Wall clock time and date at job start Mon Mar 30 2020 02:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86810 * 119.99714 * 2 1 4 4 H 1.48498 * 109.46617 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47208 * 300.00275 * 3 2 1 6 6 H 1.48498 * 109.46950 * 60.00607 * 3 2 1 7 7 C 1.38742 * 120.00544 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00420 * 179.97438 * 7 2 1 9 9 S 1.76209 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.76195 * 99.99918 * 179.97438 * 9 7 2 11 11 N 1.31123 * 125.08800 * 0.02562 * 10 9 7 12 12 C 1.35521 * 109.58772 * 180.02562 * 11 10 9 13 13 C 1.39584 * 134.30718 * 180.02562 * 12 11 10 14 14 N 1.31673 * 120.26424 * 179.29611 * 13 12 11 15 15 C 1.32240 * 122.37158 * 0.59697 * 14 13 12 16 16 C 1.37905 * 121.26119 * 359.62220 * 15 14 13 17 17 C 1.38932 * 118.83595 * 359.97438 * 16 15 14 18 18 N 1.36863 * 125.08678 * 179.97438 * 10 9 7 19 19 H 0.97001 * 126.37205 * 359.95773 * 18 10 9 20 20 H 0.96998 * 120.00501 * 359.97438 * 1 2 3 21 21 H 1.07997 * 119.86525 * 359.96733 * 13 12 11 22 22 H 1.08005 * 119.36796 * 179.64144 * 15 14 13 23 23 H 1.08007 * 120.58368 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6179 0.0000 4 1 3.7097 1.3465 -0.0006 5 1 1.8909 2.3966 -1.2125 6 1 1.8910 2.3964 1.2126 7 6 2.0095 -1.2015 -0.0005 8 1 3.0895 -1.2014 -0.0010 9 16 1.1286 -2.7275 -0.0019 10 6 2.4783 -3.8600 -0.0029 11 7 3.7454 -3.5225 -0.0021 12 6 4.5131 -4.6393 -0.0039 13 6 5.8885 -4.8770 -0.0036 14 7 6.3488 -6.1107 0.0083 15 6 5.5499 -7.1645 0.0086 16 6 4.1781 -7.0226 0.0042 17 6 3.6368 -5.7431 -0.0001 18 7 2.3612 -5.2236 -0.0036 19 1 1.5338 -5.7299 -0.0031 20 1 -0.4851 0.8400 0.0004 21 1 6.5779 -4.0458 -0.0021 22 1 5.9799 -8.1552 0.0127 23 1 3.5359 -7.8909 0.0041 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238548294.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:06 Heat of formation + Delta-G solvation = 68.717693 kcal Electronic energy + Delta-G solvation = -11880.233754 eV Core-core repulsion = 9626.958239 eV Total energy + Delta-G solvation = -2253.275515 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 221.032 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.56574 -37.89067 -32.89103 -32.65710 -30.55671 -29.34846 -25.80774 -23.62847 -22.57822 -21.21931 -18.63435 -17.86283 -16.59254 -15.76354 -15.02109 -14.98239 -14.81044 -14.01900 -13.80098 -13.05435 -12.67277 -11.93489 -11.37505 -11.22535 -11.12699 -10.48771 -10.25570 -9.55583 -9.52419 -9.34789 -9.00476 -8.80923 -8.16281 -6.85992 -6.57662 -4.32187 1.12234 1.82969 2.35391 3.09458 3.18623 3.21889 3.28611 3.52080 3.94052 4.30907 4.71216 4.81003 4.87796 4.99447 5.26106 5.40989 5.56478 5.78563 6.05862 6.47329 6.75029 6.96575 7.48257 7.56059 8.21274 8.31395 8.46482 8.95327 10.50680 Molecular weight = 221.03amu Principal moments of inertia in cm(-1) A = 0.051849 B = 0.007559 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.899638 B = 3703.514559 C = 4233.564591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.075 3.925 3 Si 0.934 3.066 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.533 4.533 8 H 0.111 0.889 9 S 0.145 5.855 10 C 0.267 3.733 11 N -0.494 5.494 12 C 0.022 3.978 13 C 0.146 3.854 14 N -0.489 5.489 15 C 0.068 3.932 16 C -0.158 4.158 17 C 0.063 3.937 18 N -0.596 5.596 19 H 0.422 0.578 20 H 0.275 0.725 21 H 0.158 0.842 22 H 0.153 0.847 23 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 -9.427 -0.006 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.135 4.135 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.681 4.681 8 H 0.129 0.871 9 S 0.381 5.619 10 C -0.103 4.103 11 N -0.220 5.220 12 C -0.103 4.103 13 C -0.022 4.022 14 N -0.200 5.200 15 C -0.085 4.085 16 C -0.182 4.182 17 C -0.056 4.056 18 N -0.212 5.212 19 H 0.260 0.740 20 H 0.085 0.915 21 H 0.176 0.824 22 H 0.171 0.829 23 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.143 -8.755 0.001 9.302 hybrid contribution -0.055 0.148 -0.004 0.158 sum 3.088 -8.607 -0.003 9.144 Atomic orbital electron populations 1.69920 1.06166 1.28615 1.46397 1.25132 0.95215 0.99837 0.93295 0.85838 0.80151 0.80091 0.77986 1.18750 1.20302 1.20299 1.23331 0.97432 0.88672 1.58688 0.87137 1.83619 0.97469 0.96215 1.84577 1.27350 1.00053 0.84997 0.97944 1.71116 0.99164 1.25858 1.25881 1.20462 0.95601 0.89735 1.04507 1.21955 0.90070 0.94051 0.96083 1.67581 1.39518 0.98618 1.14257 1.22161 0.88869 0.97492 0.99995 1.20818 0.96459 0.93626 1.07346 1.19045 0.85957 0.95968 1.04673 1.42981 1.06560 1.06532 1.65091 0.73957 0.91502 0.82439 0.82943 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.73 13.22 55.49 0.73 -23.00 14 2 C 0.07 1.97 5.49 -17.48 -0.10 1.87 14 3 Si 0.93 20.61 29.55 -169.99 -5.02 15.59 14 4 H -0.26 -5.83 7.11 56.52 0.40 -5.43 14 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 6 H -0.28 -5.98 7.11 56.52 0.40 -5.58 14 7 C -0.53 -14.34 9.35 30.92 0.29 -14.05 14 8 H 0.11 3.07 6.85 -52.49 -0.36 2.71 14 9 S 0.14 3.43 21.89 -107.50 -2.35 1.07 14 10 C 0.27 5.84 8.19 -88.17 -0.72 5.12 14 11 N -0.49 -11.53 9.96 -10.83 -0.11 -11.64 14 12 C 0.02 0.45 7.27 -84.72 -0.62 -0.16 14 13 C 0.15 2.63 11.27 -17.12 -0.19 2.43 14 14 N -0.49 -8.15 10.33 -12.94 -0.13 -8.29 14 15 C 0.07 0.96 11.16 -17.50 -0.20 0.77 14 16 C -0.16 -2.28 10.13 -39.45 -0.40 -2.68 14 17 C 0.06 1.14 7.36 -83.94 -0.62 0.52 14 18 N -0.60 -10.57 6.26 -10.51 -0.07 -10.63 14 19 H 0.42 5.84 8.96 -40.82 -0.37 5.47 14 20 H 0.28 6.93 8.31 -40.82 -0.34 6.59 14 21 H 0.16 2.53 8.06 -52.49 -0.42 2.11 14 22 H 0.15 1.61 8.06 -52.48 -0.42 1.18 14 23 H 0.13 1.38 8.06 -52.48 -0.42 0.95 14 LS Contribution 231.06 15.07 3.48 3.48 Total: -1.00 -30.01 231.06 -7.15 -37.16 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -1.13 Total: 2.42 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.55 Total: -6.17 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.43 Total: -53.55 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -2.35 Total: 1.07 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -30.01 -7.15 -37.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238548294.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.879 kcal (2) G-P(sol) polarization free energy of solvation -30.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds