Wall clock time and date at job start Mon Mar 30 2020 03:03:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30639 * 1
3 3 Si 1.86798 * 119.99823 * 2 1
4 4 H 1.48505 * 109.47096 * 265.00149 * 3 2 1
5 5 H 1.48508 * 109.47172 * 24.99698 * 3 2 1
6 6 H 1.48500 * 109.47173 * 145.00019 * 3 2 1
7 7 C 1.40122 * 119.99751 * 179.97438 * 2 1 3
8 8 H 1.08008 * 119.99532 * 185.03948 * 7 2 1
9 9 C 1.46168 * 120.00676 * 5.03671 * 7 2 1
10 10 O 1.21743 * 119.99427 * 354.96677 * 9 7 2
11 11 N 1.34766 * 120.00290 * 175.24115 * 9 7 2
12 12 C 1.39532 * 120.00351 * 183.68810 * 11 9 7
13 13 C 1.39048 * 120.08228 * 334.42426 * 12 11 9
14 14 C 1.38041 * 119.91925 * 179.97438 * 13 12 11
15 15 C 1.38353 * 120.08217 * 0.02562 * 14 13 12
16 16 C 1.38311 * 120.16791 * 0.02562 * 15 14 13
17 17 C 1.38087 * 120.08027 * 359.67954 * 16 15 14
18 18 C 1.50705 * 120.04233 * 180.32320 * 17 16 15
19 19 O 1.42902 * 109.46679 * 0.27495 * 18 17 16
20 20 H 0.96999 * 120.00190 * 0.02562 * 1 2 3
21 21 H 0.97009 * 120.00041 * 3.68508 * 11 9 7
22 22 H 1.08004 * 120.04102 * 359.97363 * 13 12 11
23 23 H 1.07999 * 119.95818 * 179.97438 * 14 13 12
24 24 H 1.07996 * 119.91432 * 179.97438 * 15 14 13
25 25 H 1.07992 * 119.96166 * 180.02562 * 16 15 14
26 26 H 1.08991 * 109.47097 * 120.27743 * 18 17 16
27 27 H 1.08998 * 109.46850 * 240.27654 * 18 17 16
28 28 H 0.96699 * 113.99234 * 180.02562 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3064 0.0000 0.0000
3 14 2.2403 1.6177 0.0000
4 1 2.5935 1.9855 -1.3948
5 1 1.3888 2.6809 0.5917
6 1 3.4811 1.4730 0.8030
7 6 2.0069 -1.2135 0.0005
8 1 3.0839 -1.2153 0.0827
9 6 1.2804 -2.4770 -0.1100
10 8 0.0630 -2.4811 -0.1103
11 7 1.9582 -3.6379 -0.2061
12 6 1.2671 -4.8362 -0.3890
13 6 -0.0496 -4.9542 0.0418
14 6 -0.7303 -6.1411 -0.1413
15 6 -0.1037 -7.2127 -0.7521
16 6 1.2063 -7.0996 -1.1811
17 6 1.8917 -5.9135 -1.0068
18 6 3.3167 -5.7889 -1.4811
19 8 3.7293 -7.0198 -2.0783
20 1 -0.4850 0.8400 -0.0004
21 1 2.9265 -3.6405 -0.1482
22 1 -0.5393 -4.1182 0.5191
23 1 -1.7529 -6.2335 0.1935
24 1 -0.6386 -8.1401 -0.8936
25 1 1.6920 -7.9380 -1.6578
26 1 3.3862 -4.9871 -2.2161
27 1 3.9631 -5.5616 -0.6334
28 1 4.6388 -7.0122 -2.4066
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000236507417.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:03:54
Heat of formation + Delta-G solvation = -63.561699 kcal
Electronic energy + Delta-G solvation = -14489.559494 eV
Core-core repulsion = 11891.335387 eV
Total energy + Delta-G solvation = -2598.224108 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 221.084 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-39.42678 -37.18116 -36.22056 -33.54429 -32.56849 -30.77207 -29.05722 -26.40400
-25.43478 -22.28450 -20.73436 -19.74015 -17.81737 -16.97418 -16.25744 -15.64397
-15.18001 -14.79021 -14.38743 -13.71317 -13.48788 -13.11787 -12.79985 -12.58540
-11.84698 -11.72549 -11.38351 -11.13642 -10.79170 -10.63831 -10.50342 -10.36359
-10.13900 -9.39159 -8.92570 -8.13546 -7.66093 -7.01830 -6.39178 -4.87133
1.97884 2.18568 3.04515 3.11085 3.13943 3.94885 4.26410 4.35506
4.55463 4.61679 5.30194 5.46786 5.56927 5.63558 5.71319 5.79366
6.03538 6.37464 6.45492 6.76568 6.99782 7.15709 7.23068 7.28009
7.52435 7.68172 7.74372 8.04672 8.13701 8.79991 9.15411 10.32239
10.50993
Molecular weight = 221.08amu
Principal moments of inertia in cm(-1)
A = 0.038882 B = 0.007746 C = 0.006553
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 719.963187 B = 3613.723998 C = 4271.511806
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.758 5.758
2 C 0.087 3.913
3 Si 0.914 3.086
4 H -0.270 1.270
5 H -0.278 1.278
6 H -0.264 1.264
7 C -0.539 4.539
8 H 0.072 0.928
9 C 0.543 3.457
10 O -0.556 6.556
11 N -0.695 5.695
12 C 0.197 3.803
13 C -0.147 4.147
14 C -0.102 4.102
15 C -0.176 4.176
16 C -0.078 4.078
17 C -0.162 4.162
18 C 0.128 3.872
19 O -0.569 6.569
20 H 0.273 0.727
21 H 0.391 0.609
22 H 0.161 0.839
23 H 0.114 0.886
24 H 0.110 0.890
25 H 0.122 0.878
26 H 0.056 0.944
27 H 0.050 0.950
28 H 0.376 0.624
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.997 -7.840 -1.573 9.996
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.386 5.386
2 C -0.135 4.135
3 Si 0.738 3.262
4 H -0.195 1.195
5 H -0.203 1.203
6 H -0.188 1.188
7 C -0.575 4.575
8 H 0.090 0.910
9 C 0.350 3.650
10 O -0.438 6.438
11 N -0.336 5.336
12 C 0.097 3.903
13 C -0.167 4.167
14 C -0.120 4.120
15 C -0.195 4.195
16 C -0.096 4.096
17 C -0.166 4.166
18 C 0.050 3.950
19 O -0.374 6.374
20 H 0.084 0.916
21 H 0.224 0.776
22 H 0.178 0.822
23 H 0.132 0.868
24 H 0.128 0.872
25 H 0.140 0.860
26 H 0.074 0.926
27 H 0.068 0.932
28 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges 4.353 -7.755 -1.396 9.003
hybrid contribution 1.510 0.966 -0.202 1.803
sum 5.863 -6.790 -1.599 9.112
Atomic orbital electron populations
1.69975 1.07193 1.27959 1.33426 1.25739 0.94700 1.00541 0.92470
0.86284 0.80026 0.80744 0.79169 1.19478 1.20290 1.18813 1.20835
0.94148 0.89120 1.53408 0.90969 1.18390 0.87430 0.82048 0.77166
1.90530 1.13710 1.85476 1.54133 1.44108 1.09533 1.05316 1.74671
1.17803 0.92943 0.85717 0.93865 1.21923 0.94212 0.98760 1.01842
1.21073 0.99263 0.93035 0.98666 1.20911 0.95514 0.98840 1.04247
1.20556 0.93848 0.96601 0.98630 1.19347 0.96037 0.95595 1.05608
1.20683 0.92700 0.85726 0.95868 1.86440 1.34340 1.36073 1.80576
0.91619 0.77606 0.82194 0.86807 0.87226 0.86002 0.92619 0.93169
0.77718
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.76 -21.69 11.84 55.55 0.66 -21.03 15
2 C 0.09 2.31 5.50 -17.35 -0.10 2.22 15
3 Si 0.91 19.18 29.56 -169.99 -5.03 14.15 15
4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15
5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15
6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15
7 C -0.54 -14.48 9.53 -35.69 -0.34 -14.82 15
8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 15
9 C 0.54 14.88 7.62 -13.08 -0.10 14.78 15
10 O -0.56 -17.05 11.94 5.15 0.06 -16.99 15
11 N -0.69 -15.63 5.14 -11.20 -0.06 -15.68 15
12 C 0.20 4.26 6.43 -83.77 -0.54 3.72 15
13 C -0.15 -3.28 8.79 -39.35 -0.35 -3.63 15
14 C -0.10 -1.92 10.04 -39.61 -0.40 -2.31 15
15 C -0.18 -3.02 10.04 -39.51 -0.40 -3.42 15
16 C -0.08 -1.38 9.37 -39.61 -0.37 -1.75 15
17 C -0.16 -3.04 5.90 -104.39 -0.62 -3.65 15
18 C 0.13 1.92 6.41 36.01 0.23 2.15 15
19 O -0.57 -7.57 12.14 -35.23 -0.43 -7.99 15
20 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15
21 H 0.39 7.47 7.67 -40.82 -0.31 7.16 15
22 H 0.16 4.08 5.52 -52.48 -0.29 3.79 15
23 H 0.11 1.86 8.06 -52.49 -0.42 1.44 15
24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15
25 H 0.12 1.98 7.00 -52.49 -0.37 1.61 15
26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15
27 H 0.05 0.67 7.86 -51.93 -0.41 0.26 15
28 H 0.38 2.98 9.12 45.56 0.42 3.40 15
LS Contribution 249.16 15.07 3.75 3.75
Total: -1.00 -32.86 249.16 -5.78 -38.65
By element:
Atomic # 1 Polarization: 13.63 SS G_CDS: -1.78 Total: 11.86 kcal
Atomic # 6 Polarization: -3.74 SS G_CDS: -2.97 Total: -6.72 kcal
Atomic # 7 Polarization: -37.31 SS G_CDS: 0.60 Total: -36.71 kcal
Atomic # 8 Polarization: -24.62 SS G_CDS: -0.37 Total: -24.98 kcal
Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal
Total LS contribution 3.75 Total: 3.75 kcal
Total: -32.86 -5.78 -38.65 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000236507417.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.917 kcal
(2) G-P(sol) polarization free energy of solvation -32.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.777 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal
(6) G-S(sol) free energy of system = (1) + (5) -63.562 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds