Wall clock time and date at job start Mon Mar 30 2020 02:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31355 * 1 3 3 Si 1.86797 * 120.00037 * 2 1 4 4 H 1.48504 * 109.47261 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47273 * 300.00076 * 3 2 1 6 6 H 1.48508 * 109.47091 * 59.99847 * 3 2 1 7 7 C 1.39049 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00096 * 186.96371 * 7 2 1 9 9 N 1.36874 * 120.00112 * 6.96089 * 7 2 1 10 10 C 1.46739 * 125.61690 * 354.32467 * 9 7 2 11 11 C 1.50828 * 106.22832 * 179.97438 * 10 9 7 12 12 C 1.39755 * 106.41944 * 0.02562 * 11 10 9 13 13 C 1.39657 * 119.37520 * 179.75796 * 12 11 10 14 14 C 1.37973 * 119.87142 * 0.50885 * 13 12 11 15 15 C 1.38315 * 120.35809 * 359.46709 * 14 13 12 16 16 C 1.37736 * 133.26857 * 180.02562 * 11 10 9 17 17 F 1.35101 * 120.04713 * 359.96917 * 16 11 10 18 18 C 1.34409 * 125.62169 * 174.32020 * 9 7 2 19 19 O 1.21592 * 124.84322 * 0.02803 * 18 9 7 20 20 H 0.96998 * 120.00430 * 0.02562 * 1 2 3 21 21 H 1.08994 * 110.10310 * 299.18841 * 10 9 7 22 22 H 1.09003 * 110.10276 * 60.74987 * 10 9 7 23 23 H 1.08000 * 120.06062 * 180.28164 * 13 12 11 24 24 H 1.07990 * 119.81743 * 179.75185 * 14 13 12 25 25 H 1.08009 * 119.91186 * 180.27160 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3135 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7076 1.3464 0.0006 5 1 1.8888 2.3964 -1.2124 6 1 1.8887 2.3965 1.2125 7 6 2.0088 -1.2042 0.0005 8 1 3.0828 -1.2076 0.1139 9 7 1.3320 -2.3853 -0.1426 10 6 -0.1271 -2.5341 -0.1870 11 6 -0.3955 -4.0088 -0.3553 12 6 0.8532 -4.6349 -0.4000 13 6 0.9190 -6.0222 -0.5469 14 6 -0.2433 -6.7575 -0.6566 15 6 -1.4748 -6.1294 -0.6110 16 6 -1.5501 -4.7523 -0.4602 17 9 -2.7544 -4.1415 -0.4156 18 6 1.8944 -3.5998 -0.2657 19 8 3.0913 -3.8144 -0.2659 20 1 -0.4851 0.8400 -0.0004 21 1 -0.5687 -2.1764 0.7430 22 1 -0.5347 -1.9798 -1.0325 23 1 1.8780 -6.5180 -0.5782 24 1 -0.1913 -7.8297 -0.7742 25 1 -2.3802 -6.7126 -0.6932 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238550517.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:24 Heat of formation + Delta-G solvation = -55.747098 kcal Electronic energy + Delta-G solvation = -14448.754827 eV Core-core repulsion = 11727.409281 eV Total energy + Delta-G solvation = -2721.345546 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.86674 -41.83415 -38.75675 -37.09734 -34.68018 -32.08459 -31.45387 -27.91876 -27.28760 -24.21260 -22.78757 -21.32417 -19.44685 -18.28082 -17.85727 -17.03057 -16.90953 -16.51315 -16.25839 -16.17966 -15.77232 -14.66789 -14.28884 -14.04262 -14.02384 -13.51126 -13.26128 -12.84583 -12.79708 -12.63088 -12.20333 -12.13422 -11.41993 -10.63721 -10.21767 -9.94140 -9.62645 -8.60436 -6.13504 -0.22534 0.15823 1.34229 1.37651 1.53447 1.88072 2.13199 2.64754 2.77513 3.07867 3.15751 3.30145 3.65091 3.99794 4.28872 4.32168 4.61625 4.71086 4.88965 5.02824 5.11243 5.17471 5.27929 5.33142 5.65913 5.88381 6.24412 6.89462 7.00963 7.81017 8.46363 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.009633 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.247954 B = 2906.059540 C = 3597.969084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C -0.002 4.002 3 Si 1.010 2.990 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.337 4.337 8 H 0.093 0.907 9 N -0.436 5.436 10 C 0.181 3.819 11 C -0.160 4.160 12 C -0.129 4.129 13 C -0.079 4.079 14 C -0.079 4.079 15 C -0.122 4.122 16 C 0.106 3.894 17 F -0.142 7.142 18 C 0.443 3.557 19 O -0.635 6.635 20 H 0.285 0.715 21 H 0.085 0.915 22 H 0.089 0.911 23 H 0.141 0.859 24 H 0.190 0.810 25 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.781 -8.604 -1.292 11.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.205 4.205 3 Si 0.831 3.169 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.464 4.464 8 H 0.110 0.890 9 N -0.149 5.149 10 C 0.058 3.942 11 C -0.163 4.163 12 C -0.133 4.133 13 C -0.099 4.099 14 C -0.096 4.096 15 C -0.141 4.141 16 C 0.087 3.913 17 F -0.121 7.121 18 C 0.235 3.765 19 O -0.526 6.526 20 H 0.096 0.904 21 H 0.103 0.897 22 H 0.107 0.893 23 H 0.159 0.841 24 H 0.207 0.793 25 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -6.384 -8.347 -1.261 10.584 hybrid contribution 0.276 1.348 0.125 1.382 sum -6.107 -6.999 -1.136 9.358 Atomic orbital electron populations 1.69938 1.07088 1.29944 1.45695 1.26361 0.96811 1.02872 0.94422 0.84629 0.78019 0.75350 0.78866 1.19275 1.18912 1.18876 1.19871 0.93133 0.82448 1.50901 0.88965 1.43965 1.06538 1.06015 1.58379 1.20137 0.81378 0.89447 1.03280 1.20947 0.94086 0.97228 1.04069 1.20457 0.92937 0.95608 1.04262 1.21171 1.01173 0.89985 0.97530 1.21382 0.89114 1.02093 0.97012 1.21651 1.01517 0.90303 1.00621 1.17069 0.77791 0.91679 1.04785 1.91475 1.42607 1.83924 1.94071 1.18563 0.88043 0.83979 0.85949 1.90528 1.16837 1.84161 1.61071 0.90447 0.89666 0.89339 0.84078 0.79320 0.79957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.41 10.37 21.68 0.22 -46.19 15 2 C 0.00 -0.08 5.48 84.96 0.47 0.39 15 3 Si 1.01 41.13 29.56 68.60 2.03 43.16 15 4 H -0.27 -11.02 7.11 99.48 0.71 -10.32 15 5 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 6 H -0.26 -10.15 7.11 99.48 0.71 -9.45 15 7 C -0.34 -19.60 9.97 84.10 0.84 -18.76 15 8 H 0.09 5.56 7.75 -2.91 -0.02 5.53 15 9 N -0.44 -24.67 3.07 -643.09 -1.98 -26.64 15 10 C 0.18 8.97 5.41 85.63 0.46 9.44 15 11 C -0.16 -6.70 6.35 -19.58 -0.12 -6.83 15 12 C -0.13 -5.66 6.26 -20.15 -0.13 -5.78 15 13 C -0.08 -2.56 10.10 22.55 0.23 -2.33 15 14 C -0.08 -1.74 10.02 22.23 0.22 -1.52 15 15 C -0.12 -2.85 10.03 22.41 0.22 -2.62 15 16 C 0.11 3.53 7.29 22.27 0.16 3.69 15 17 F -0.14 -4.76 17.27 44.97 0.78 -3.98 15 18 C 0.44 24.64 7.91 86.72 0.69 25.33 15 19 O -0.63 -39.12 17.70 -4.01 -0.07 -39.19 15 20 H 0.29 13.62 8.31 -92.71 -0.77 12.85 15 21 H 0.09 4.38 7.60 -2.39 -0.02 4.37 15 22 H 0.09 4.56 7.34 -2.39 -0.02 4.54 15 23 H 0.14 4.22 8.06 -2.91 -0.02 4.20 15 24 H 0.19 2.21 8.06 -2.92 -0.02 2.19 15 25 H 0.18 2.64 8.06 -2.91 -0.02 2.62 15 Total: -1.00 -70.06 233.29 5.25 -64.82 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: 1.22 Total: 7.01 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 3.04 Total: 1.01 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -1.75 Total: -72.83 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.07 Total: -39.19 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.78 Total: -3.98 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -70.06 5.25 -64.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238550517.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.073 kcal (2) G-P(sol) polarization free energy of solvation -70.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds