Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86805 * 119.99451 * 2 1 4 4 H 1.48500 * 109.46608 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47021 * 300.00346 * 3 2 1 6 6 H 1.48496 * 109.47297 * 60.00737 * 3 2 1 7 7 C 1.39928 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99468 * 163.98326 * 7 2 1 9 9 C 1.41037 * 119.99869 * 343.97589 * 7 2 1 10 10 C 1.40729 * 120.31340 * 333.69763 * 9 7 2 11 11 C 1.36442 * 119.95583 * 179.70023 * 10 9 7 12 12 C 1.38900 * 120.59480 * 0.55442 * 11 10 9 13 13 C 1.50701 * 119.69048 * 179.71570 * 12 11 10 14 14 C 1.50699 * 109.47214 * 269.73245 * 13 12 11 15 15 O 1.20818 * 119.99898 * 359.97438 * 14 13 12 16 16 O 1.34228 * 120.00069 * 179.72522 * 14 13 12 17 17 C 1.38163 * 120.62665 * 359.44064 * 12 11 10 18 18 C 1.38753 * 120.02674 * 0.27588 * 17 12 11 19 19 N 1.38729 * 120.29599 * 179.97438 * 18 17 12 20 20 H 0.96998 * 120.00318 * 359.97438 * 1 2 3 21 21 H 1.08006 * 120.02370 * 359.97438 * 10 9 7 22 22 H 1.07995 * 119.70462 * 180.27133 * 11 10 9 23 23 H 1.09000 * 109.47560 * 149.72569 * 13 12 11 24 24 H 1.09005 * 109.46696 * 29.73124 * 13 12 11 25 25 H 0.96697 * 116.99970 * 180.27626 * 16 14 13 26 26 H 1.08003 * 119.98501 * 180.29608 * 17 12 11 27 27 H 0.96998 * 120.00323 * 0.02562 * 19 18 17 28 28 H 0.97000 * 119.99763 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8838 2.3965 -1.2125 6 1 1.8841 2.3965 1.2125 7 6 2.0085 -1.2118 -0.0005 8 1 3.0570 -1.2297 -0.2586 9 6 1.3444 -2.4096 0.3361 10 6 0.2138 -2.3837 1.1736 11 6 -0.4268 -3.5463 1.4897 12 6 0.0333 -4.7623 1.0010 13 6 -0.6860 -6.0347 1.3682 14 6 -0.0868 -6.6049 2.6279 15 8 0.8306 -6.0367 3.1714 16 8 -0.5755 -7.7413 3.1488 17 6 1.1409 -4.8160 0.1768 18 6 1.8087 -3.6490 -0.1658 19 7 2.9217 -3.6965 -0.9925 20 1 -0.4850 0.8400 0.0004 21 1 -0.1494 -1.4438 1.5624 22 1 -1.2967 -3.5212 2.1292 23 1 -0.5839 -6.7567 0.5580 24 1 -1.7420 -5.8204 1.5329 25 1 -0.1613 -8.0661 3.9600 26 1 1.4869 -5.7668 -0.2011 27 1 3.2362 -4.5481 -1.3341 28 1 3.3850 -2.8779 -1.2296 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238657889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = -102.749719 kcal Electronic energy + Delta-G solvation = -14429.183124 eV Core-core repulsion = 11829.259696 eV Total energy + Delta-G solvation = -2599.923428 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.13463 -39.58973 -36.97348 -35.67449 -35.12966 -32.56513 -29.80122 -29.27140 -26.18781 -23.27894 -22.48188 -21.22505 -19.05589 -18.90651 -17.65894 -17.34669 -16.96330 -16.59409 -16.33719 -15.75912 -14.61636 -14.30273 -14.14857 -14.03652 -13.49685 -13.18790 -13.01022 -12.68556 -12.56473 -12.35020 -12.13932 -11.51207 -11.43216 -11.34717 -10.97114 -10.87867 -9.15777 -8.56724 -8.07190 -6.03736 0.95951 1.38322 1.39973 1.41084 1.48783 1.53656 2.25285 2.40572 2.90731 3.61350 3.87629 4.10942 4.40203 4.62323 4.74553 4.79949 4.88487 5.18526 5.35726 5.47295 5.73452 5.75580 5.85807 6.05719 6.30112 6.41393 6.69511 6.95430 7.02798 7.18450 7.31504 7.55111 8.48141 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.046376 B = 0.007325 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.620433 B = 3821.711102 C = 4105.870406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.031 3.969 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.493 4.493 8 H 0.074 0.926 9 C 0.028 3.972 10 C -0.163 4.163 11 C -0.144 4.144 12 C -0.151 4.151 13 C -0.047 4.047 14 C 0.480 3.520 15 O -0.550 6.550 16 O -0.513 6.513 17 C -0.172 4.172 18 C 0.107 3.893 19 N -0.873 5.873 20 H 0.282 0.718 21 H 0.095 0.905 22 H 0.098 0.902 23 H 0.127 0.873 24 H 0.122 0.878 25 H 0.422 0.578 26 H 0.115 0.885 27 H 0.394 0.606 28 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -8.816 0.962 8.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.181 4.181 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.525 4.525 8 H 0.092 0.908 9 C 0.023 3.977 10 C -0.184 4.184 11 C -0.163 4.163 12 C -0.153 4.153 13 C -0.084 4.084 14 C 0.324 3.676 15 O -0.440 6.440 16 O -0.327 6.327 17 C -0.196 4.196 18 C 0.005 3.995 19 N -0.416 5.416 20 H 0.092 0.908 21 H 0.113 0.887 22 H 0.116 0.884 23 H 0.145 0.855 24 H 0.140 0.860 25 H 0.283 0.717 26 H 0.133 0.867 27 H 0.222 0.778 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -0.768 -8.368 0.777 8.439 hybrid contribution 0.825 0.808 0.425 1.230 sum 0.057 -7.560 1.202 7.655 Atomic orbital electron populations 1.69919 1.08760 1.29670 1.38147 1.26595 0.95451 1.04016 0.92051 0.85244 0.79425 0.77015 0.78465 1.18256 1.19381 1.19691 1.19437 0.97182 0.92076 1.43761 0.90761 1.17616 0.94655 0.91830 0.93610 1.20737 0.99575 0.96925 1.01177 1.20310 1.00671 0.92902 1.02464 1.18688 0.99301 0.92900 1.04366 1.20096 1.00828 0.95029 0.92485 1.24034 0.79937 0.77433 0.86159 1.90729 1.30355 1.60774 1.62131 1.84512 1.62468 1.39914 1.45782 1.20133 0.98915 0.95489 1.05077 1.18128 0.91845 0.93856 0.95707 1.41749 1.32271 1.10612 1.56936 0.90814 0.88731 0.88390 0.85492 0.85984 0.71737 0.86735 0.77817 0.77885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.35 10.97 21.83 0.24 -45.11 15 2 C 0.03 1.62 5.16 85.24 0.44 2.06 15 3 Si 0.98 39.63 29.59 68.60 2.03 41.66 15 4 H -0.26 -10.20 7.11 99.48 0.71 -9.49 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 15 6 H -0.27 -10.82 7.11 99.48 0.71 -10.12 15 7 C -0.49 -26.76 8.49 23.37 0.20 -26.56 15 8 H 0.07 3.81 6.72 -2.91 -0.02 3.79 15 9 C 0.03 1.52 5.57 -21.17 -0.12 1.40 15 10 C -0.16 -8.98 8.62 22.46 0.19 -8.78 15 11 C -0.14 -6.89 9.61 22.01 0.21 -6.68 15 12 C -0.15 -6.37 4.39 -19.72 -0.09 -6.46 15 13 C -0.05 -1.44 5.93 29.10 0.17 -1.26 15 14 C 0.48 15.06 8.32 71.24 0.59 15.65 15 15 O -0.55 -22.63 16.79 21.99 0.37 -22.26 15 16 O -0.51 -11.39 13.42 -51.40 -0.69 -12.08 15 17 C -0.17 -7.52 9.52 22.38 0.21 -7.30 15 18 C 0.11 5.18 6.79 38.99 0.26 5.45 15 19 N -0.87 -34.79 8.98 -50.39 -0.45 -35.24 15 20 H 0.28 13.90 8.30 -92.71 -0.77 13.13 15 21 H 0.09 5.50 6.22 -2.91 -0.02 5.48 15 22 H 0.10 4.24 8.06 -2.91 -0.02 4.22 15 23 H 0.13 3.09 8.08 -2.39 -0.02 3.07 15 24 H 0.12 3.15 8.08 -2.38 -0.02 3.13 15 25 H 0.42 5.77 9.10 -74.06 -0.67 5.09 15 26 H 0.11 4.23 8.06 -2.91 -0.02 4.21 15 27 H 0.39 12.74 8.84 -92.71 -0.82 11.92 15 28 H 0.39 15.51 7.07 -92.71 -0.66 14.85 15 Total: -1.00 -68.61 251.99 2.66 -65.95 By element: Atomic # 1 Polarization: 40.49 SS G_CDS: -0.92 Total: 39.57 kcal Atomic # 6 Polarization: -34.58 SS G_CDS: 2.08 Total: -32.49 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -0.21 Total: -80.35 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.32 Total: -34.33 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -68.61 2.66 -65.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238657889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.800 kcal (2) G-P(sol) polarization free energy of solvation -68.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds