Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47401 * 270.00576 * 3 2 1 5 5 H 1.48502 * 109.47091 * 30.00323 * 3 2 1 6 6 H 1.48500 * 109.47476 * 150.00381 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00193 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46864 * 300.00369 * 9 7 2 11 11 O 1.42907 * 109.47127 * 60.00019 * 9 7 2 12 12 C 1.50702 * 109.47161 * 180.02562 * 9 7 2 13 13 C 1.38403 * 119.82278 * 95.00297 * 12 9 7 14 14 C 1.37884 * 120.17088 * 179.97438 * 13 12 9 15 15 C 1.39851 * 119.82554 * 0.02562 * 14 13 12 16 16 C 1.47165 * 120.17652 * 180.02562 * 15 14 13 17 17 O 1.21261 * 119.99825 * 359.72068 * 16 15 14 18 18 C 1.39857 * 119.65811 * 0.27834 * 15 14 13 19 19 C 1.37895 * 119.81976 * 359.42386 * 18 15 14 20 20 H 0.97001 * 119.99979 * 359.97438 * 1 2 3 21 21 H 1.00905 * 110.99423 * 176.04590 * 10 9 7 22 22 H 1.00900 * 110.99514 * 299.99282 * 10 9 7 23 23 H 0.96699 * 113.99560 * 59.99919 * 11 9 7 24 24 H 1.07999 * 119.91424 * 0.02562 * 13 12 9 25 25 H 1.08000 * 120.09116 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.00588 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.09371 * 179.70244 * 18 15 14 28 28 H 1.08000 * 119.91544 * 180.30375 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 0.4069 -2.5772 1.1992 11 8 0.4290 -2.5747 -1.1671 12 6 2.2304 -3.6447 -0.0005 13 6 2.5981 -4.2359 1.1956 14 6 3.4931 -5.2847 1.2039 15 6 4.0300 -5.7504 -0.0005 16 6 4.9855 -6.8697 -0.0007 17 8 5.3131 -7.3874 1.0458 18 6 3.6583 -5.1435 -1.2044 19 6 2.7574 -4.0997 -1.1966 20 1 -0.4850 0.8401 0.0004 21 1 -0.1571 -3.4139 1.1907 22 1 0.9653 -2.5261 2.0381 23 1 0.9209 -2.5291 -1.9984 24 1 2.1822 -3.8753 2.1249 25 1 3.7788 -5.7453 2.1380 26 1 5.3988 -7.2269 -0.9324 27 1 4.0723 -5.4944 -2.1382 28 1 2.4655 -3.6331 -2.1259 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238619907.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -43.904222 kcal Electronic energy + Delta-G solvation = -14598.997549 eV Core-core repulsion = 12001.625853 eV Total energy + Delta-G solvation = -2597.371696 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.61210 -38.24650 -35.86077 -32.42163 -31.86296 -30.51617 -29.81517 -26.10497 -24.43996 -22.32206 -21.35914 -19.82232 -17.47825 -16.85813 -15.98334 -15.37709 -14.89244 -14.30772 -14.16716 -14.14025 -13.77185 -13.43253 -12.96904 -12.83976 -12.20687 -11.99510 -11.42937 -10.95933 -10.90259 -10.67835 -10.22081 -9.79082 -9.63384 -8.83477 -8.63813 -8.53432 -8.15768 -7.29450 -5.93892 -4.23801 0.95389 1.75185 2.69147 3.26197 3.34294 3.36774 4.16527 4.36381 4.39560 5.05293 5.23237 5.26353 5.33493 5.41547 5.69399 5.73358 5.86665 6.23377 6.29774 6.53038 6.68691 6.77197 7.09927 7.27775 7.51190 7.75369 7.92303 8.27508 8.57874 8.92812 9.36491 9.58295 11.04578 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.042278 B = 0.007642 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.122271 B = 3663.113556 C = 3810.210100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.099 3.901 3 Si 0.884 3.116 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.577 4.577 8 H 0.055 0.945 9 C 0.454 3.546 10 N -0.797 5.797 11 O -0.553 6.553 12 C -0.059 4.059 13 C -0.142 4.142 14 C -0.058 4.058 15 C -0.223 4.223 16 C 0.387 3.613 17 O -0.476 6.476 18 C -0.068 4.068 19 C -0.130 4.130 20 H 0.256 0.744 21 H 0.308 0.692 22 H 0.337 0.663 23 H 0.360 0.640 24 H 0.123 0.877 25 H 0.124 0.876 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -8.253 -2.419 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.112 4.112 3 Si 0.711 3.289 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.615 4.615 8 H 0.074 0.926 9 C 0.323 3.677 10 N -0.329 5.329 11 O -0.356 6.356 12 C -0.063 4.063 13 C -0.161 4.161 14 C -0.076 4.076 15 C -0.225 4.225 16 C 0.247 3.753 17 O -0.351 6.351 18 C -0.087 4.087 19 C -0.149 4.149 20 H 0.066 0.934 21 H 0.119 0.881 22 H 0.153 0.847 23 H 0.205 0.795 24 H 0.141 0.859 25 H 0.142 0.858 26 H 0.114 0.886 27 H 0.142 0.858 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.926 -7.773 -1.663 9.351 hybrid contribution 1.506 0.237 -0.258 1.546 sum 6.432 -7.535 -1.921 10.091 Atomic orbital electron populations 1.70210 1.05595 1.25599 1.42850 1.24948 0.94551 0.98442 0.93286 0.86775 0.80088 0.83886 0.78154 1.20588 1.21087 1.19943 1.21126 0.92257 0.89584 1.58516 0.92642 1.17796 0.81202 0.87189 0.81492 1.58256 1.28024 1.43629 1.02949 1.86335 1.38100 1.96230 1.14985 1.22769 0.95847 0.95034 0.92603 1.21043 0.99525 0.97003 0.98509 1.21315 0.94140 0.94841 0.97303 1.20697 1.04782 1.02302 0.94672 1.24001 0.78091 0.80426 0.92740 1.90484 1.53757 1.53851 1.37013 1.21313 0.95747 0.95048 0.96583 1.20972 0.98001 0.97285 0.98645 0.93377 0.88058 0.84722 0.79472 0.85884 0.85823 0.88620 0.85788 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.91 12.32 55.43 0.68 -22.23 15 2 C 0.10 2.65 5.33 -17.82 -0.09 2.55 15 3 Si 0.88 20.49 29.54 -169.99 -5.02 15.47 15 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.58 -14.99 8.36 -34.44 -0.29 -15.27 15 8 H 0.06 1.46 7.74 -52.48 -0.41 1.05 15 9 C 0.45 10.57 0.97 -70.01 -0.07 10.50 15 10 N -0.80 -18.23 8.00 -5.01 -0.04 -18.27 15 11 O -0.55 -13.32 12.39 -35.23 -0.44 -13.76 15 12 C -0.06 -1.16 4.86 -104.50 -0.51 -1.67 15 13 C -0.14 -2.56 9.25 -39.65 -0.37 -2.93 15 14 C -0.06 -0.95 9.60 -39.11 -0.38 -1.32 15 15 C -0.22 -3.32 5.87 -105.06 -0.62 -3.94 15 16 C 0.39 4.97 11.46 34.35 0.39 5.36 15 17 O -0.48 -7.73 17.17 5.57 0.10 -7.64 15 18 C -0.07 -0.97 9.80 -39.10 -0.38 -1.35 15 19 C -0.13 -2.22 9.31 -39.65 -0.37 -2.59 15 20 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 21 H 0.31 6.50 9.06 -39.29 -0.36 6.15 15 22 H 0.34 7.12 7.18 -39.29 -0.28 6.84 15 23 H 0.36 7.46 7.37 45.56 0.34 7.80 15 24 H 0.12 2.09 6.26 -52.49 -0.33 1.76 15 25 H 0.12 1.90 7.65 -52.49 -0.40 1.50 15 26 H 0.10 0.82 8.06 -52.49 -0.42 0.39 15 27 H 0.12 1.28 8.06 -52.49 -0.42 0.85 15 28 H 0.13 1.97 6.59 -52.49 -0.35 1.62 15 LS Contribution 251.83 15.07 3.79 3.79 Total: -1.00 -31.53 251.83 -5.37 -36.89 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -1.77 Total: 16.39 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -2.68 Total: -10.65 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.64 Total: -40.50 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.34 Total: -21.40 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.53 -5.37 -36.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619907.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.014 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds