Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 O 1.42903 * 109.46702 * 299.99135 * 9 7 2 11 11 C 1.50689 * 109.47616 * 59.99760 * 9 7 2 12 12 N 1.34777 * 120.00146 * 59.99895 * 11 9 7 13 13 O 1.21288 * 120.00261 * 240.00053 * 11 9 7 14 14 C 1.50699 * 109.46824 * 180.02562 * 9 7 2 15 15 C 1.38241 * 119.99823 * 329.71648 * 14 9 7 16 16 C 1.38237 * 119.99882 * 179.81441 * 15 14 9 17 17 C 1.38234 * 119.99960 * 0.39839 * 16 15 14 18 18 C 1.38241 * 119.99868 * 359.85668 * 17 16 15 19 19 C 1.38226 * 120.00094 * 359.95945 * 18 17 16 20 20 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 21 21 H 0.96695 * 114.00613 * 300.00942 * 10 9 7 22 22 H 0.96996 * 120.00278 * 359.97438 * 12 11 9 23 23 H 0.97006 * 120.00205 * 180.02562 * 12 11 9 24 24 H 1.08002 * 119.99877 * 0.02562 * 15 14 9 25 25 H 1.07999 * 119.99768 * 180.23545 * 16 15 14 26 26 H 1.08000 * 119.99869 * 179.83712 * 17 16 15 27 27 H 1.07999 * 119.99669 * 179.97438 * 18 17 16 28 28 H 1.07998 * 120.00084 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 3.9882 -0.5199 -1.1662 11 6 4.0134 -0.4846 1.2310 12 7 3.6874 -0.9458 2.4547 13 8 4.7108 0.5016 1.1206 14 6 4.0137 -2.6150 -0.0013 15 6 3.2691 -3.6119 0.6010 16 6 3.7279 -4.9159 0.5964 17 6 4.9353 -5.2216 -0.0033 18 6 5.6824 -4.2238 -0.6011 19 6 5.2218 -2.9205 -0.5998 20 1 -0.4850 0.8401 0.0004 21 1 3.7031 -0.9228 -1.9977 22 1 3.1294 -1.7342 2.5431 23 1 4.0102 -0.4888 3.2472 24 1 2.3272 -3.3725 1.0722 25 1 3.1444 -5.6953 1.0636 26 1 5.2950 -6.2399 -0.0046 27 1 6.6259 -4.4626 -1.0692 28 1 5.8056 -2.1410 -1.0663 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238571326.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -78.341287 kcal Electronic energy + Delta-G solvation = -15318.007377 eV Core-core repulsion = 12719.142378 eV Total energy + Delta-G solvation = -2598.864999 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.25021 -39.50469 -37.28140 -34.97447 -34.31018 -32.29227 -31.62209 -29.14638 -25.64978 -23.30788 -22.94908 -21.15507 -19.69684 -18.50549 -18.00052 -17.24852 -16.93224 -16.57277 -15.58157 -15.33198 -15.21327 -15.13811 -14.93350 -14.12729 -13.85173 -13.42987 -13.18207 -12.74657 -12.54121 -12.15929 -11.85332 -11.72770 -10.92866 -10.68597 -10.53211 -10.28323 -9.68804 -9.47895 -8.49146 -6.62518 0.52906 0.62419 1.25796 1.36199 1.68028 1.83493 2.32806 2.60507 2.87343 3.06028 3.96120 3.99768 4.23705 4.30025 4.45012 4.59077 4.80649 4.86641 5.16307 5.19966 5.31890 5.68947 5.71992 5.87794 5.93141 5.99935 6.25084 6.45768 6.52464 7.04705 7.20025 7.43853 8.60813 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.035791 B = 0.012121 C = 0.011159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.120991 B = 2309.471493 C = 2508.602813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.304 1.304 5 H -0.212 1.212 6 H -0.306 1.306 7 C -0.540 4.540 8 H 0.084 0.916 9 C 0.242 3.758 10 O -0.563 6.563 11 C 0.528 3.472 12 N -0.826 5.826 13 O -0.589 6.589 14 C -0.105 4.105 15 C -0.110 4.110 16 C -0.125 4.125 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.126 4.126 20 H 0.269 0.731 21 H 0.379 0.621 22 H 0.414 0.586 23 H 0.405 0.595 24 H 0.125 0.875 25 H 0.147 0.853 26 H 0.152 0.848 27 H 0.144 0.856 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -10.964 2.052 13.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.232 1.232 5 H -0.134 1.134 6 H -0.234 1.234 7 C -0.577 4.577 8 H 0.102 0.898 9 C 0.199 3.801 10 O -0.371 6.371 11 C 0.314 3.686 12 N -0.391 5.391 13 O -0.471 6.471 14 C -0.106 4.106 15 C -0.128 4.128 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.144 4.144 20 H 0.079 0.921 21 H 0.228 0.772 22 H 0.245 0.755 23 H 0.237 0.763 24 H 0.143 0.857 25 H 0.164 0.836 26 H 0.170 0.830 27 H 0.162 0.838 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 8.323 -9.898 2.223 13.122 hybrid contribution -0.575 0.923 0.018 1.088 sum 7.748 -8.975 2.241 12.067 Atomic orbital electron populations 1.69945 1.07216 1.28195 1.49248 1.25309 0.94872 1.01056 0.92678 0.86748 0.81723 0.80930 0.78240 1.23177 1.13428 1.23405 1.21487 0.88412 0.94473 1.53355 0.89812 1.17720 0.92502 0.86506 0.83383 1.86620 1.77442 1.56985 1.16005 1.20809 0.77377 0.83463 0.86914 1.43378 1.55130 1.33978 1.06575 1.90590 1.40133 1.28505 1.87829 1.20303 0.95556 0.94757 0.99993 1.21295 0.99395 0.92965 0.99190 1.21474 0.96959 0.95913 0.99912 1.21505 0.94671 1.00244 0.97495 1.21375 1.00838 0.92008 1.00091 1.21148 0.95490 0.97765 1.00033 0.92116 0.77212 0.75547 0.76312 0.85683 0.83553 0.83045 0.83847 0.86756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.03 13.96 21.45 0.30 -52.73 15 2 C 0.06 3.60 5.45 84.66 0.46 4.06 15 3 Si 0.89 48.29 23.83 68.60 1.63 49.92 15 4 H -0.30 -17.12 7.11 99.48 0.71 -16.41 15 5 H -0.21 -11.77 4.78 99.48 0.48 -11.30 15 6 H -0.31 -16.40 7.11 99.48 0.71 -15.70 15 7 C -0.54 -27.47 7.98 25.60 0.20 -27.27 15 8 H 0.08 4.40 6.29 -2.91 -0.02 4.38 15 9 C 0.24 10.99 0.65 -13.03 -0.01 10.98 15 10 O -0.56 -26.29 8.42 -129.94 -1.09 -27.38 15 11 C 0.53 24.65 4.77 87.65 0.42 25.07 15 12 N -0.83 -30.56 8.67 -173.54 -1.51 -32.07 15 13 O -0.59 -31.52 14.68 15.98 0.23 -31.29 15 14 C -0.11 -3.97 4.65 -19.86 -0.09 -4.06 15 15 C -0.11 -3.66 8.10 22.27 0.18 -3.48 15 16 C -0.12 -3.21 10.05 22.27 0.22 -2.99 15 17 C -0.12 -2.80 10.05 22.27 0.22 -2.58 15 18 C -0.13 -3.26 10.05 22.27 0.22 -3.04 15 19 C -0.13 -4.24 9.35 22.27 0.21 -4.03 15 20 H 0.27 15.14 8.31 -92.70 -0.77 14.36 15 21 H 0.38 15.12 9.03 -74.06 -0.67 14.45 15 22 H 0.41 13.58 7.72 -92.71 -0.72 12.87 15 23 H 0.41 12.81 8.93 -92.70 -0.83 11.98 15 24 H 0.13 4.33 6.32 -2.91 -0.02 4.31 15 25 H 0.15 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.15 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.14 2.86 8.06 -2.91 -0.02 2.84 15 28 H 0.11 3.99 7.48 -2.91 -0.02 3.97 15 Total: -1.00 -70.32 237.90 0.39 -69.93 By element: Atomic # 1 Polarization: 32.18 SS G_CDS: -1.22 Total: 30.95 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 2.04 Total: -7.33 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -1.21 Total: -84.80 kcal Atomic # 8 Polarization: -57.81 SS G_CDS: -0.86 Total: -58.67 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 1.63 Total: 49.92 kcal Total: -70.32 0.39 -69.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238571326.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.414 kcal (2) G-P(sol) polarization free energy of solvation -70.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds