Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00150 * 2 1 4 4 H 1.48500 * 109.47401 * 270.00576 * 3 2 1 5 5 H 1.48502 * 109.47091 * 30.00323 * 3 2 1 6 6 H 1.48500 * 109.47476 * 150.00381 * 3 2 1 7 7 C 1.37880 * 119.99915 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00193 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.46864 * 300.00369 * 9 7 2 11 11 O 1.42907 * 109.47127 * 60.00019 * 9 7 2 12 12 C 1.50702 * 109.47161 * 180.02562 * 9 7 2 13 13 C 1.38403 * 119.82278 * 95.00297 * 12 9 7 14 14 C 1.37884 * 120.17088 * 179.97438 * 13 12 9 15 15 C 1.39851 * 119.82554 * 0.02562 * 14 13 12 16 16 C 1.47165 * 120.17652 * 180.02562 * 15 14 13 17 17 O 1.21261 * 119.99825 * 359.72068 * 16 15 14 18 18 C 1.39857 * 119.65811 * 0.27834 * 15 14 13 19 19 C 1.37895 * 119.81976 * 359.42386 * 18 15 14 20 20 H 0.97001 * 119.99979 * 359.97438 * 1 2 3 21 21 H 1.00905 * 110.99423 * 176.04590 * 10 9 7 22 22 H 1.00900 * 110.99514 * 299.99282 * 10 9 7 23 23 H 0.96699 * 113.99560 * 59.99919 * 11 9 7 24 24 H 1.07999 * 119.91424 * 0.02562 * 13 12 9 25 25 H 1.08000 * 120.09116 * 180.02562 * 14 13 12 26 26 H 1.08002 * 120.00588 * 180.02562 * 16 15 14 27 27 H 1.08000 * 120.09371 * 179.70244 * 18 15 14 28 28 H 1.08000 * 119.91544 * 180.30375 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 0.4069 -2.5772 1.1992 11 8 0.4290 -2.5747 -1.1671 12 6 2.2304 -3.6447 -0.0005 13 6 2.5981 -4.2359 1.1956 14 6 3.4931 -5.2847 1.2039 15 6 4.0300 -5.7504 -0.0005 16 6 4.9855 -6.8697 -0.0007 17 8 5.3131 -7.3874 1.0458 18 6 3.6583 -5.1435 -1.2044 19 6 2.7574 -4.0997 -1.1966 20 1 -0.4850 0.8401 0.0004 21 1 -0.1571 -3.4139 1.1907 22 1 0.9653 -2.5261 2.0381 23 1 0.9209 -2.5291 -1.9984 24 1 2.1822 -3.8753 2.1249 25 1 3.7788 -5.7453 2.1380 26 1 5.3988 -7.2269 -0.9324 27 1 4.0723 -5.4944 -2.1382 28 1 2.4655 -3.6331 -2.1259 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619907.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -69.587992 kcal Electronic energy + Delta-G solvation = -14600.111281 eV Core-core repulsion = 12001.625853 eV Total energy + Delta-G solvation = -2598.485427 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.85955 -39.54224 -37.46510 -34.31915 -33.60376 -31.80723 -31.27949 -27.98093 -25.83983 -23.63573 -22.77220 -21.22690 -19.29031 -18.21684 -17.27397 -16.85290 -16.72913 -15.92825 -15.55092 -15.30484 -15.22609 -15.00159 -14.59895 -14.20785 -13.68954 -13.53237 -13.15608 -12.80295 -12.69528 -12.08253 -11.93497 -11.59786 -10.78868 -10.70579 -10.41019 -9.89055 -9.62754 -9.03116 -7.95088 -6.30074 -0.23742 0.49216 1.41785 1.44421 1.52137 1.57796 2.43766 2.92833 3.23892 3.40212 3.68679 3.89832 4.07280 4.16932 4.39542 4.47808 4.66294 4.93550 5.00829 5.09831 5.35634 5.45912 5.65183 5.70492 5.99364 6.05786 6.51581 6.53076 6.67681 7.13017 7.43885 7.74108 9.02218 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.042278 B = 0.007642 C = 0.007347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.122271 B = 3663.113556 C = 3810.210100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.054 3.946 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.583 4.583 8 H 0.046 0.954 9 C 0.449 3.551 10 N -0.813 5.813 11 O -0.572 6.572 12 C -0.088 4.088 13 C -0.154 4.154 14 C -0.070 4.070 15 C -0.224 4.224 16 C 0.399 3.601 17 O -0.512 6.512 18 C -0.050 4.050 19 C -0.143 4.143 20 H 0.253 0.747 21 H 0.315 0.685 22 H 0.342 0.658 23 H 0.370 0.630 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.160 0.840 27 H 0.175 0.825 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -9.437 -3.703 12.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.154 4.154 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.621 4.621 8 H 0.064 0.936 9 C 0.319 3.681 10 N -0.346 5.346 11 O -0.377 6.377 12 C -0.091 4.091 13 C -0.172 4.172 14 C -0.088 4.088 15 C -0.225 4.225 16 C 0.261 3.739 17 O -0.388 6.388 18 C -0.068 4.068 19 C -0.161 4.161 20 H 0.063 0.937 21 H 0.127 0.873 22 H 0.158 0.842 23 H 0.216 0.784 24 H 0.137 0.863 25 H 0.146 0.854 26 H 0.176 0.824 27 H 0.192 0.808 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.786 -8.961 -2.958 11.623 hybrid contribution 0.989 0.508 0.122 1.119 sum 7.775 -8.453 -2.837 11.830 Atomic orbital electron populations 1.70341 1.06957 1.26024 1.44739 1.25627 0.95193 1.01464 0.93113 0.85820 0.78683 0.80215 0.78233 1.19881 1.21252 1.19879 1.21429 0.91994 0.91292 1.57392 0.93561 1.17668 0.81596 0.87807 0.80991 1.58153 1.28805 1.44249 1.03388 1.86282 1.39187 1.96340 1.15872 1.22369 0.96828 0.95482 0.94458 1.21037 1.00359 0.97833 0.97973 1.21467 0.94128 0.94559 0.98673 1.21199 1.04406 1.02647 0.94212 1.24684 0.76459 0.78653 0.94085 1.90497 1.54695 1.54663 1.38956 1.21728 0.93760 0.93001 0.98307 1.21197 0.98653 0.98353 0.97925 0.93741 0.87334 0.84222 0.78358 0.86292 0.85437 0.82413 0.80759 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.67 12.32 21.45 0.26 -48.41 15 2 C 0.05 2.89 5.33 84.66 0.45 3.34 15 3 Si 0.94 42.46 29.54 68.60 2.03 44.49 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.29 -12.85 7.11 99.48 0.71 -12.15 15 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 7 C -0.58 -30.60 8.36 25.60 0.21 -30.39 15 8 H 0.05 2.45 7.74 -2.91 -0.02 2.43 15 9 C 0.45 21.22 0.97 43.42 0.04 21.27 15 10 N -0.81 -38.16 8.00 -269.97 -2.16 -40.32 15 11 O -0.57 -27.90 12.39 -148.98 -1.85 -29.74 15 12 C -0.09 -3.45 4.86 -19.79 -0.10 -3.54 15 13 C -0.15 -5.53 9.25 22.23 0.21 -5.32 15 14 C -0.07 -2.21 9.60 22.58 0.22 -1.99 15 15 C -0.22 -5.89 5.87 -20.15 -0.12 -6.01 15 16 C 0.40 8.44 11.46 70.17 0.80 9.24 15 17 O -0.51 -15.11 17.17 -2.97 -0.05 -15.17 15 18 C -0.05 -1.21 9.80 22.58 0.22 -0.99 15 19 C -0.14 -4.59 9.31 22.23 0.21 -4.38 15 20 H 0.25 14.01 8.31 -92.71 -0.77 13.24 15 21 H 0.31 13.69 9.06 -89.69 -0.81 12.88 15 22 H 0.34 14.96 7.18 -89.69 -0.64 14.31 15 23 H 0.37 15.47 7.37 -74.06 -0.55 14.93 15 24 H 0.12 4.19 6.26 -2.91 -0.02 4.17 15 25 H 0.13 3.84 7.65 -2.91 -0.02 3.82 15 26 H 0.16 1.56 8.06 -2.91 -0.02 1.54 15 27 H 0.18 2.45 8.06 -2.91 -0.02 2.42 15 28 H 0.13 3.97 6.59 -2.91 -0.02 3.95 15 Total: -1.00 -68.61 251.83 -0.40 -69.01 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.78 Total: 38.92 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 2.15 Total: -18.78 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -1.90 Total: -88.73 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -1.90 Total: -44.91 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -68.61 -0.40 -69.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619907.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.576 kcal (2) G-P(sol) polarization free energy of solvation -68.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds