Wall clock time and date at job start Mon Mar 30 2020 03:04:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30901 * 1
3 3 Si 1.86795 * 120.00488 * 2 1
4 4 H 1.48501 * 109.47426 * 179.97438 * 3 2 1
5 5 H 1.48505 * 109.46996 * 300.00036 * 3 2 1
6 6 H 1.48504 * 109.47281 * 59.99605 * 3 2 1
7 7 C 1.39871 * 119.99535 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99867 * 163.63424 * 7 2 1
9 9 C 1.41139 * 120.00340 * 343.64263 * 7 2 1
10 10 C 1.40908 * 120.15019 * 333.86934 * 9 7 2
11 11 C 1.36326 * 119.83363 * 179.97438 * 10 9 7
12 12 C 1.39587 * 120.16031 * 359.97438 * 11 10 9
13 13 N 1.38849 * 119.84228 * 179.97438 * 12 11 10
14 14 C 1.39544 * 120.31664 * 359.75486 * 12 11 10
15 15 C 1.36363 * 120.16255 * 0.50179 * 14 12 11
16 16 C 1.50691 * 120.08379 * 179.77662 * 15 14 12
17 17 C 1.50706 * 109.46912 * 264.71996 * 16 15 14
18 18 O 1.20816 * 120.00078 * 0.02562 * 17 16 15
19 19 O 1.34227 * 119.99684 * 179.97438 * 17 16 15
20 20 H 0.97013 * 119.99594 * 0.02562 * 1 2 3
21 21 H 1.07999 * 120.08455 * 0.02562 * 10 9 7
22 22 H 1.07996 * 119.91736 * 180.02562 * 11 10 9
23 23 H 0.97006 * 120.00070 * 0.02562 * 13 12 11
24 24 H 0.97003 * 120.00383 * 180.02562 * 13 12 11
25 25 H 1.07997 * 119.92305 * 180.27141 * 14 12 11
26 26 H 1.08999 * 109.47524 * 144.72361 * 16 15 14
27 27 H 1.09001 * 109.47567 * 24.71845 * 16 15 14
28 28 H 0.96702 * 116.99875 * 179.97438 * 19 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3090 0.0000 0.0000
3 14 2.2431 1.6176 0.0000
4 1 3.7031 1.3462 0.0006
5 1 1.8844 2.3964 -1.2125
6 1 1.8844 2.3964 1.2125
7 6 2.0083 -1.2114 0.0005
8 1 3.0555 -1.2305 -0.2630
9 6 1.3454 -2.4088 0.3453
10 6 0.2157 -2.3753 1.1869
11 6 -0.4199 -3.5357 1.5153
12 6 0.0454 -4.7548 1.0196
13 7 -0.6067 -5.9328 1.3588
14 6 1.1602 -4.7949 0.1812
15 6 1.8091 -3.6427 -0.1515
16 6 3.0157 -3.6886 -1.0530
17 6 4.2679 -3.7199 -0.2150
18 8 4.1886 -3.7068 0.9905
19 8 5.4713 -3.7634 -0.8080
20 1 -0.4850 0.8402 -0.0004
21 1 -0.1462 -1.4327 1.5701
22 1 -1.2861 -3.5116 2.1598
23 1 -1.3840 -5.9072 1.9387
24 1 -0.2851 -6.7813 1.0160
25 1 1.5122 -5.7412 -0.2022
26 1 3.0271 -2.8043 -1.6902
27 1 2.9717 -4.5834 -1.6739
28 1 6.2456 -3.7818 -0.2289
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238584943.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:46
Heat of formation + Delta-G solvation = -100.908260 kcal
Electronic energy + Delta-G solvation = -14718.923856 eV
Core-core repulsion = 12119.080280 eV
Total energy + Delta-G solvation = -2599.843576 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 221.084 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.13661 -39.59193 -36.91226 -36.13398 -34.51283 -32.80733 -30.18065 -28.91674
-26.06760 -23.37769 -22.64029 -21.08234 -19.03642 -18.88740 -17.68736 -17.26202
-16.80957 -16.64461 -16.54999 -15.63465 -14.75526 -14.42454 -14.08385 -13.67288
-13.53995 -13.21733 -12.91765 -12.77984 -12.72268 -12.33488 -12.25659 -11.47622
-11.44850 -11.25524 -11.13177 -10.47166 -9.28272 -8.53520 -8.18078 -5.98795
1.01330 1.19307 1.40188 1.45688 1.52866 1.59725 2.26998 2.47329
2.88665 3.53353 3.89138 4.18261 4.41369 4.58879 4.69607 4.84244
5.02536 5.22647 5.31421 5.48776 5.75734 5.77683 5.90526 5.94642
6.21366 6.43489 6.71925 6.99017 7.10574 7.21968 7.28795 7.44602
8.49726
Molecular weight = 221.08amu
Principal moments of inertia in cm(-1)
A = 0.019984 B = 0.013331 C = 0.008536
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1400.801152 B = 2099.850480 C = 3279.622429
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.838 5.838
2 C 0.034 3.966
3 Si 0.968 3.032
4 H -0.264 1.264
5 H -0.265 1.265
6 H -0.271 1.271
7 C -0.489 4.489
8 H 0.065 0.935
9 C 0.055 3.945
10 C -0.143 4.143
11 C -0.181 4.181
12 C 0.108 3.892
13 N -0.880 5.880
14 C -0.161 4.161
15 C -0.156 4.156
16 C -0.046 4.046
17 C 0.483 3.517
18 O -0.545 6.545
19 O -0.515 6.515
20 H 0.281 0.719
21 H 0.098 0.902
22 H 0.104 0.896
23 H 0.395 0.605
24 H 0.396 0.604
25 H 0.117 0.883
26 H 0.107 0.893
27 H 0.125 0.875
28 H 0.420 0.580
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.045 -5.902 -2.016 7.434
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.466 5.466
2 C -0.178 4.178
3 Si 0.790 3.210
4 H -0.188 1.188
5 H -0.189 1.189
6 H -0.196 1.196
7 C -0.520 4.520
8 H 0.083 0.917
9 C 0.052 3.948
10 C -0.164 4.164
11 C -0.203 4.203
12 C 0.007 3.993
13 N -0.424 5.424
14 C -0.184 4.184
15 C -0.158 4.158
16 C -0.083 4.083
17 C 0.327 3.673
18 O -0.435 6.435
19 O -0.328 6.328
20 H 0.092 0.908
21 H 0.116 0.884
22 H 0.122 0.878
23 H 0.222 0.778
24 H 0.225 0.775
25 H 0.135 0.865
26 H 0.125 0.875
27 H 0.142 0.858
28 H 0.280 0.720
Dipole moment (debyes) X Y Z Total
from point charges 3.527 -5.667 -1.982 6.963
hybrid contribution 0.422 0.676 0.722 1.076
sum 3.949 -4.991 -1.259 6.487
Atomic orbital electron populations
1.69914 1.08535 1.29591 1.38586 1.26529 0.95416 1.03809 0.92093
0.85373 0.79348 0.77560 0.78695 1.18807 1.18942 1.19635 1.19453
0.96910 0.92213 1.43433 0.91679 1.17576 0.93019 0.92620 0.91570
1.20873 0.98923 0.96538 1.00017 1.20265 1.02263 0.92221 1.05572
1.17454 0.95203 0.86980 0.99708 1.41714 1.35942 1.05001 1.59751
1.19958 0.97910 0.97195 1.03315 1.19025 0.99301 0.93475 1.04031
1.19982 0.85881 1.05907 0.96566 1.23964 0.85446 0.70405 0.87500
1.90679 1.87938 1.46753 1.18134 1.84516 1.16942 1.85574 1.45791
0.90825 0.88430 0.87780 0.77766 0.77543 0.86470 0.87545 0.85757
0.71966
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.84 -45.13 10.97 21.82 0.24 -44.89 15
2 C 0.03 1.76 5.15 85.23 0.44 2.20 15
3 Si 0.97 40.12 29.59 68.60 2.03 42.15 15
4 H -0.26 -10.85 7.11 99.48 0.71 -10.14 15
5 H -0.26 -10.37 7.11 99.48 0.71 -9.66 15
6 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15
7 C -0.49 -26.68 8.12 23.38 0.19 -26.49 15
8 H 0.07 3.47 6.66 -2.91 -0.02 3.45 15
9 C 0.06 3.00 5.56 -21.27 -0.12 2.88 15
10 C -0.14 -7.81 8.62 22.48 0.19 -7.62 15
11 C -0.18 -8.61 9.82 22.15 0.22 -8.40 15
12 C 0.11 4.60 6.77 38.67 0.26 4.86 15
13 N -0.88 -28.00 9.04 -51.07 -0.46 -28.46 15
14 C -0.16 -6.95 9.44 22.15 0.21 -6.74 15
15 C -0.16 -7.38 4.40 -19.66 -0.09 -7.46 15
16 C -0.05 -1.78 5.29 29.10 0.15 -1.63 15
17 C 0.48 18.50 7.95 71.24 0.57 19.06 15
18 O -0.55 -25.45 16.79 21.99 0.37 -25.08 15
19 O -0.51 -14.71 13.42 -51.39 -0.69 -15.40 15
20 H 0.28 13.83 8.30 -92.70 -0.77 13.06 15
21 H 0.10 5.61 6.22 -2.91 -0.02 5.59 15
22 H 0.10 4.44 8.06 -2.91 -0.02 4.42 15
23 H 0.39 10.90 8.83 -92.70 -0.82 10.08 15
24 H 0.40 10.47 8.83 -92.71 -0.82 9.65 15
25 H 0.12 4.24 8.05 -2.91 -0.02 4.22 15
26 H 0.11 4.17 7.06 -2.39 -0.02 4.16 15
27 H 0.12 3.79 8.04 -2.39 -0.02 3.77 15
28 H 0.42 8.09 9.10 -74.06 -0.67 7.42 15
Total: -1.00 -67.74 251.39 2.43 -65.31
By element:
Atomic # 1 Polarization: 36.79 SS G_CDS: -1.08 Total: 35.71 kcal
Atomic # 6 Polarization: -31.36 SS G_CDS: 2.03 Total: -29.33 kcal
Atomic # 7 Polarization: -73.13 SS G_CDS: -0.22 Total: -73.36 kcal
Atomic # 8 Polarization: -40.16 SS G_CDS: -0.32 Total: -40.48 kcal
Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.15 kcal
Total: -67.74 2.43 -65.31 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238584943.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.600 kcal
(2) G-P(sol) polarization free energy of solvation -67.742 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.342 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -100.908 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds