Wall clock time and date at job start Mon Mar 30 2020 03:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 N 1.32854 * 119.76221 * 80.55489 * 3 2 1 5 5 C 1.31516 * 121.64096 * 179.97438 * 4 3 2 6 6 C 1.38568 * 120.98879 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.28836 * 180.02562 * 6 5 4 8 8 H 1.09008 * 109.46795 * 160.00050 * 7 6 5 9 9 N 1.46895 * 109.47742 * 39.99922 * 7 6 5 10 10 C 1.50704 * 109.47152 * 279.99562 * 7 6 5 11 11 H 1.08004 * 119.99612 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00384 * 180.02562 * 10 7 6 13 13 N 1.31523 * 119.99602 * 0.02562 * 12 10 7 14 14 Si 1.86792 * 120.00356 * 180.02562 * 12 10 7 15 15 H 1.48500 * 109.47424 * 89.99882 * 14 12 10 16 16 H 1.48502 * 109.47200 * 210.00357 * 14 12 10 17 17 H 1.48506 * 109.47089 * 329.99886 * 14 12 10 18 18 C 1.38542 * 119.41907 * 359.97438 * 6 5 4 19 19 C 1.38845 * 118.48343 * 359.75424 * 18 6 5 20 20 F 1.35097 * 120.50513 * 180.26911 * 19 18 6 21 21 H 1.08006 * 119.50602 * 179.97438 * 5 4 3 22 22 H 1.00902 * 111.00216 * 176.04478 * 9 7 6 23 23 H 1.00902 * 111.00103 * 300.00110 * 9 7 6 24 24 H 0.97001 * 119.99541 * 179.97438 * 13 12 10 25 25 H 1.07996 * 120.76177 * 179.97438 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2275 -0.1883 -1.1377 5 6 4.5420 -0.1943 -1.1803 6 6 5.2939 -0.0019 -0.0324 7 6 6.7994 -0.0112 -0.0994 8 1 7.2053 0.4920 0.7782 9 7 7.2399 0.6893 -1.3131 10 6 7.2918 -1.4351 -0.1346 11 1 6.5852 -2.2516 -0.1112 12 6 8.6443 -1.6955 -0.1967 13 7 9.5048 -0.7012 -0.2247 14 14 9.2547 -3.4603 -0.2410 15 1 9.3549 -3.9143 -1.6514 16 1 10.5919 -3.5379 0.4002 17 1 8.3025 -4.3320 0.4931 18 6 4.6495 0.2001 1.1773 19 6 3.2612 0.2077 1.1949 20 9 2.5911 0.4066 2.3510 21 1 5.0429 -0.3516 -2.1241 22 1 8.2463 0.7531 -1.3487 23 1 6.8764 0.2417 -2.1411 24 1 10.4563 -0.8844 -0.2680 25 1 5.2141 0.3519 2.0853 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238596927.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:43 Heat of formation + Delta-G solvation = 0.141300 kcal Electronic energy + Delta-G solvation = -13944.390664 eV Core-core repulsion = 11257.761371 eV Total energy + Delta-G solvation = -2686.629292 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.066 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.20909 -41.35403 -37.95008 -36.80097 -34.00572 -32.97146 -31.50660 -28.16421 -26.14491 -24.97223 -22.59701 -20.67932 -18.82367 -18.61702 -17.85568 -17.11357 -16.94610 -16.36015 -15.54431 -15.29662 -14.91001 -14.81061 -14.45875 -14.25044 -13.93193 -13.90000 -13.30095 -13.23607 -12.82663 -12.69281 -12.07200 -11.95656 -10.91445 -10.79590 -10.59233 -9.94771 -9.18636 -8.12613 -6.37020 -0.60263 -0.02074 1.27306 1.43003 1.48311 1.54756 1.66744 2.23285 2.39818 2.69225 2.84221 3.09062 3.52638 3.57074 3.94275 4.23108 4.42716 4.56486 4.80505 5.03007 5.42668 5.59848 5.67117 5.99485 6.09990 6.53538 6.64796 6.91141 7.14380 7.40147 8.82520 Molecular weight = 221.07amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.007076 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.850299 B = 3955.813873 C = 3993.141847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C 0.289 3.711 3 C 0.122 3.878 4 N -0.432 5.432 5 C 0.111 3.889 6 C -0.025 4.025 7 C 0.243 3.757 8 H 0.037 0.963 9 N -0.843 5.843 10 C -0.561 4.561 11 H 0.055 0.945 12 C 0.033 3.967 13 N -0.909 5.909 14 Si 0.953 3.047 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.110 4.110 19 C 0.111 3.889 20 F -0.121 7.121 21 H 0.184 0.816 22 H 0.352 0.648 23 H 0.324 0.676 24 H 0.269 0.731 25 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.838 0.765 0.880 4.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.094 5.094 2 C -0.028 4.028 3 C -0.016 4.016 4 N -0.141 5.141 5 C -0.050 4.050 6 C -0.028 4.028 7 C 0.132 3.868 8 H 0.055 0.945 9 N -0.373 5.373 10 C -0.601 4.601 11 H 0.073 0.927 12 C -0.169 4.169 13 N -0.548 5.548 14 Si 0.780 3.220 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.136 4.136 19 C 0.087 3.913 20 F -0.099 7.099 21 H 0.201 0.799 22 H 0.168 0.832 23 H 0.135 0.865 24 H 0.078 0.922 25 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -7.315 1.335 0.455 7.449 hybrid contribution 1.876 -1.658 0.774 2.621 sum -5.438 -0.322 1.230 5.585 Atomic orbital electron populations 1.81179 1.11836 1.08964 1.07442 1.24813 0.91477 0.93301 0.93178 1.16247 0.86231 1.09128 0.89976 1.67605 1.11023 1.10279 1.25222 1.22799 0.86760 0.95548 0.99901 1.21528 0.99117 0.89577 0.92609 1.17893 0.84409 0.92184 0.92285 0.94509 1.59505 1.18167 1.55640 1.04010 1.21937 0.92220 0.93155 1.52751 0.92709 1.25576 0.96942 1.00492 0.93893 1.69805 1.02809 1.32193 1.49949 0.85630 0.77414 0.80758 0.78233 1.20169 1.21239 1.19910 1.21672 0.91029 1.00003 1.00929 1.18367 0.90552 1.01161 0.81240 1.91544 1.80195 1.91989 1.46199 0.79880 0.83228 0.86542 0.92161 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -13.70 18.54 19.00 0.35 -13.34 15 2 C 0.29 8.98 15.18 88.33 1.34 10.32 15 3 C 0.12 3.72 6.59 40.59 0.27 3.99 15 4 N -0.43 -13.65 10.28 -188.95 -1.94 -15.59 15 5 C 0.11 3.52 10.45 84.82 0.89 4.41 15 6 C -0.02 -0.84 4.91 -19.71 -0.10 -0.94 15 7 C 0.24 9.95 2.96 43.42 0.13 10.07 15 8 H 0.04 1.67 8.03 -2.38 -0.02 1.65 15 9 N -0.84 -33.09 9.02 -174.95 -1.58 -34.67 15 10 C -0.56 -25.59 8.71 25.60 0.22 -25.36 15 11 H 0.05 2.52 7.74 -2.91 -0.02 2.49 15 12 C 0.03 1.54 5.38 84.65 0.46 1.99 15 13 N -0.91 -44.41 11.54 21.45 0.25 -44.16 15 14 Si 0.95 38.48 29.54 68.60 2.03 40.50 15 15 H -0.28 -10.99 7.11 99.48 0.71 -10.28 15 16 H -0.29 -11.62 7.11 99.48 0.71 -10.91 15 17 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 18 C -0.11 -3.31 9.79 22.49 0.22 -3.09 15 19 C 0.11 3.23 7.31 22.77 0.17 3.39 15 20 F -0.12 -3.36 16.82 44.97 0.76 -2.60 15 21 H 0.18 5.28 6.67 -2.91 -0.02 5.26 15 22 H 0.35 15.34 7.08 -89.69 -0.64 14.71 15 23 H 0.32 11.58 7.35 -89.69 -0.66 10.92 15 24 H 0.27 12.69 8.31 -92.71 -0.77 11.92 15 25 H 0.17 4.56 8.06 -2.91 -0.02 4.53 15 Total: -1.00 -48.56 241.58 3.43 -45.14 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.03 Total: 19.94 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 3.59 Total: 4.79 kcal Atomic # 7 Polarization: -104.85 SS G_CDS: -2.92 Total: -107.77 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.76 Total: -2.60 kcal Atomic # 14 Polarization: 38.48 SS G_CDS: 2.03 Total: 40.50 kcal Total: -48.56 3.43 -45.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238596927.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -48.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds