Wall clock time and date at job start Mon Mar 30 2020 03:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99848 * 2 1 4 4 H 1.48497 * 109.47031 * 269.99611 * 3 2 1 5 5 H 1.48499 * 109.47022 * 29.99974 * 3 2 1 6 6 H 1.48504 * 109.46834 * 149.99790 * 3 2 1 7 7 C 1.37876 * 120.00077 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00551 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00008 * 0.02562 * 7 2 1 10 10 N 1.46906 * 109.47214 * 294.52199 * 9 7 2 11 11 O 1.42900 * 109.47189 * 54.51661 * 9 7 2 12 12 C 1.50696 * 109.47239 * 174.51940 * 9 7 2 13 13 C 1.37906 * 120.08762 * 359.57681 * 12 9 7 14 14 C 1.38382 * 120.17300 * 179.97438 * 13 12 9 15 15 C 1.38427 * 120.34913 * 0.02562 * 14 13 12 16 16 C 1.37865 * 120.17384 * 0.02562 * 15 14 13 17 17 C 1.39836 * 120.08864 * 179.29693 * 12 9 7 18 18 C 1.47165 * 120.17160 * 0.02845 * 17 12 9 19 19 O 1.21255 * 119.99954 * 359.97438 * 18 17 12 20 20 H 0.96999 * 120.00101 * 0.02562 * 1 2 3 21 21 H 1.00898 * 110.99680 * 299.99631 * 10 9 7 22 22 H 1.00894 * 110.99766 * 63.95451 * 10 9 7 23 23 H 0.96706 * 113.99697 * 60.00201 * 11 9 7 24 24 H 1.07994 * 119.91373 * 0.02562 * 13 12 9 25 25 H 1.07999 * 119.83081 * 179.97438 * 14 13 12 26 26 H 1.08005 * 119.91518 * 180.02562 * 15 14 13 27 27 H 1.08002 * 120.09029 * 179.97438 * 16 15 14 28 28 H 1.08003 * 119.99948 * 179.97438 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 0.5079 -2.6356 1.2604 11 8 0.3361 -2.5209 -1.0969 12 6 2.2248 -3.6414 -0.1345 13 6 3.5762 -3.3887 -0.2431 14 6 4.4719 -4.4362 -0.3667 15 6 4.0201 -5.7446 -0.3829 16 6 2.6721 -6.0136 -0.2764 17 6 1.7610 -4.9605 -0.1442 18 6 0.3210 -5.2392 -0.0233 19 8 -0.4666 -4.3237 0.0855 20 1 -0.4850 0.8400 -0.0004 21 1 1.1332 -2.6230 2.0522 22 1 -0.1963 -1.9179 1.3443 23 1 0.7582 -2.4352 -1.9627 24 1 3.9364 -2.3706 -0.2308 25 1 5.5290 -4.2320 -0.4517 26 1 4.7254 -6.5568 -0.4792 27 1 2.3211 -7.0349 -0.2897 28 1 -0.0342 -6.2591 -0.0316 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238619931.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:22 Heat of formation + Delta-G solvation = -45.992993 kcal Electronic energy + Delta-G solvation = -15307.594371 eV Core-core repulsion = 12710.132100 eV Total energy + Delta-G solvation = -2597.462272 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.74651 -38.51147 -37.54634 -34.30393 -32.93978 -32.09367 -31.04040 -27.70800 -25.48807 -24.04011 -22.33867 -20.92652 -18.84935 -17.98138 -17.30991 -16.59288 -16.31587 -15.62508 -15.38959 -14.94017 -14.74896 -14.63638 -14.51720 -14.30957 -13.50625 -13.02644 -12.94317 -12.78496 -12.49050 -12.07848 -11.86829 -11.50898 -10.86052 -10.25819 -9.98875 -9.64598 -9.54005 -8.88847 -8.00729 -6.37497 0.09402 0.65823 1.35409 1.37245 1.45952 2.04879 2.35558 3.09798 3.20489 3.71675 3.80776 4.21151 4.22434 4.38588 4.58501 4.74924 4.96137 5.16840 5.27207 5.41621 5.59105 5.61431 5.75686 5.83735 6.10537 6.25928 6.66239 6.69812 7.05502 7.21699 7.36394 7.88906 8.88512 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.033522 B = 0.011855 C = 0.009288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.073355 B = 2361.300557 C = 3013.828576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.036 3.964 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.615 4.615 8 H 0.068 0.932 9 C 0.451 3.549 10 N -0.810 5.810 11 O -0.547 6.547 12 C -0.067 4.067 13 C -0.143 4.143 14 C -0.106 4.106 15 C -0.137 4.137 16 C -0.082 4.082 17 C -0.180 4.180 18 C 0.337 3.663 19 O -0.412 6.412 20 H 0.259 0.741 21 H 0.317 0.683 22 H 0.337 0.663 23 H 0.347 0.653 24 H 0.121 0.879 25 H 0.144 0.856 26 H 0.159 0.841 27 H 0.163 0.837 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 -11.162 -0.754 13.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.168 4.168 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.655 4.655 8 H 0.086 0.914 9 C 0.321 3.679 10 N -0.340 5.340 11 O -0.348 6.348 12 C -0.069 4.069 13 C -0.161 4.161 14 C -0.124 4.124 15 C -0.155 4.155 16 C -0.100 4.100 17 C -0.181 4.181 18 C 0.191 3.809 19 O -0.280 6.280 20 H 0.068 0.932 21 H 0.127 0.873 22 H 0.151 0.849 23 H 0.189 0.811 24 H 0.139 0.861 25 H 0.162 0.838 26 H 0.177 0.823 27 H 0.180 0.820 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.857 -11.324 -0.490 13.247 hybrid contribution 1.116 2.400 -0.204 2.655 sum 7.973 -8.924 -0.693 11.987 Atomic orbital electron populations 1.70150 1.07082 1.26894 1.47953 1.25790 0.95382 1.02180 0.93463 0.85687 0.78777 0.79697 0.78074 1.20315 1.21290 1.19242 1.22937 0.94237 0.93449 1.54831 0.91408 1.17382 0.81576 0.86689 0.82207 1.58844 1.17330 1.55507 1.02360 1.86493 1.37253 1.95998 1.15103 1.21253 0.95286 0.95399 0.94929 1.21570 0.93122 1.00410 1.01030 1.21670 1.00161 0.92896 0.97692 1.21460 0.96027 0.96905 1.01059 1.21715 0.92920 0.99029 0.96326 1.21277 0.98009 0.93481 1.05372 1.24419 0.87629 0.94735 0.74120 1.90762 1.57484 1.50026 1.29736 0.93207 0.87302 0.84939 0.81050 0.86105 0.83841 0.82311 0.81980 0.85774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -51.85 11.23 21.45 0.24 -51.61 15 2 C 0.04 1.96 5.31 84.65 0.45 2.41 15 3 Si 0.95 43.33 29.54 68.60 2.03 45.35 15 4 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 5 H -0.29 -13.03 7.11 99.48 0.71 -12.32 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 7 C -0.62 -33.14 7.99 25.60 0.20 -32.94 15 8 H 0.07 3.53 4.96 -2.91 -0.01 3.51 15 9 C 0.45 23.19 0.59 43.42 0.03 23.21 15 10 N -0.81 -42.16 6.31 -269.99 -1.70 -43.87 15 11 O -0.55 -30.28 9.82 -125.96 -1.24 -31.51 15 12 C -0.07 -2.89 5.15 -19.56 -0.10 -2.99 15 13 C -0.14 -5.49 9.14 22.23 0.20 -5.29 15 14 C -0.11 -3.03 10.04 22.35 0.22 -2.81 15 15 C -0.14 -3.25 10.03 22.23 0.22 -3.03 15 16 C -0.08 -2.12 9.80 22.58 0.22 -1.90 15 17 C -0.18 -6.49 5.81 -20.15 -0.12 -6.60 15 18 C 0.34 12.31 11.19 70.17 0.78 13.10 15 19 O -0.41 -19.86 11.64 20.07 0.23 -19.63 15 20 H 0.26 14.59 8.31 -92.71 -0.77 13.82 15 21 H 0.32 15.67 8.98 -89.70 -0.81 14.86 15 22 H 0.34 19.50 7.52 -89.70 -0.67 18.83 15 23 H 0.35 17.83 9.03 -74.05 -0.67 17.16 15 24 H 0.12 4.99 5.25 -2.91 -0.02 4.97 15 25 H 0.14 3.17 8.06 -2.91 -0.02 3.15 15 26 H 0.16 2.44 8.06 -2.91 -0.02 2.42 15 27 H 0.16 2.76 8.06 -2.91 -0.02 2.73 15 28 H 0.13 3.14 8.06 -2.91 -0.02 3.11 15 Total: -1.00 -69.39 241.19 0.76 -68.64 By element: Atomic # 1 Polarization: 50.38 SS G_CDS: -0.92 Total: 49.46 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 2.12 Total: -16.83 kcal Atomic # 7 Polarization: -94.02 SS G_CDS: -1.46 Total: -95.48 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -1.00 Total: -51.14 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Total: -69.39 0.76 -68.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238619931.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.643 kcal (2) G-P(sol) polarization free energy of solvation -69.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds