Wall clock time and date at job start Mon Mar 30 2020 02:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48502 * 109.46731 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47078 * 299.99882 * 3 2 1 6 6 H 1.48496 * 109.47419 * 60.00108 * 3 2 1 7 7 C 1.39696 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.40886 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.38922 * 126.91980 * 359.97041 * 9 7 2 11 11 N 1.35645 * 109.29386 * 180.02562 * 10 9 7 12 12 H 0.97001 * 124.70252 * 179.97438 * 11 10 9 13 13 C 1.38263 * 110.58806 * 0.23913 * 11 10 9 14 14 C 1.40363 * 107.89502 * 359.62000 * 13 11 10 15 15 C 1.39236 * 120.25045 * 180.17359 * 14 13 11 16 16 C 1.37850 * 119.80382 * 0.24832 * 15 14 13 17 17 C 1.39044 * 120.21964 * 359.97438 * 16 15 14 18 18 O 1.35957 * 119.76208 * 180.02562 * 17 16 15 19 19 C 1.38596 * 120.47659 * 359.97438 * 17 16 15 20 20 F 1.35109 * 120.05436 * 180.02562 * 19 17 16 21 21 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.35356 * 0.04560 * 10 9 7 23 23 H 1.08000 * 120.09990 * 180.26901 * 15 14 13 24 24 H 1.07997 * 119.89028 * 180.02562 * 16 15 14 25 25 H 0.96701 * 113.99848 * 89.99763 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6179 0.0000 4 1 3.7047 1.3465 0.0006 5 1 1.8859 2.3965 -1.2125 6 1 1.8860 2.3965 1.2125 7 6 2.0094 -1.2098 0.0005 8 1 3.0894 -1.2097 0.0010 9 6 1.3050 -2.4299 0.0005 10 6 -0.0741 -2.5973 0.0006 11 7 -0.3647 -3.9223 0.0012 12 1 -1.2620 -4.2908 0.0017 13 6 0.7954 -4.6745 0.0069 14 6 1.8840 -3.7884 0.0013 15 6 3.1873 -4.2784 0.0016 16 6 3.4076 -5.6392 0.0023 17 6 2.3335 -6.5221 0.0031 18 8 2.5615 -7.8624 0.0043 19 6 1.0320 -6.0457 0.0039 20 9 -0.0054 -6.9112 0.0052 21 1 -0.4850 0.8400 -0.0004 22 1 -0.8006 -1.7982 0.0000 23 1 4.0231 -3.5945 0.0017 24 1 4.4179 -6.0208 0.0029 25 1 2.6276 -8.2493 0.8880 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238666954.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:49 Heat of formation + Delta-G solvation = -44.388779 kcal Electronic energy + Delta-G solvation = -14258.455243 eV Core-core repulsion = 11537.602230 eV Total energy + Delta-G solvation = -2720.853013 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.13234 -39.77378 -37.69072 -34.58389 -33.62745 -30.24853 -28.49305 -27.22575 -24.96323 -21.98908 -21.09638 -19.69885 -18.01175 -17.28770 -16.35538 -15.94424 -15.32752 -14.82075 -14.58279 -13.99899 -13.88373 -13.08966 -12.85168 -12.67005 -12.10750 -11.48643 -11.28231 -11.24607 -10.80918 -10.38597 -10.13335 -9.96977 -9.86258 -9.52675 -8.32322 -7.24806 -6.74418 -6.61098 -4.12383 1.79272 2.25100 3.02453 3.12886 3.17935 3.98972 4.00797 4.18118 4.44522 4.85343 5.06457 5.45495 5.68155 5.84553 6.10820 6.39919 6.49661 6.81719 7.00041 7.08700 7.27328 7.33486 7.64644 7.77148 8.04165 8.20658 8.49589 8.85099 8.99939 9.03809 10.36800 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.050884 B = 0.008107 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.136835 B = 3453.112720 C = 3990.847966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.055 3.945 3 Si 0.920 3.080 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.414 4.414 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.085 4.085 11 N -0.577 5.577 12 H 0.399 0.601 13 C 0.060 3.940 14 C -0.115 4.115 15 C -0.045 4.045 16 C -0.191 4.191 17 C 0.070 3.930 18 O -0.494 6.494 19 C 0.034 3.966 20 F -0.154 7.154 21 H 0.275 0.725 22 H 0.197 0.803 23 H 0.121 0.879 24 H 0.121 0.879 25 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.985 -5.090 1.625 5.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.155 4.155 3 Si 0.746 3.254 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.447 4.447 8 H 0.093 0.907 9 C 0.015 3.985 10 C -0.210 4.210 11 N -0.177 5.177 12 H 0.233 0.767 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.064 4.064 16 C -0.212 4.212 17 C 0.024 3.976 18 O -0.303 6.303 19 C 0.011 3.989 20 F -0.133 7.133 21 H 0.086 0.914 22 H 0.214 0.786 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.619 -4.782 1.002 5.148 hybrid contribution -0.306 0.291 0.509 0.661 sum 1.314 -4.491 1.510 4.917 Atomic orbital electron populations 1.69425 1.07269 1.28098 1.41382 1.25675 0.94866 1.00882 0.94101 0.86048 0.80344 0.80855 0.78174 1.18770 1.20268 1.20281 1.18767 0.94131 0.88897 1.42887 0.90686 1.18109 0.90585 0.89099 1.00706 1.23525 0.98327 0.81636 1.17499 1.41576 1.05158 1.06642 1.64293 0.76745 1.17970 0.88957 0.89767 1.08574 1.19362 0.91093 0.94340 1.07444 1.20325 0.95606 0.93744 0.96756 1.20610 0.97302 0.92591 1.10690 1.17758 0.89746 0.82938 1.07164 1.84847 1.94070 1.18619 1.32715 1.16997 0.83601 0.83894 1.14426 1.91351 1.57347 1.69640 1.94981 0.91409 0.78650 0.86064 0.86060 0.76883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.86 10.33 55.54 0.57 -20.29 15 2 C 0.06 1.36 5.49 -17.33 -0.10 1.27 15 3 Si 0.92 18.79 29.56 -169.99 -5.02 13.77 15 4 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.21 15 6 H -0.28 -5.61 7.11 56.52 0.40 -5.20 15 7 C -0.41 -10.77 9.42 -38.04 -0.36 -11.13 15 8 H 0.07 1.86 7.84 -52.49 -0.41 1.45 15 9 C 0.02 0.52 6.10 -104.79 -0.64 -0.12 15 10 C -0.09 -2.11 10.88 -15.61 -0.17 -2.28 15 11 N -0.58 -12.73 6.00 -9.76 -0.06 -12.79 15 12 H 0.40 7.45 8.96 -40.82 -0.37 7.08 15 13 C 0.06 1.38 7.21 -83.83 -0.60 0.78 15 14 C -0.11 -2.74 6.33 -104.87 -0.66 -3.40 15 15 C -0.05 -0.94 10.08 -39.35 -0.40 -1.33 15 16 C -0.19 -3.55 9.97 -39.42 -0.39 -3.94 15 17 C 0.07 1.36 6.70 -39.15 -0.26 1.09 15 18 O -0.49 -8.29 13.34 -19.61 -0.26 -8.55 15 19 C 0.03 0.72 7.33 -39.11 -0.29 0.43 15 20 F -0.15 -3.15 17.10 2.25 0.04 -3.11 15 21 H 0.27 6.34 8.30 -40.82 -0.34 6.00 15 22 H 0.20 4.94 5.67 -52.49 -0.30 4.65 15 23 H 0.12 2.27 8.06 -52.49 -0.42 1.85 15 24 H 0.12 1.90 8.06 -52.49 -0.42 1.47 15 25 H 0.38 4.36 9.06 45.56 0.41 4.78 15 LS Contribution 233.12 15.07 3.51 3.51 Total: -1.00 -28.40 233.12 -5.73 -34.13 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -0.64 Total: 11.95 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: -3.87 Total: -18.63 kcal Atomic # 7 Polarization: -33.59 SS G_CDS: 0.52 Total: -33.08 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: -0.26 Total: -8.55 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.04 Total: -3.11 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.02 Total: 13.77 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -28.40 -5.73 -34.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666954.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.259 kcal (2) G-P(sol) polarization free energy of solvation -28.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds