 S -0.28 -8.72 22.35 -56.49 -1.26 -9.99 15 17 C -0.06 -1.65 6.56 71.69 0.47 -1.18 15 18 C -0.04 -1.38 5.53 29.45 0.16 -1.21 15 19 H 0.30 13.51 8.30 -92.70 -0.77 12.74 15 20 H 0.14 7.78 6.16 -2.92 -0.02 7.77 15 21 H 0.12 5.10 8.02 -2.91 -0.02 5.07 15 22 H 0.10 3.14 8.14 -2.39 -0.02 3.12 15 23 H 0.11 3.58 8.07 -2.40 -0.02 3.56 15 24 H 0.14 2.84 8.14 -2.38 -0.02 2.82 15 25 H 0.09 2.38 8.14 -2.39 -0.02 2.36 15 26 H 0.08 2.72 8.12 -2.39 -0.02 2.70 15 27 H 0.07 2.37 8.14 -2.39 -0.02 2.35 15 Total: -1.00 -59.04 243.03 3.20 -55.85 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 1.17 Total: 21.35 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 2.84 Total: -35.99 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.58 Total: -69.44 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -1.26 Total: -9.99 kcal Total: -59.04 3.20 -55.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214610328.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.003 kcal (2) G-P(sol) polarization free energy of solvation -59.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds