Wall clock time and date at job start Mon Mar 30 2020 03:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46502 * 109.46930 * 150.75538 * 3 2 1 5 5 C 1.36884 * 119.99863 * 263.70033 * 4 3 2 6 6 H 1.08003 * 119.99444 * 203.99743 * 5 4 3 7 7 C 1.38830 * 120.00027 * 24.00103 * 5 4 3 8 8 N 1.31561 * 119.99677 * 16.02626 * 7 5 4 9 9 Si 1.86796 * 119.99860 * 196.03247 * 7 5 4 10 10 H 1.48497 * 109.47284 * 59.99797 * 9 7 5 11 11 H 1.48501 * 109.47069 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47052 * 299.99934 * 9 7 5 13 13 C 1.38980 * 119.99996 * 83.70509 * 4 3 2 14 14 C 1.39684 * 120.86524 * 179.97438 * 13 4 3 15 15 C 1.37797 * 119.11718 * 180.02562 * 14 13 4 16 16 N 1.32059 * 120.88738 * 359.97438 * 15 14 13 17 17 C 1.32158 * 121.90744 * 359.70903 * 16 15 14 18 18 F 1.35092 * 119.61157 * 180.31466 * 17 16 15 19 19 C 1.38256 * 120.78128 * 0.58385 * 17 16 15 20 20 H 1.09002 * 109.47622 * 30.75576 * 3 2 1 21 21 H 1.09002 * 109.47459 * 270.75424 * 3 2 1 22 22 H 0.97006 * 119.99114 * 179.97438 * 8 7 5 23 23 H 1.08004 * 120.43713 * 359.97438 * 14 13 4 24 24 H 1.07996 * 119.55806 * 179.97438 * 15 14 13 25 25 H 1.07997 * 120.48073 * 179.70810 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.2061 -0.6748 5 6 3.4465 1.1558 -1.9970 6 1 4.1435 1.8765 -2.3985 7 6 2.9063 0.1784 -2.8218 8 7 1.8412 -0.4915 -2.4375 9 14 3.6918 -0.1856 -4.4770 10 1 5.0958 -0.6242 -4.2729 11 1 2.9313 -1.2631 -5.1595 12 1 3.6731 1.0408 -5.3142 13 6 3.2024 2.4006 0.0275 14 6 3.6657 3.5606 -0.5978 15 6 3.7576 4.7252 0.1330 16 7 3.4141 4.7546 1.4078 17 6 2.9654 3.6814 2.0352 18 9 2.6212 3.7655 3.3388 19 6 2.8493 2.4724 1.3747 20 1 2.9718 -0.8823 -0.5255 21 1 2.9714 -0.0127 1.0276 22 1 1.4636 -1.1742 -3.0140 23 1 3.9489 3.5446 -1.6399 24 1 4.1153 5.6261 -0.3432 25 1 2.4864 1.5974 1.8934 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227639005.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:09 Heat of formation + Delta-G solvation = 19.585214 kcal Electronic energy + Delta-G solvation = -14328.578216 eV Core-core repulsion = 11642.792075 eV Total energy + Delta-G solvation = -2685.786141 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.81698 -40.87574 -38.56006 -36.59634 -34.29191 -31.73945 -31.53165 -29.22672 -26.42068 -24.08004 -22.96781 -19.88399 -19.31616 -18.14410 -17.64466 -17.05921 -16.80143 -16.46798 -15.85574 -15.55391 -15.05153 -14.45772 -14.29000 -14.15765 -13.73659 -13.47145 -13.22378 -13.01689 -12.82886 -12.32073 -12.24866 -11.97256 -11.74293 -10.74008 -10.35734 -9.77182 -9.02802 -8.42263 -5.92712 0.34803 0.67550 1.50961 1.54230 1.60085 1.86945 2.22843 2.33259 2.84123 2.90142 3.09041 3.15589 3.56649 3.97180 4.27553 4.40060 4.52362 4.68860 4.83896 5.04848 5.11421 5.34261 5.43153 5.80837 6.07895 6.55134 6.99364 7.13099 7.17920 7.45645 8.59103 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.033108 B = 0.009987 C = 0.008056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.515354 B = 2802.927220 C = 3475.028811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C 0.259 3.741 3 C 0.230 3.770 4 N -0.437 5.437 5 C -0.331 4.331 6 H 0.115 0.885 7 C -0.002 4.002 8 N -0.898 5.898 9 Si 0.995 3.005 10 H -0.259 1.259 11 H -0.293 1.293 12 H -0.271 1.271 13 C 0.237 3.763 14 C -0.265 4.265 15 C 0.163 3.837 16 N -0.608 5.608 17 C 0.323 3.677 18 F -0.130 7.130 19 C -0.308 4.308 20 H 0.125 0.875 21 H 0.124 0.876 22 H 0.273 0.727 23 H 0.143 0.857 24 H 0.188 0.812 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.830 1.397 1.116 7.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.059 4.059 3 C 0.103 3.897 4 N -0.126 5.126 5 C -0.458 4.458 6 H 0.132 0.868 7 C -0.205 4.205 8 N -0.534 5.534 9 Si 0.819 3.181 10 H -0.184 1.184 11 H -0.219 1.219 12 H -0.196 1.196 13 C 0.114 3.886 14 C -0.292 4.292 15 C 0.011 3.989 16 N -0.330 5.330 17 C 0.172 3.828 18 F -0.109 7.109 19 C -0.337 4.337 20 H 0.143 0.857 21 H 0.142 0.858 22 H 0.083 0.917 23 H 0.161 0.839 24 H 0.205 0.795 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 5.066 1.726 1.379 5.526 hybrid contribution 0.074 -1.169 -1.057 1.578 sum 5.139 0.557 0.322 5.179 Atomic orbital electron populations 1.80878 1.14980 1.09843 1.13573 1.29786 0.95878 0.91381 0.88854 1.18942 0.80102 0.91119 0.99535 1.42577 1.56978 1.03869 1.09165 1.19954 1.24665 1.17327 0.83858 0.86776 1.26118 0.94644 0.96900 1.02845 1.69932 1.19097 1.24439 1.39945 0.84918 0.78461 0.77793 0.76884 1.18359 1.21877 1.19569 1.18184 0.92841 0.86937 0.90614 1.21682 1.12342 0.92518 1.02656 1.22458 0.91896 0.97812 0.86720 1.66991 1.22385 1.30387 1.13254 1.17836 0.95383 0.90616 0.78984 1.91509 1.89399 1.96909 1.33087 1.20951 1.18446 0.98851 0.95477 0.85717 0.85828 0.91704 0.83900 0.79493 0.84415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -24.70 18.54 20.00 0.37 -24.33 15 2 C 0.26 11.30 13.15 89.44 1.18 12.48 15 3 C 0.23 8.56 4.81 84.57 0.41 8.97 15 4 N -0.44 -17.92 2.69 -521.00 -1.40 -19.32 15 5 C -0.33 -14.12 9.02 84.05 0.76 -13.37 15 6 H 0.11 4.59 6.29 -2.91 -0.02 4.57 15 7 C 0.00 -0.11 4.95 84.88 0.42 0.32 15 8 N -0.90 -42.27 9.40 21.65 0.20 -42.07 15 9 Si 1.00 35.30 29.58 68.60 2.03 37.33 15 10 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15 11 H -0.29 -10.81 7.11 99.48 0.71 -10.10 15 12 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15 13 C 0.24 9.31 6.49 38.65 0.25 9.57 15 14 C -0.27 -9.53 9.33 22.51 0.21 -9.32 15 15 C 0.16 5.38 11.17 84.55 0.94 6.32 15 16 N -0.61 -23.01 10.37 -197.24 -2.05 -25.06 15 17 C 0.32 12.49 8.40 84.65 0.71 13.20 15 18 F -0.13 -4.84 17.29 44.97 0.78 -4.06 15 19 C -0.31 -11.64 9.14 22.57 0.21 -11.43 15 20 H 0.13 4.67 6.72 -2.39 -0.02 4.66 15 21 H 0.12 3.62 6.62 -2.39 -0.02 3.61 15 22 H 0.27 12.74 8.31 -92.70 -0.77 11.96 15 23 H 0.14 4.84 6.32 -2.91 -0.02 4.83 15 24 H 0.19 4.56 8.06 -2.91 -0.02 4.54 15 25 H 0.14 4.78 6.32 -2.91 -0.02 4.76 15 Total: -1.00 -55.03 234.29 6.26 -48.77 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 1.24 Total: 12.01 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.08 Total: 16.73 kcal Atomic # 7 Polarization: -107.91 SS G_CDS: -2.87 Total: -110.78 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal Total: -55.03 6.26 -48.77 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227639005.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.357 kcal (2) G-P(sol) polarization free energy of solvation -55.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds