Wall clock time and date at job start Mon Mar 30 2020 03:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99783 * 2 1 4 4 H 1.48499 * 109.46756 * 239.99611 * 3 2 1 5 5 H 1.48491 * 109.47181 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47018 * 120.00006 * 3 2 1 7 7 C 1.37870 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00383 * 179.97438 * 7 2 1 9 9 C 1.50709 * 120.00299 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46676 * 62.92075 * 9 7 2 11 11 O 1.42895 * 109.46685 * 302.92695 * 9 7 2 12 12 C 1.50695 * 109.47197 * 182.91783 * 9 7 2 13 13 C 1.37909 * 120.08818 * 238.49688 * 12 9 7 14 14 C 1.38382 * 120.16857 * 179.97438 * 13 12 9 15 15 C 1.38425 * 120.35067 * 0.03114 * 14 13 12 16 16 C 1.37862 * 120.17478 * 359.97239 * 15 14 13 17 17 C 1.39838 * 120.08840 * 58.76435 * 12 9 7 18 18 C 1.47167 * 120.16907 * 0.02562 * 17 12 9 19 19 O 1.21256 * 120.00062 * 174.70289 * 18 17 12 20 20 H 0.97004 * 120.00487 * 0.02562 * 1 2 3 21 21 H 1.00894 * 111.00229 * 61.53253 * 10 9 7 22 22 H 1.00906 * 110.99699 * 185.48867 * 10 9 7 23 23 H 0.96706 * 113.99996 * 304.69499 * 11 9 7 24 24 H 1.07994 * 119.91537 * 0.02562 * 13 12 9 25 25 H 1.08005 * 119.82117 * 180.02562 * 14 13 12 26 26 H 1.08001 * 119.90892 * 179.97438 * 15 14 13 27 27 H 1.08001 * 120.09009 * 180.02562 * 16 15 14 28 28 H 1.08004 * 120.00484 * 354.70327 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 0.4607 -2.6083 -1.2330 11 8 0.3783 -2.5453 1.1311 12 6 2.2287 -3.6436 0.0735 13 6 2.2488 -4.6001 -0.9198 14 6 3.1463 -5.6515 -0.8547 15 6 4.0296 -5.7524 0.2063 16 6 4.0219 -4.8043 1.2070 17 6 3.1142 -3.7416 1.1514 18 6 3.0949 -2.7286 2.2188 19 8 3.7955 -2.8670 3.1987 20 1 -0.4851 0.8400 -0.0004 21 1 1.0575 -2.6031 -2.0465 22 1 -0.1223 -3.4317 -1.2173 23 1 0.8240 -2.4065 1.9780 24 1 1.5630 -4.5281 -1.7509 25 1 3.1575 -6.3972 -1.6359 26 1 4.7268 -6.5761 0.2501 27 1 4.7119 -4.8841 2.0340 28 1 2.4567 -1.8619 2.1294 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238595163.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:17 Heat of formation + Delta-G solvation = -63.107167 kcal Electronic energy + Delta-G solvation = -15140.896475 eV Core-core repulsion = 12542.692077 eV Total energy + Delta-G solvation = -2598.204398 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.11236 -39.19556 -37.74284 -34.26607 -33.62323 -32.24945 -30.87308 -27.94757 -25.75605 -24.40941 -21.83150 -21.63358 -19.28270 -18.16520 -17.26913 -16.94033 -16.72442 -15.91587 -15.47044 -15.28045 -15.15072 -14.98020 -14.67856 -14.54852 -13.69883 -13.40523 -12.93677 -12.79733 -12.70543 -12.24332 -12.09550 -11.51181 -10.76350 -10.66844 -10.37268 -9.90049 -9.67498 -9.03363 -7.97214 -6.30609 -0.27320 0.46285 1.44378 1.47204 1.51261 1.52396 2.42826 2.88432 3.20898 3.49369 3.65963 3.95128 4.03610 4.13851 4.41500 4.51859 4.65057 4.92562 5.02049 5.06822 5.39778 5.47327 5.49266 5.68990 5.98918 6.04601 6.41694 6.55294 6.64971 7.12014 7.40919 7.67134 8.99817 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.029589 B = 0.011738 C = 0.009958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.063460 B = 2384.825436 C = 2811.198496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.059 3.941 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.583 4.583 8 H 0.051 0.949 9 C 0.448 3.552 10 N -0.812 5.812 11 O -0.570 6.570 12 C -0.073 4.073 13 C -0.154 4.154 14 C -0.077 4.077 15 C -0.144 4.144 16 C -0.075 4.075 17 C -0.202 4.202 18 C 0.382 3.618 19 O -0.505 6.505 20 H 0.256 0.744 21 H 0.346 0.654 22 H 0.319 0.681 23 H 0.363 0.637 24 H 0.135 0.865 25 H 0.161 0.839 26 H 0.159 0.841 27 H 0.131 0.869 28 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.527 -9.217 -2.254 10.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.150 4.150 3 Si 0.760 3.240 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.621 4.621 8 H 0.069 0.931 9 C 0.318 3.682 10 N -0.346 5.346 11 O -0.376 6.376 12 C -0.077 4.077 13 C -0.172 4.172 14 C -0.095 4.095 15 C -0.162 4.162 16 C -0.094 4.094 17 C -0.204 4.204 18 C 0.246 3.754 19 O -0.382 6.382 20 H 0.066 0.934 21 H 0.162 0.838 22 H 0.132 0.868 23 H 0.211 0.789 24 H 0.153 0.847 25 H 0.178 0.822 26 H 0.176 0.824 27 H 0.149 0.851 28 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.900 -8.582 -1.990 10.081 hybrid contribution 1.176 0.411 0.148 1.254 sum 6.076 -8.171 -1.842 10.347 Atomic orbital electron populations 1.70294 1.06821 1.26364 1.43885 1.25551 0.95115 1.01162 0.93133 0.86024 0.78758 0.80433 0.78741 1.19988 1.21069 1.19802 1.21444 0.92107 0.90982 1.57531 0.93083 1.17690 0.81358 0.87802 0.81336 1.58130 1.27390 1.45946 1.03102 1.86288 1.40194 1.94774 1.16305 1.22373 0.95913 0.96485 0.92892 1.21318 1.01172 0.95160 0.99546 1.21756 0.92862 0.96857 0.98004 1.21432 1.00730 0.99829 0.94177 1.21599 0.96279 0.92659 0.98820 1.20767 1.01127 0.99582 0.98894 1.24877 0.80121 0.88162 0.82271 1.90382 1.38761 1.77381 1.31722 0.93444 0.83801 0.86777 0.78936 0.84719 0.82166 0.82358 0.85124 0.86165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.50 12.33 21.44 0.26 -46.24 15 2 C 0.06 3.07 5.33 84.65 0.45 3.52 15 3 Si 0.93 41.36 29.54 68.60 2.03 43.39 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.29 -12.55 7.11 99.48 0.71 -11.84 15 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 15 7 C -0.58 -29.09 5.94 25.60 0.15 -28.94 15 8 H 0.05 2.57 7.33 -2.91 -0.02 2.55 15 9 C 0.45 20.45 0.81 43.42 0.04 20.48 15 10 N -0.81 -35.40 7.87 -270.00 -2.12 -37.52 15 11 O -0.57 -27.87 12.41 -148.98 -1.85 -29.71 15 12 C -0.07 -2.84 4.99 -19.56 -0.10 -2.94 15 13 C -0.15 -4.86 9.03 22.23 0.20 -4.66 15 14 C -0.08 -1.92 10.04 22.35 0.22 -1.70 15 15 C -0.14 -3.63 10.03 22.23 0.22 -3.41 15 16 C -0.08 -2.40 9.60 22.58 0.22 -2.19 15 17 C -0.20 -7.72 5.67 -20.15 -0.11 -7.84 15 18 C 0.38 15.60 9.14 70.17 0.64 16.24 15 19 O -0.51 -21.64 17.18 -2.96 -0.05 -21.69 15 20 H 0.26 13.71 8.31 -92.71 -0.77 12.94 15 21 H 0.35 13.74 8.03 -89.70 -0.72 13.02 15 22 H 0.32 12.63 8.37 -89.69 -0.75 11.88 15 23 H 0.36 16.29 6.05 -74.05 -0.45 15.84 15 24 H 0.14 3.83 6.19 -2.91 -0.02 3.81 15 25 H 0.16 2.68 8.06 -2.91 -0.02 2.66 15 26 H 0.16 2.76 8.06 -2.91 -0.02 2.74 15 27 H 0.13 3.94 7.66 -2.91 -0.02 3.92 15 28 H 0.12 5.19 4.45 -2.91 -0.01 5.18 15 Total: -1.00 -62.49 243.74 -0.49 -62.98 By element: Atomic # 1 Polarization: 40.91 SS G_CDS: -0.69 Total: 40.22 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: 1.93 Total: -11.43 kcal Atomic # 7 Polarization: -81.90 SS G_CDS: -1.86 Total: -83.76 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -1.90 Total: -51.40 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Total: -62.49 -0.49 -62.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238595163.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.128 kcal (2) G-P(sol) polarization free energy of solvation -62.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds