Wall clock time and date at job start Mon Mar 30 2020 03:14:09
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13597 * 1
3 3 C 1.47198 * 179.97438 * 2 1
4 4 N 1.46502 * 109.46930 * 150.75538 * 3 2 1
5 5 C 1.36884 * 119.99863 * 263.70033 * 4 3 2
6 6 H 1.08003 * 119.99444 * 203.99743 * 5 4 3
7 7 C 1.38830 * 120.00027 * 24.00103 * 5 4 3
8 8 N 1.31561 * 119.99677 * 16.02626 * 7 5 4
9 9 Si 1.86796 * 119.99860 * 196.03247 * 7 5 4
10 10 H 1.48497 * 109.47284 * 59.99797 * 9 7 5
11 11 H 1.48501 * 109.47069 * 179.97438 * 9 7 5
12 12 H 1.48503 * 109.47052 * 299.99934 * 9 7 5
13 13 C 1.38980 * 119.99996 * 83.70509 * 4 3 2
14 14 C 1.39684 * 120.86524 * 179.97438 * 13 4 3
15 15 C 1.37797 * 119.11718 * 180.02562 * 14 13 4
16 16 N 1.32059 * 120.88738 * 359.97438 * 15 14 13
17 17 C 1.32158 * 121.90744 * 359.70903 * 16 15 14
18 18 F 1.35092 * 119.61157 * 180.31466 * 17 16 15
19 19 C 1.38256 * 120.78128 * 0.58385 * 17 16 15
20 20 H 1.09002 * 109.47622 * 30.75576 * 3 2 1
21 21 H 1.09002 * 109.47459 * 270.75424 * 3 2 1
22 22 H 0.97006 * 119.99114 * 179.97438 * 8 7 5
23 23 H 1.08004 * 120.43713 * 359.97438 * 14 13 4
24 24 H 1.07996 * 119.55806 * 179.97438 * 15 14 13
25 25 H 1.07997 * 120.48073 * 179.70810 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.6080 0.0007 0.0000
4 7 3.0957 1.2061 -0.6748
5 6 3.4465 1.1558 -1.9970
6 1 4.1435 1.8765 -2.3985
7 6 2.9063 0.1784 -2.8218
8 7 1.8412 -0.4915 -2.4375
9 14 3.6918 -0.1856 -4.4770
10 1 5.0958 -0.6242 -4.2729
11 1 2.9313 -1.2631 -5.1595
12 1 3.6731 1.0408 -5.3142
13 6 3.2024 2.4006 0.0275
14 6 3.6657 3.5606 -0.5978
15 6 3.7576 4.7252 0.1330
16 7 3.4141 4.7546 1.4078
17 6 2.9654 3.6814 2.0352
18 9 2.6212 3.7655 3.3388
19 6 2.8493 2.4724 1.3747
20 1 2.9718 -0.8823 -0.5255
21 1 2.9714 -0.0127 1.0276
22 1 1.4636 -1.1742 -3.0140
23 1 3.9489 3.5446 -1.6399
24 1 4.1153 5.6261 -0.3432
25 1 2.4864 1.5974 1.8934
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000227639005.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:09
Heat of formation + Delta-G solvation = 19.585214 kcal
Electronic energy + Delta-G solvation = -14328.578216 eV
Core-core repulsion = 11642.792075 eV
Total energy + Delta-G solvation = -2685.786141 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 221.066 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-49.81698 -40.87574 -38.56006 -36.59634 -34.29191 -31.73945 -31.53165 -29.22672
-26.42068 -24.08004 -22.96781 -19.88399 -19.31616 -18.14410 -17.64466 -17.05921
-16.80143 -16.46798 -15.85574 -15.55391 -15.05153 -14.45772 -14.29000 -14.15765
-13.73659 -13.47145 -13.22378 -13.01689 -12.82886 -12.32073 -12.24866 -11.97256
-11.74293 -10.74008 -10.35734 -9.77182 -9.02802 -8.42263 -5.92712 0.34803
0.67550 1.50961 1.54230 1.60085 1.86945 2.22843 2.33259 2.84123
2.90142 3.09041 3.15589 3.56649 3.97180 4.27553 4.40060 4.52362
4.68860 4.83896 5.04848 5.11421 5.34261 5.43153 5.80837 6.07895
6.55134 6.99364 7.13099 7.17920 7.45645 8.59103
Molecular weight = 221.07amu
Principal moments of inertia in cm(-1)
A = 0.033108 B = 0.009987 C = 0.008056
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 845.515354 B = 2802.927220 C = 3475.028811
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.512 5.512
2 C 0.259 3.741
3 C 0.230 3.770
4 N -0.437 5.437
5 C -0.331 4.331
6 H 0.115 0.885
7 C -0.002 4.002
8 N -0.898 5.898
9 Si 0.995 3.005
10 H -0.259 1.259
11 H -0.293 1.293
12 H -0.271 1.271
13 C 0.237 3.763
14 C -0.265 4.265
15 C 0.163 3.837
16 N -0.608 5.608
17 C 0.323 3.677
18 F -0.130 7.130
19 C -0.308 4.308
20 H 0.125 0.875
21 H 0.124 0.876
22 H 0.273 0.727
23 H 0.143 0.857
24 H 0.188 0.812
25 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.830 1.397 1.116 7.060
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.193 5.193
2 C -0.059 4.059
3 C 0.103 3.897
4 N -0.126 5.126
5 C -0.458 4.458
6 H 0.132 0.868
7 C -0.205 4.205
8 N -0.534 5.534
9 Si 0.819 3.181
10 H -0.184 1.184
11 H -0.219 1.219
12 H -0.196 1.196
13 C 0.114 3.886
14 C -0.292 4.292
15 C 0.011 3.989
16 N -0.330 5.330
17 C 0.172 3.828
18 F -0.109 7.109
19 C -0.337 4.337
20 H 0.143 0.857
21 H 0.142 0.858
22 H 0.083 0.917
23 H 0.161 0.839
24 H 0.205 0.795
25 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges 5.066 1.726 1.379 5.526
hybrid contribution 0.074 -1.169 -1.057 1.578
sum 5.139 0.557 0.322 5.179
Atomic orbital electron populations
1.80878 1.14980 1.09843 1.13573 1.29786 0.95878 0.91381 0.88854
1.18942 0.80102 0.91119 0.99535 1.42577 1.56978 1.03869 1.09165
1.19954 1.24665 1.17327 0.83858 0.86776 1.26118 0.94644 0.96900
1.02845 1.69932 1.19097 1.24439 1.39945 0.84918 0.78461 0.77793
0.76884 1.18359 1.21877 1.19569 1.18184 0.92841 0.86937 0.90614
1.21682 1.12342 0.92518 1.02656 1.22458 0.91896 0.97812 0.86720
1.66991 1.22385 1.30387 1.13254 1.17836 0.95383 0.90616 0.78984
1.91509 1.89399 1.96909 1.33087 1.20951 1.18446 0.98851 0.95477
0.85717 0.85828 0.91704 0.83900 0.79493 0.84415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -24.70 18.54 20.00 0.37 -24.33 15
2 C 0.26 11.30 13.15 89.44 1.18 12.48 15
3 C 0.23 8.56 4.81 84.57 0.41 8.97 15
4 N -0.44 -17.92 2.69 -521.00 -1.40 -19.32 15
5 C -0.33 -14.12 9.02 84.05 0.76 -13.37 15
6 H 0.11 4.59 6.29 -2.91 -0.02 4.57 15
7 C 0.00 -0.11 4.95 84.88 0.42 0.32 15
8 N -0.90 -42.27 9.40 21.65 0.20 -42.07 15
9 Si 1.00 35.30 29.58 68.60 2.03 37.33 15
10 H -0.26 -8.69 7.11 99.48 0.71 -7.98 15
11 H -0.29 -10.81 7.11 99.48 0.71 -10.10 15
12 H -0.27 -9.53 7.11 99.48 0.71 -8.82 15
13 C 0.24 9.31 6.49 38.65 0.25 9.57 15
14 C -0.27 -9.53 9.33 22.51 0.21 -9.32 15
15 C 0.16 5.38 11.17 84.55 0.94 6.32 15
16 N -0.61 -23.01 10.37 -197.24 -2.05 -25.06 15
17 C 0.32 12.49 8.40 84.65 0.71 13.20 15
18 F -0.13 -4.84 17.29 44.97 0.78 -4.06 15
19 C -0.31 -11.64 9.14 22.57 0.21 -11.43 15
20 H 0.13 4.67 6.72 -2.39 -0.02 4.66 15
21 H 0.12 3.62 6.62 -2.39 -0.02 3.61 15
22 H 0.27 12.74 8.31 -92.70 -0.77 11.96 15
23 H 0.14 4.84 6.32 -2.91 -0.02 4.83 15
24 H 0.19 4.56 8.06 -2.91 -0.02 4.54 15
25 H 0.14 4.78 6.32 -2.91 -0.02 4.76 15
Total: -1.00 -55.03 234.29 6.26 -48.77
By element:
Atomic # 1 Polarization: 10.77 SS G_CDS: 1.24 Total: 12.01 kcal
Atomic # 6 Polarization: 11.65 SS G_CDS: 5.08 Total: 16.73 kcal
Atomic # 7 Polarization: -107.91 SS G_CDS: -2.87 Total: -110.78 kcal
Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal
Atomic # 14 Polarization: 35.30 SS G_CDS: 2.03 Total: 37.33 kcal
Total: -55.03 6.26 -48.77 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000227639005.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.357 kcal
(2) G-P(sol) polarization free energy of solvation -55.031 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.326 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.772 kcal
(6) G-S(sol) free energy of system = (1) + (5) 19.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds