Wall clock time and date at job start Mon Mar 30 2020 03:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30639 * 1 3 3 Si 1.86798 * 119.99823 * 2 1 4 4 H 1.48505 * 109.47096 * 265.00149 * 3 2 1 5 5 H 1.48508 * 109.47172 * 24.99698 * 3 2 1 6 6 H 1.48500 * 109.47173 * 145.00019 * 3 2 1 7 7 C 1.40122 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99532 * 185.03948 * 7 2 1 9 9 C 1.46168 * 120.00676 * 5.03671 * 7 2 1 10 10 O 1.21743 * 119.99427 * 354.96677 * 9 7 2 11 11 N 1.34766 * 120.00290 * 175.24115 * 9 7 2 12 12 C 1.39532 * 120.00351 * 183.68810 * 11 9 7 13 13 C 1.39048 * 120.08228 * 334.42426 * 12 11 9 14 14 C 1.38041 * 119.91925 * 179.97438 * 13 12 11 15 15 C 1.38353 * 120.08217 * 0.02562 * 14 13 12 16 16 C 1.38311 * 120.16791 * 0.02562 * 15 14 13 17 17 C 1.38087 * 120.08027 * 359.67954 * 16 15 14 18 18 C 1.50705 * 120.04233 * 180.32320 * 17 16 15 19 19 O 1.42902 * 109.46679 * 0.27495 * 18 17 16 20 20 H 0.96999 * 120.00190 * 0.02562 * 1 2 3 21 21 H 0.97009 * 120.00041 * 3.68508 * 11 9 7 22 22 H 1.08004 * 120.04102 * 359.97363 * 13 12 11 23 23 H 1.07999 * 119.95818 * 179.97438 * 14 13 12 24 24 H 1.07996 * 119.91432 * 179.97438 * 15 14 13 25 25 H 1.07992 * 119.96166 * 180.02562 * 16 15 14 26 26 H 1.08991 * 109.47097 * 120.27743 * 18 17 16 27 27 H 1.08998 * 109.46850 * 240.27654 * 18 17 16 28 28 H 0.96699 * 113.99234 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.5935 1.9855 -1.3948 5 1 1.3888 2.6809 0.5917 6 1 3.4811 1.4730 0.8030 7 6 2.0069 -1.2135 0.0005 8 1 3.0839 -1.2153 0.0827 9 6 1.2804 -2.4770 -0.1100 10 8 0.0630 -2.4811 -0.1103 11 7 1.9582 -3.6379 -0.2061 12 6 1.2671 -4.8362 -0.3890 13 6 -0.0496 -4.9542 0.0418 14 6 -0.7303 -6.1411 -0.1413 15 6 -0.1037 -7.2127 -0.7521 16 6 1.2063 -7.0996 -1.1811 17 6 1.8917 -5.9135 -1.0068 18 6 3.3167 -5.7889 -1.4811 19 8 3.7293 -7.0198 -2.0783 20 1 -0.4850 0.8400 -0.0004 21 1 2.9265 -3.6405 -0.1482 22 1 -0.5393 -4.1182 0.5191 23 1 -1.7529 -6.2335 0.1935 24 1 -0.6386 -8.1401 -0.8936 25 1 1.6920 -7.9380 -1.6578 26 1 3.3862 -4.9871 -2.2161 27 1 3.9631 -5.5616 -0.6334 28 1 4.6388 -7.0122 -2.4066 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236507417.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:54 Heat of formation + Delta-G solvation = -63.561699 kcal Electronic energy + Delta-G solvation = -14489.559494 eV Core-core repulsion = 11891.335387 eV Total energy + Delta-G solvation = -2598.224108 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.42678 -37.18116 -36.22056 -33.54429 -32.56849 -30.77207 -29.05722 -26.40400 -25.43478 -22.28450 -20.73436 -19.74015 -17.81737 -16.97418 -16.25744 -15.64397 -15.18001 -14.79021 -14.38743 -13.71317 -13.48788 -13.11787 -12.79985 -12.58540 -11.84698 -11.72549 -11.38351 -11.13642 -10.79170 -10.63831 -10.50342 -10.36359 -10.13900 -9.39159 -8.92570 -8.13546 -7.66093 -7.01830 -6.39178 -4.87133 1.97884 2.18568 3.04515 3.11085 3.13943 3.94885 4.26410 4.35506 4.55463 4.61679 5.30194 5.46786 5.56927 5.63558 5.71319 5.79366 6.03538 6.37464 6.45492 6.76568 6.99782 7.15709 7.23068 7.28009 7.52435 7.68172 7.74372 8.04672 8.13701 8.79991 9.15411 10.32239 10.50993 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.038882 B = 0.007746 C = 0.006553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.963187 B = 3613.723998 C = 4271.511806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.087 3.913 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.543 3.457 10 O -0.556 6.556 11 N -0.695 5.695 12 C 0.197 3.803 13 C -0.147 4.147 14 C -0.102 4.102 15 C -0.176 4.176 16 C -0.078 4.078 17 C -0.162 4.162 18 C 0.128 3.872 19 O -0.569 6.569 20 H 0.273 0.727 21 H 0.391 0.609 22 H 0.161 0.839 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.122 0.878 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -7.840 -1.573 9.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.336 5.336 12 C 0.097 3.903 13 C -0.167 4.167 14 C -0.120 4.120 15 C -0.195 4.195 16 C -0.096 4.096 17 C -0.166 4.166 18 C 0.050 3.950 19 O -0.374 6.374 20 H 0.084 0.916 21 H 0.224 0.776 22 H 0.178 0.822 23 H 0.132 0.868 24 H 0.128 0.872 25 H 0.140 0.860 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.353 -7.755 -1.396 9.003 hybrid contribution 1.510 0.966 -0.202 1.803 sum 5.863 -6.790 -1.599 9.112 Atomic orbital electron populations 1.69975 1.07193 1.27959 1.33426 1.25739 0.94700 1.00541 0.92470 0.86284 0.80026 0.80744 0.79169 1.19478 1.20290 1.18813 1.20835 0.94148 0.89120 1.53408 0.90969 1.18390 0.87430 0.82048 0.77166 1.90530 1.13710 1.85476 1.54133 1.44108 1.09533 1.05316 1.74671 1.17803 0.92943 0.85717 0.93865 1.21923 0.94212 0.98760 1.01842 1.21073 0.99263 0.93035 0.98666 1.20911 0.95514 0.98840 1.04247 1.20556 0.93848 0.96601 0.98630 1.19347 0.96037 0.95595 1.05608 1.20683 0.92700 0.85726 0.95868 1.86440 1.34340 1.36073 1.80576 0.91619 0.77606 0.82194 0.86807 0.87226 0.86002 0.92619 0.93169 0.77718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.69 11.84 55.55 0.66 -21.03 15 2 C 0.09 2.31 5.50 -17.35 -0.10 2.22 15 3 Si 0.91 19.18 29.56 -169.99 -5.03 14.15 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 15 7 C -0.54 -14.48 9.53 -35.69 -0.34 -14.82 15 8 H 0.07 1.75 7.85 -52.48 -0.41 1.34 15 9 C 0.54 14.88 7.62 -13.08 -0.10 14.78 15 10 O -0.56 -17.05 11.94 5.15 0.06 -16.99 15 11 N -0.69 -15.63 5.14 -11.20 -0.06 -15.68 15 12 C 0.20 4.26 6.43 -83.77 -0.54 3.72 15 13 C -0.15 -3.28 8.79 -39.35 -0.35 -3.63 15 14 C -0.10 -1.92 10.04 -39.61 -0.40 -2.31 15 15 C -0.18 -3.02 10.04 -39.51 -0.40 -3.42 15 16 C -0.08 -1.38 9.37 -39.61 -0.37 -1.75 15 17 C -0.16 -3.04 5.90 -104.39 -0.62 -3.65 15 18 C 0.13 1.92 6.41 36.01 0.23 2.15 15 19 O -0.57 -7.57 12.14 -35.23 -0.43 -7.99 15 20 H 0.27 7.07 8.29 -40.82 -0.34 6.73 15 21 H 0.39 7.47 7.67 -40.82 -0.31 7.16 15 22 H 0.16 4.08 5.52 -52.48 -0.29 3.79 15 23 H 0.11 1.86 8.06 -52.49 -0.42 1.44 15 24 H 0.11 1.56 8.06 -52.49 -0.42 1.14 15 25 H 0.12 1.98 7.00 -52.49 -0.37 1.61 15 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 27 H 0.05 0.67 7.86 -51.93 -0.41 0.26 15 28 H 0.38 2.98 9.12 45.56 0.42 3.40 15 LS Contribution 249.16 15.07 3.75 3.75 Total: -1.00 -32.86 249.16 -5.78 -38.65 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -1.78 Total: 11.86 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -2.97 Total: -6.72 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.60 Total: -36.71 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.37 Total: -24.98 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.86 -5.78 -38.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236507417.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.917 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds