Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47031 * 269.99611 * 3 2 1 5 5 H 1.48499 * 109.47022 * 29.99974 * 3 2 1 6 6 H 1.48504 * 109.46834 * 149.99790 * 3 2 1 7 7 C 1.37876 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00551 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47214 * 294.52199 * 9 7 2 11 11 O 1.42900 * 109.47189 * 54.51661 * 9 7 2 12 12 C 1.50696 * 109.47239 * 174.51940 * 9 7 2 13 13 C 1.37906 * 120.08762 * 359.57681 * 12 9 7 14 14 C 1.38382 * 120.17300 * 179.97438 * 13 12 9 15 15 C 1.38427 * 120.34913 * 0.02562 * 14 13 12 16 16 C 1.37865 * 120.17384 * 0.02562 * 15 14 13 17 17 C 1.39836 * 120.08864 * 179.29693 * 12 9 7 18 18 C 1.47165 * 120.17160 * 0.02845 * 17 12 9 19 19 O 1.21255 * 119.99954 * 359.97438 * 18 17 12 20 20 H 0.96999 * 120.00101 * 0.02562 * 1 2 3 21 21 H 1.00898 * 110.99680 * 299.99631 * 10 9 7 22 22 H 1.00894 * 110.99766 * 63.95451 * 10 9 7 23 23 H 0.96706 * 113.99697 * 60.00201 * 11 9 7 24 24 H 1.07994 * 119.91373 * 0.02562 * 13 12 9 25 25 H 1.07999 * 119.83081 * 179.97438 * 14 13 12 26 26 H 1.08005 * 119.91518 * 180.02562 * 15 14 13 27 27 H 1.08002 * 120.09029 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.99948 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 0.5079 -2.6356 1.2604 11 8 0.3361 -2.5209 -1.0969 12 6 2.2248 -3.6414 -0.1345 13 6 3.5762 -3.3887 -0.2431 14 6 4.4719 -4.4362 -0.3667 15 6 4.0201 -5.7446 -0.3829 16 6 2.6721 -6.0136 -0.2764 17 6 1.7610 -4.9605 -0.1442 18 6 0.3210 -5.2392 -0.0233 19 8 -0.4666 -4.3237 0.0855 20 1 -0.4850 0.8400 -0.0004 21 1 1.1332 -2.6230 2.0522 22 1 -0.1963 -1.9179 1.3443 23 1 0.7582 -2.4352 -1.9627 24 1 3.9364 -2.3706 -0.2308 25 1 5.5290 -4.2320 -0.4517 26 1 4.7254 -6.5568 -0.4792 27 1 2.3211 -7.0349 -0.2897 28 1 -0.0342 -6.2591 -0.0316 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238619931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -22.424881 kcal Electronic energy + Delta-G solvation = -15306.572381 eV Core-core repulsion = 12710.132100 eV Total energy + Delta-G solvation = -2596.440281 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.27330 -37.00564 -35.74495 -32.26643 -31.13610 -30.71779 -29.43446 -25.77039 -23.97421 -22.56504 -20.74266 -19.38648 -16.93320 -16.49209 -15.68189 -14.87395 -14.67111 -14.07446 -13.62942 -13.32118 -13.20103 -13.10367 -12.82375 -12.49237 -11.83735 -11.56582 -11.17584 -11.05804 -10.87570 -10.31100 -10.16680 -9.63820 -8.87118 -8.46294 -8.37295 -8.26737 -8.13423 -6.92100 -5.99346 -4.28650 1.45831 1.98755 3.21210 3.29393 3.30422 3.43851 4.30491 4.53878 5.04229 5.18824 5.32046 5.43693 5.50477 5.83379 5.99524 6.06933 6.32709 6.54201 6.60714 6.86700 7.01993 7.26969 7.39948 7.55135 7.76694 8.04347 8.57304 8.63074 8.70657 9.15918 9.41557 9.81999 10.92673 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.033522 B = 0.011855 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.073355 B = 2361.300557 C = 3013.828576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.084 3.916 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.607 4.607 8 H 0.064 0.936 9 C 0.458 3.542 10 N -0.817 5.817 11 O -0.529 6.529 12 C -0.033 4.033 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.148 4.148 16 C -0.099 4.099 17 C -0.157 4.157 18 C 0.334 3.666 19 O -0.352 6.352 20 H 0.262 0.738 21 H 0.316 0.684 22 H 0.356 0.644 23 H 0.346 0.654 24 H 0.142 0.858 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.118 0.882 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.932 -8.830 -0.538 10.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.123 4.123 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.328 3.672 10 N -0.351 5.351 11 O -0.330 6.330 12 C -0.035 4.035 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.167 4.167 16 C -0.117 4.117 17 C -0.158 4.158 18 C 0.185 3.815 19 O -0.216 6.216 20 H 0.072 0.928 21 H 0.126 0.874 22 H 0.172 0.828 23 H 0.189 0.811 24 H 0.159 0.841 25 H 0.131 0.869 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.575 -8.960 -0.274 10.064 hybrid contribution 1.713 1.823 -0.259 2.515 sum 6.287 -7.137 -0.533 9.527 Atomic orbital electron populations 1.69996 1.05629 1.26511 1.46317 1.25044 0.94716 0.98966 0.93577 0.86706 0.79968 0.83672 0.78215 1.20538 1.21132 1.19942 1.22529 0.93782 0.92353 1.55986 0.91785 1.17296 0.81435 0.85381 0.83083 1.58770 1.17760 1.56652 1.01884 1.86514 1.36068 1.95782 1.14609 1.21541 0.95264 0.95180 0.91539 1.21687 0.93149 1.00055 0.98905 1.21339 0.99258 0.93062 0.99630 1.20921 0.95465 0.96476 1.03791 1.21251 0.93181 0.98092 0.99195 1.21082 0.97085 0.93532 1.04114 1.23574 0.87854 0.93281 0.76827 1.90770 1.56241 1.47941 1.26639 0.92798 0.87371 0.82764 0.81108 0.84081 0.86868 0.86871 0.86402 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.99 11.23 55.43 0.62 -23.36 15 2 C 0.08 2.26 5.31 -17.82 -0.09 2.17 15 3 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 15 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 15 7 C -0.61 -15.88 7.99 -34.44 -0.28 -16.16 15 8 H 0.06 1.62 4.96 -52.49 -0.26 1.36 15 9 C 0.46 11.41 0.59 -70.01 -0.04 11.37 15 10 N -0.82 -20.46 6.31 -5.02 -0.03 -20.49 15 11 O -0.53 -14.02 9.82 -59.31 -0.58 -14.60 15 12 C -0.03 -0.72 5.15 -104.15 -0.54 -1.26 15 13 C -0.12 -2.34 9.14 -39.65 -0.36 -2.71 15 14 C -0.11 -1.84 10.04 -39.46 -0.40 -2.24 15 15 C -0.15 -2.18 10.03 -39.65 -0.40 -2.57 15 16 C -0.10 -1.52 9.80 -39.10 -0.38 -1.90 15 17 C -0.16 -2.98 5.81 -105.06 -0.61 -3.59 15 18 C 0.33 6.34 11.19 34.35 0.38 6.73 15 19 O -0.35 -8.32 11.64 -18.50 -0.22 -8.54 15 20 H 0.26 7.11 8.31 -40.82 -0.34 6.77 15 21 H 0.32 7.50 8.98 -39.29 -0.35 7.15 15 22 H 0.36 9.79 7.52 -39.30 -0.30 9.49 15 23 H 0.35 8.42 9.03 45.56 0.41 8.84 15 24 H 0.14 2.86 5.25 -52.49 -0.28 2.59 15 25 H 0.11 1.50 8.06 -52.49 -0.42 1.08 15 26 H 0.11 1.30 8.06 -52.48 -0.42 0.88 15 27 H 0.12 1.41 8.06 -52.49 -0.42 0.99 15 28 H 0.07 1.03 8.06 -52.48 -0.42 0.60 15 LS Contribution 241.19 15.07 3.63 3.63 Total: -1.00 -30.53 241.19 -5.91 -36.43 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -1.60 Total: 21.52 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -2.71 Total: -10.16 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 0.59 Total: -43.86 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.80 Total: -23.14 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -30.53 -5.91 -36.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.006 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds