Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46702 * 299.99135 * 9 7 2 11 11 C 1.50689 * 109.47616 * 59.99760 * 9 7 2 12 12 N 1.34777 * 120.00146 * 59.99895 * 11 9 7 13 13 O 1.21288 * 120.00261 * 240.00053 * 11 9 7 14 14 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 15 15 C 1.38241 * 119.99823 * 329.71648 * 14 9 7 16 16 C 1.38237 * 119.99882 * 179.81441 * 15 14 9 17 17 C 1.38234 * 119.99960 * 0.39839 * 16 15 14 18 18 C 1.38241 * 119.99868 * 359.85668 * 17 16 15 19 19 C 1.38226 * 120.00094 * 359.95945 * 18 17 16 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 0.96695 * 114.00613 * 300.00942 * 10 9 7 22 22 H 0.96996 * 120.00278 * 359.97438 * 12 11 9 23 23 H 0.97006 * 120.00205 * 180.02562 * 12 11 9 24 24 H 1.08002 * 119.99877 * 0.02562 * 15 14 9 25 25 H 1.07999 * 119.99768 * 180.23545 * 16 15 14 26 26 H 1.08000 * 119.99869 * 179.83712 * 17 16 15 27 27 H 1.07999 * 119.99669 * 179.97438 * 18 17 16 28 28 H 1.07998 * 120.00084 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9882 -0.5199 -1.1662 11 6 4.0134 -0.4846 1.2310 12 7 3.6874 -0.9458 2.4547 13 8 4.7108 0.5016 1.1206 14 6 4.0137 -2.6150 -0.0013 15 6 3.2691 -3.6119 0.6010 16 6 3.7279 -4.9159 0.5964 17 6 4.9353 -5.2216 -0.0033 18 6 5.6824 -4.2238 -0.6011 19 6 5.2218 -2.9205 -0.5998 20 1 -0.4850 0.8401 0.0004 21 1 3.7031 -0.9228 -1.9977 22 1 3.1294 -1.7342 2.5431 23 1 4.0102 -0.4888 3.2472 24 1 2.3272 -3.3725 1.0722 25 1 3.1444 -5.6953 1.0636 26 1 5.2950 -6.2399 -0.0046 27 1 6.6259 -4.4626 -1.0692 28 1 5.8056 -2.1410 -1.0663 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238571326.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -51.796860 kcal Electronic energy + Delta-G solvation = -15316.856324 eV Core-core repulsion = 12719.142378 eV Total energy + Delta-G solvation = -2597.713946 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61224 -38.00167 -35.52185 -33.13615 -32.31382 -30.81757 -30.37178 -27.39812 -23.81097 -21.99251 -21.49683 -19.46284 -17.84415 -16.80666 -16.46170 -15.50087 -15.08615 -14.92789 -14.19321 -13.85483 -13.44874 -13.29606 -13.07238 -12.78711 -12.18988 -11.92149 -11.34688 -10.94107 -10.61567 -10.50335 -10.30256 -9.88056 -8.92670 -8.84935 -8.72705 -8.44860 -8.36764 -8.06106 -6.31872 -4.50641 1.80242 1.86151 3.41018 3.53585 3.59947 3.92802 4.16375 4.36819 4.51754 5.03938 5.30944 5.35036 5.42987 5.63269 5.76476 5.99253 6.06706 6.38223 6.43824 6.56786 6.90244 6.93346 7.07225 7.32614 7.46464 7.51752 8.05767 8.12307 8.56706 8.80832 9.14437 9.28801 10.74314 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035791 B = 0.012121 C = 0.011159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.120991 B = 2309.471493 C = 2508.602813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.095 3.905 3 Si 0.856 3.144 4 H -0.286 1.286 5 H -0.200 1.200 6 H -0.302 1.302 7 C -0.566 4.566 8 H 0.092 0.908 9 C 0.244 3.756 10 O -0.550 6.550 11 C 0.537 3.463 12 N -0.846 5.846 13 O -0.550 6.550 14 C -0.081 4.081 15 C -0.098 4.098 16 C -0.130 4.130 17 C -0.133 4.133 18 C -0.130 4.130 19 C -0.112 4.112 20 H 0.269 0.731 21 H 0.368 0.632 22 H 0.403 0.597 23 H 0.391 0.609 24 H 0.136 0.864 25 H 0.116 0.884 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.689 -8.452 1.836 10.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.112 4.112 3 Si 0.683 3.317 4 H -0.213 1.213 5 H -0.122 1.122 6 H -0.230 1.230 7 C -0.602 4.602 8 H 0.110 0.890 9 C 0.201 3.799 10 O -0.355 6.355 11 C 0.324 3.676 12 N -0.409 5.409 13 O -0.428 6.428 14 C -0.082 4.082 15 C -0.115 4.115 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.148 4.148 19 C -0.130 4.130 20 H 0.079 0.921 21 H 0.215 0.785 22 H 0.232 0.768 23 H 0.221 0.779 24 H 0.154 0.846 25 H 0.134 0.866 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.243 -7.359 1.988 10.515 hybrid contribution -0.313 0.291 0.069 0.433 sum 6.929 -7.068 2.056 10.110 Atomic orbital electron populations 1.69903 1.06623 1.28024 1.46412 1.24969 0.94749 0.99861 0.91650 0.87293 0.82952 0.81706 0.79757 1.21301 1.12224 1.23040 1.21283 0.86747 0.95619 1.56562 0.88992 1.17761 0.94279 0.84081 0.83746 1.86669 1.77468 1.56170 1.15222 1.20557 0.77502 0.83924 0.85641 1.43539 1.56174 1.34040 1.07178 1.90620 1.38108 1.26984 1.87130 1.20591 0.93917 0.96553 0.97093 1.21328 0.99686 0.91861 0.98671 1.21138 0.96432 0.96625 1.00653 1.21034 0.95691 0.98652 0.99718 1.21032 0.99761 0.93219 1.00792 1.21131 0.95944 0.96403 0.99571 0.92099 0.78485 0.76824 0.77910 0.84609 0.86585 0.86959 0.86808 0.85768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.35 13.96 55.43 0.77 -24.58 15 2 C 0.10 2.65 5.45 -17.82 -0.10 2.55 15 3 Si 0.86 22.95 23.83 -169.99 -4.05 18.90 15 4 H -0.29 -7.99 7.11 56.52 0.40 -7.59 15 5 H -0.20 -5.51 4.78 56.52 0.27 -5.24 15 6 H -0.30 -8.11 7.11 56.52 0.40 -7.71 15 7 C -0.57 -14.42 7.98 -34.44 -0.27 -14.69 15 8 H 0.09 2.42 6.29 -52.49 -0.33 2.09 15 9 C 0.24 5.58 0.65 -94.08 -0.06 5.52 15 10 O -0.55 -12.78 8.42 -55.14 -0.46 -13.24 15 11 C 0.54 12.61 4.77 -10.99 -0.05 12.56 15 12 N -0.85 -16.00 8.67 31.22 0.27 -15.73 15 13 O -0.55 -14.64 14.68 -14.36 -0.21 -14.86 15 14 C -0.08 -1.57 4.65 -104.62 -0.49 -2.06 15 15 C -0.10 -1.71 8.10 -39.58 -0.32 -2.03 15 16 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 15 17 C -0.13 -1.87 10.05 -39.58 -0.40 -2.27 15 18 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 15 19 C -0.11 -1.99 9.35 -39.59 -0.37 -2.36 15 20 H 0.27 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.37 7.31 9.03 45.56 0.41 7.72 15 22 H 0.40 6.85 7.72 -40.82 -0.32 6.53 15 23 H 0.39 6.40 8.93 -40.82 -0.36 6.03 15 24 H 0.14 2.43 6.32 -52.49 -0.33 2.10 15 25 H 0.12 1.42 8.06 -52.49 -0.42 1.00 15 26 H 0.11 1.26 8.06 -52.49 -0.42 0.84 15 27 H 0.11 1.40 8.06 -52.49 -0.42 0.98 15 28 H 0.12 2.21 7.48 -52.49 -0.39 1.81 15 LS Contribution 237.90 15.07 3.59 3.59 Total: -1.00 -32.86 237.90 -4.81 -37.67 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -1.86 Total: 15.71 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.86 Total: -7.46 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: 1.04 Total: -40.31 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.67 Total: -28.10 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.05 Total: 18.90 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -32.86 -4.81 -37.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238571326.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.123 kcal (2) G-P(sol) polarization free energy of solvation -32.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds