Wall clock time and date at job start Mon Mar 30 2020 03:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30901 * 1 3 3 Si 1.86795 * 120.00488 * 2 1 4 4 H 1.48501 * 109.47426 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46996 * 300.00036 * 3 2 1 6 6 H 1.48504 * 109.47281 * 59.99605 * 3 2 1 7 7 C 1.39871 * 119.99535 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99867 * 163.63424 * 7 2 1 9 9 C 1.41139 * 120.00340 * 343.64263 * 7 2 1 10 10 C 1.40908 * 120.15019 * 333.86934 * 9 7 2 11 11 C 1.36326 * 119.83363 * 179.97438 * 10 9 7 12 12 C 1.39587 * 120.16031 * 359.97438 * 11 10 9 13 13 N 1.38849 * 119.84228 * 179.97438 * 12 11 10 14 14 C 1.39544 * 120.31664 * 359.75486 * 12 11 10 15 15 C 1.36363 * 120.16255 * 0.50179 * 14 12 11 16 16 C 1.50691 * 120.08379 * 179.77662 * 15 14 12 17 17 C 1.50706 * 109.46912 * 264.71996 * 16 15 14 18 18 O 1.20816 * 120.00078 * 0.02562 * 17 16 15 19 19 O 1.34227 * 119.99684 * 179.97438 * 17 16 15 20 20 H 0.97013 * 119.99594 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.08455 * 0.02562 * 10 9 7 22 22 H 1.07996 * 119.91736 * 180.02562 * 11 10 9 23 23 H 0.97006 * 120.00070 * 0.02562 * 13 12 11 24 24 H 0.97003 * 120.00383 * 180.02562 * 13 12 11 25 25 H 1.07997 * 119.92305 * 180.27141 * 14 12 11 26 26 H 1.08999 * 109.47524 * 144.72361 * 16 15 14 27 27 H 1.09001 * 109.47567 * 24.71845 * 16 15 14 28 28 H 0.96702 * 116.99875 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6176 0.0000 4 1 3.7031 1.3462 0.0006 5 1 1.8844 2.3964 -1.2125 6 1 1.8844 2.3964 1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0555 -1.2305 -0.2630 9 6 1.3454 -2.4088 0.3453 10 6 0.2157 -2.3753 1.1869 11 6 -0.4199 -3.5357 1.5153 12 6 0.0454 -4.7548 1.0196 13 7 -0.6067 -5.9328 1.3588 14 6 1.1602 -4.7949 0.1812 15 6 1.8091 -3.6427 -0.1515 16 6 3.0157 -3.6886 -1.0530 17 6 4.2679 -3.7199 -0.2150 18 8 4.1886 -3.7068 0.9905 19 8 5.4713 -3.7634 -0.8080 20 1 -0.4850 0.8402 -0.0004 21 1 -0.1462 -1.4327 1.5701 22 1 -1.2861 -3.5116 2.1598 23 1 -1.3840 -5.9072 1.9387 24 1 -0.2851 -6.7813 1.0160 25 1 1.5122 -5.7412 -0.2022 26 1 3.0271 -2.8043 -1.6902 27 1 2.9717 -4.5834 -1.6739 28 1 6.2456 -3.7818 -0.2289 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238584943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:46 Heat of formation + Delta-G solvation = -100.908260 kcal Electronic energy + Delta-G solvation = -14718.923856 eV Core-core repulsion = 12119.080280 eV Total energy + Delta-G solvation = -2599.843576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.13661 -39.59193 -36.91226 -36.13398 -34.51283 -32.80733 -30.18065 -28.91674 -26.06760 -23.37769 -22.64029 -21.08234 -19.03642 -18.88740 -17.68736 -17.26202 -16.80957 -16.64461 -16.54999 -15.63465 -14.75526 -14.42454 -14.08385 -13.67288 -13.53995 -13.21733 -12.91765 -12.77984 -12.72268 -12.33488 -12.25659 -11.47622 -11.44850 -11.25524 -11.13177 -10.47166 -9.28272 -8.53520 -8.18078 -5.98795 1.01330 1.19307 1.40188 1.45688 1.52866 1.59725 2.26998 2.47329 2.88665 3.53353 3.89138 4.18261 4.41369 4.58879 4.69607 4.84244 5.02536 5.22647 5.31421 5.48776 5.75734 5.77683 5.90526 5.94642 6.21366 6.43489 6.71925 6.99017 7.10574 7.21968 7.28795 7.44602 8.49726 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.013331 C = 0.008536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.801152 B = 2099.850480 C = 3279.622429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.034 3.966 3 Si 0.968 3.032 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.489 4.489 8 H 0.065 0.935 9 C 0.055 3.945 10 C -0.143 4.143 11 C -0.181 4.181 12 C 0.108 3.892 13 N -0.880 5.880 14 C -0.161 4.161 15 C -0.156 4.156 16 C -0.046 4.046 17 C 0.483 3.517 18 O -0.545 6.545 19 O -0.515 6.515 20 H 0.281 0.719 21 H 0.098 0.902 22 H 0.104 0.896 23 H 0.395 0.605 24 H 0.396 0.604 25 H 0.117 0.883 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.045 -5.902 -2.016 7.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.189 1.189 6 H -0.196 1.196 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.052 3.948 10 C -0.164 4.164 11 C -0.203 4.203 12 C 0.007 3.993 13 N -0.424 5.424 14 C -0.184 4.184 15 C -0.158 4.158 16 C -0.083 4.083 17 C 0.327 3.673 18 O -0.435 6.435 19 O -0.328 6.328 20 H 0.092 0.908 21 H 0.116 0.884 22 H 0.122 0.878 23 H 0.222 0.778 24 H 0.225 0.775 25 H 0.135 0.865 26 H 0.125 0.875 27 H 0.142 0.858 28 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 3.527 -5.667 -1.982 6.963 hybrid contribution 0.422 0.676 0.722 1.076 sum 3.949 -4.991 -1.259 6.487 Atomic orbital electron populations 1.69914 1.08535 1.29591 1.38586 1.26529 0.95416 1.03809 0.92093 0.85373 0.79348 0.77560 0.78695 1.18807 1.18942 1.19635 1.19453 0.96910 0.92213 1.43433 0.91679 1.17576 0.93019 0.92620 0.91570 1.20873 0.98923 0.96538 1.00017 1.20265 1.02263 0.92221 1.05572 1.17454 0.95203 0.86980 0.99708 1.41714 1.35942 1.05001 1.59751 1.19958 0.97910 0.97195 1.03315 1.19025 0.99301 0.93475 1.04031 1.19982 0.85881 1.05907 0.96566 1.23964 0.85446 0.70405 0.87500 1.90679 1.87938 1.46753 1.18134 1.84516 1.16942 1.85574 1.45791 0.90825 0.88430 0.87780 0.77766 0.77543 0.86470 0.87545 0.85757 0.71966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.13 10.97 21.82 0.24 -44.89 15 2 C 0.03 1.76 5.15 85.23 0.44 2.20 15 3 Si 0.97 40.12 29.59 68.60 2.03 42.15 15 4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15 5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15 6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 7 C -0.49 -26.68 8.12 23.38 0.19 -26.49 15 8 H 0.07 3.47 6.66 -2.91 -0.02 3.45 15 9 C 0.06 3.00 5.56 -21.27 -0.12 2.88 15 10 C -0.14 -7.81 8.62 22.48 0.19 -7.62 15 11 C -0.18 -8.61 9.82 22.15 0.22 -8.40 15 12 C 0.11 4.60 6.77 38.67 0.26 4.86 15 13 N -0.88 -28.00 9.04 -51.07 -0.46 -28.46 15 14 C -0.16 -6.95 9.44 22.15 0.21 -6.74 15 15 C -0.16 -7.38 4.40 -19.66 -0.09 -7.46 15 16 C -0.05 -1.78 5.29 29.10 0.15 -1.63 15 17 C 0.48 18.50 7.95 71.24 0.57 19.06 15 18 O -0.55 -25.45 16.79 21.99 0.37 -25.08 15 19 O -0.51 -14.71 13.42 -51.39 -0.69 -15.40 15 20 H 0.28 13.83 8.30 -92.70 -0.77 13.06 15 21 H 0.10 5.61 6.22 -2.91 -0.02 5.59 15 22 H 0.10 4.44 8.06 -2.91 -0.02 4.42 15 23 H 0.39 10.90 8.83 -92.70 -0.82 10.08 15 24 H 0.40 10.47 8.83 -92.71 -0.82 9.65 15 25 H 0.12 4.24 8.05 -2.91 -0.02 4.22 15 26 H 0.11 4.17 7.06 -2.39 -0.02 4.16 15 27 H 0.12 3.79 8.04 -2.39 -0.02 3.77 15 28 H 0.42 8.09 9.10 -74.06 -0.67 7.42 15 Total: -1.00 -67.74 251.39 2.43 -65.31 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -1.08 Total: 35.71 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 2.03 Total: -29.33 kcal Atomic # 7 Polarization: -73.13 SS G_CDS: -0.22 Total: -73.36 kcal Atomic # 8 Polarization: -40.16 SS G_CDS: -0.32 Total: -40.48 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal Total: -67.74 2.43 -65.31 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238584943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.600 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds