Wall clock time and date at job start Mon Mar 30 2020 03:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31480 * 1 3 3 Si 1.86803 * 119.99916 * 2 1 4 4 H 1.48502 * 109.46724 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47462 * 300.00258 * 3 2 1 6 6 H 1.48503 * 109.47035 * 60.00676 * 3 2 1 7 7 C 1.38695 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00212 * 180.02562 * 7 2 1 9 9 O 1.34970 * 119.99605 * 359.97438 * 7 2 1 10 10 C 1.34732 * 116.99927 * 180.02562 * 9 7 2 11 11 O 1.21515 * 119.99518 * 0.02562 * 10 9 7 12 12 N 1.34773 * 119.99910 * 179.97438 * 10 9 7 13 13 C 1.46497 * 119.99546 * 180.02562 * 12 10 9 14 14 C 1.50707 * 109.47012 * 180.02562 * 13 12 10 15 15 C 1.38238 * 119.99792 * 90.00154 * 14 13 12 16 16 C 1.38235 * 119.99712 * 179.97438 * 15 14 13 17 17 C 1.38234 * 120.00220 * 359.97124 * 16 15 14 18 18 C 1.38233 * 120.00037 * 0.28719 * 17 16 15 19 19 C 1.38234 * 120.00179 * 269.98090 * 14 13 12 20 20 H 0.96998 * 120.00305 * 359.97438 * 1 2 3 21 21 H 0.96998 * 120.00430 * 0.02562 * 12 10 9 22 22 H 1.09005 * 109.47643 * 60.00506 * 13 12 10 23 23 H 1.09000 * 109.47513 * 299.99670 * 13 12 10 24 24 H 1.08005 * 120.00068 * 359.97438 * 15 14 13 25 25 H 1.07999 * 119.99770 * 179.97438 * 16 15 14 26 26 H 1.08002 * 119.99744 * 180.02562 * 17 16 15 27 27 H 1.07998 * 120.00395 * 179.72811 * 18 17 16 28 28 H 1.07999 * 119.99968 * 359.97438 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6178 0.0000 4 1 3.7088 1.3463 -0.0006 5 1 1.8900 2.3965 -1.2124 6 1 1.8901 2.3964 1.2126 7 6 2.0083 -1.2011 -0.0005 8 1 3.0883 -1.2011 -0.0001 9 8 1.3334 -2.3700 -0.0005 10 6 2.0672 -3.4999 -0.0005 11 8 3.2807 -3.4363 -0.0001 12 7 1.4553 -4.7008 0.0000 13 6 2.2532 -5.9293 0.0006 14 6 1.3352 -7.1245 0.0004 15 6 0.9147 -7.6729 -1.1968 16 6 0.0731 -8.7695 -1.1969 17 6 -0.3476 -9.3181 0.0001 18 6 0.0686 -8.7665 1.1974 19 6 0.9140 -7.6727 1.1975 20 1 -0.4850 0.8400 0.0004 21 1 0.4867 -4.7516 0.0000 22 1 2.8820 -5.9539 0.8906 23 1 2.8821 -5.9547 -0.8894 24 1 1.2437 -7.2446 -2.1321 25 1 -0.2558 -9.1977 -2.1323 26 1 -1.0048 -10.1752 0.0000 27 1 -0.2635 -9.1923 2.1326 28 1 1.2431 -7.2447 2.1328 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238609169.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:53 Heat of formation + Delta-G solvation = -76.048331 kcal Electronic energy + Delta-G solvation = -13965.760495 eV Core-core repulsion = 11366.994927 eV Total energy + Delta-G solvation = -2598.765569 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.22117 -40.13229 -37.69767 -35.82073 -34.24282 -32.26836 -31.79974 -27.94814 -26.60945 -23.47283 -22.70351 -22.08285 -20.09822 -19.56179 -17.66639 -17.15131 -17.01586 -16.51555 -16.03960 -15.98057 -15.52786 -14.67471 -14.35386 -14.02553 -13.86598 -13.59277 -13.46778 -13.08519 -12.41335 -12.15290 -12.01199 -11.97255 -11.91619 -11.42163 -10.68470 -10.18322 -9.82744 -9.80186 -8.49241 -6.28967 0.26661 0.49540 1.34363 1.39572 1.53304 1.83640 2.02049 2.36455 2.93408 3.02073 3.63495 3.92332 4.12580 4.16915 4.30791 4.35892 4.58672 4.70223 4.76817 5.04310 5.14130 5.16094 5.42747 5.54263 5.60763 5.66234 5.88306 6.08582 6.49739 6.81560 6.99719 7.96977 8.73639 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.063131 B = 0.005205 C = 0.005074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.415809 B = 5378.182122 C = 5517.110449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.011 4.011 3 Si 1.023 2.977 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.405 4.405 8 H 0.082 0.918 9 O -0.264 6.264 10 C 0.605 3.395 11 O -0.631 6.631 12 N -0.700 5.700 13 C 0.185 3.815 14 C -0.117 4.117 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.112 4.112 18 C -0.126 4.126 19 C -0.110 4.110 20 H 0.276 0.724 21 H 0.408 0.592 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.126 0.874 25 H 0.146 0.854 26 H 0.151 0.849 27 H 0.146 0.854 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 -16.772 0.003 16.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.209 4.209 3 Si 0.842 3.158 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.482 4.482 8 H 0.100 0.900 9 O -0.170 6.170 10 C 0.362 3.638 11 O -0.527 6.527 12 N -0.362 5.362 13 C 0.063 3.937 14 C -0.118 4.118 15 C -0.129 4.129 16 C -0.144 4.144 17 C -0.130 4.130 18 C -0.144 4.144 19 C -0.129 4.129 20 H 0.086 0.914 21 H 0.244 0.756 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.144 0.856 25 H 0.164 0.836 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.708 -16.540 0.003 16.628 hybrid contribution 0.032 0.726 0.000 0.727 sum -1.676 -15.814 0.003 15.903 Atomic orbital electron populations 1.70118 1.07531 1.29011 1.48541 1.26536 0.97038 1.02065 0.95257 0.84497 0.77668 0.74527 0.79141 1.18841 1.18497 1.18487 1.21403 0.91964 0.79975 1.54883 0.90027 1.83734 1.38811 1.13121 1.81343 1.18835 0.84070 0.82886 0.78027 1.90732 1.14677 1.87663 1.59605 1.44493 1.10493 1.01662 1.79559 1.20087 0.91970 0.79090 1.02505 1.19753 1.00414 0.96744 0.94846 1.21302 0.97563 0.96619 0.97384 1.21468 0.97382 0.95860 0.99672 1.21599 0.99168 1.00192 0.92068 1.21469 0.97363 0.95879 0.99671 1.21301 0.97530 0.96647 0.97387 0.91449 0.75613 0.91388 0.91397 0.85571 0.83594 0.83173 0.83593 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.67 13.67 21.62 0.30 -55.37 15 2 C -0.01 -0.63 5.49 84.85 0.47 -0.16 15 3 Si 1.02 44.93 29.55 68.60 2.03 46.96 15 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 15 5 H -0.26 -10.66 7.11 99.48 0.71 -9.96 15 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 15 7 C -0.41 -25.60 9.65 67.93 0.66 -24.94 15 8 H 0.08 5.24 6.86 -2.91 -0.02 5.22 15 9 O -0.26 -16.33 9.80 10.15 0.10 -16.23 15 10 C 0.61 32.59 8.69 129.79 1.13 33.72 15 11 O -0.63 -36.94 15.59 19.79 0.31 -36.63 15 12 N -0.70 -28.34 5.55 -594.47 -3.30 -31.64 15 13 C 0.19 6.02 5.80 85.64 0.50 6.51 15 14 C -0.12 -3.01 5.25 -19.86 -0.10 -3.11 15 15 C -0.11 -2.49 9.70 22.27 0.22 -2.28 15 16 C -0.13 -2.26 10.05 22.27 0.22 -2.03 15 17 C -0.11 -1.81 10.05 22.27 0.22 -1.58 15 18 C -0.13 -2.26 10.05 22.27 0.22 -2.03 15 19 C -0.11 -2.49 9.70 22.27 0.22 -2.27 15 20 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 21 H 0.41 15.13 8.57 -92.71 -0.79 14.34 15 22 H 0.07 2.24 8.09 -2.38 -0.02 2.22 15 23 H 0.07 2.24 8.08 -2.39 -0.02 2.22 15 24 H 0.13 2.73 8.06 -2.91 -0.02 2.71 15 25 H 0.15 1.87 8.06 -2.91 -0.02 1.84 15 26 H 0.15 1.52 8.06 -2.91 -0.02 1.49 15 27 H 0.15 1.87 8.06 -2.91 -0.02 1.85 15 28 H 0.13 2.73 8.06 -2.91 -0.02 2.71 15 Total: -1.00 -76.21 260.11 3.55 -72.65 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.38 Total: 18.44 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 3.75 Total: 1.82 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -3.01 Total: -87.01 kcal Atomic # 8 Polarization: -53.27 SS G_CDS: 0.41 Total: -52.86 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.21 3.55 -72.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238609169.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.394 kcal (2) G-P(sol) polarization free energy of solvation -76.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds