Wall clock time and date at job start Mon Mar 30 2020 02:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31083 * 1 3 3 Si 1.86804 * 119.99506 * 2 1 4 4 H 1.48502 * 109.46731 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47078 * 299.99882 * 3 2 1 6 6 H 1.48496 * 109.47419 * 60.00108 * 3 2 1 7 7 C 1.39696 * 120.00424 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99940 * 180.02562 * 7 2 1 9 9 C 1.40886 * 119.99813 * 0.02562 * 7 2 1 10 10 C 1.38922 * 126.91980 * 359.97041 * 9 7 2 11 11 N 1.35645 * 109.29386 * 180.02562 * 10 9 7 12 12 H 0.97001 * 124.70252 * 179.97438 * 11 10 9 13 13 C 1.38263 * 110.58806 * 0.23913 * 11 10 9 14 14 C 1.40363 * 107.89502 * 359.62000 * 13 11 10 15 15 C 1.39236 * 120.25045 * 180.17359 * 14 13 11 16 16 C 1.37850 * 119.80382 * 0.24832 * 15 14 13 17 17 C 1.39044 * 120.21964 * 359.97438 * 16 15 14 18 18 O 1.35957 * 119.76208 * 180.02562 * 17 16 15 19 19 C 1.38596 * 120.47659 * 359.97438 * 17 16 15 20 20 F 1.35109 * 120.05436 * 180.02562 * 19 17 16 21 21 H 0.96994 * 120.00013 * 0.02562 * 1 2 3 22 22 H 1.08000 * 125.35356 * 0.04560 * 10 9 7 23 23 H 1.08000 * 120.09990 * 180.26901 * 15 14 13 24 24 H 1.07997 * 119.89028 * 180.02562 * 16 15 14 25 25 H 0.96701 * 113.99848 * 89.99763 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2447 1.6179 0.0000 4 1 3.7047 1.3465 0.0006 5 1 1.8859 2.3965 -1.2125 6 1 1.8860 2.3965 1.2125 7 6 2.0094 -1.2098 0.0005 8 1 3.0894 -1.2097 0.0010 9 6 1.3050 -2.4299 0.0005 10 6 -0.0741 -2.5973 0.0006 11 7 -0.3647 -3.9223 0.0012 12 1 -1.2620 -4.2908 0.0017 13 6 0.7954 -4.6745 0.0069 14 6 1.8840 -3.7884 0.0013 15 6 3.1873 -4.2784 0.0016 16 6 3.4076 -5.6392 0.0023 17 6 2.3335 -6.5221 0.0031 18 8 2.5615 -7.8624 0.0043 19 6 1.0320 -6.0457 0.0039 20 9 -0.0054 -6.9112 0.0052 21 1 -0.4850 0.8400 -0.0004 22 1 -0.8006 -1.7982 0.0000 23 1 4.0231 -3.5945 0.0017 24 1 4.4179 -6.0208 0.0029 25 1 2.6276 -8.2493 0.8880 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238666954.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:48 Heat of formation + Delta-G solvation = -63.275195 kcal Electronic energy + Delta-G solvation = -14259.274219 eV Core-core repulsion = 11537.602230 eV Total energy + Delta-G solvation = -2721.671989 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.73964 -41.47526 -39.18281 -36.16434 -35.44615 -32.00649 -30.15783 -28.92549 -26.79138 -23.62826 -22.72031 -21.51859 -19.61575 -18.86095 -18.04327 -17.76353 -16.89644 -16.50754 -16.14468 -15.62256 -15.45051 -14.66059 -14.57290 -14.42170 -13.71855 -13.13784 -13.01812 -12.92444 -12.43210 -11.97203 -11.74052 -11.66539 -11.58111 -11.31686 -10.04734 -8.92957 -8.52317 -8.43359 -6.03104 0.15144 0.65480 1.40983 1.46604 1.60427 2.19457 2.30419 2.53920 2.77637 3.31870 3.52333 3.58090 4.10781 4.25201 4.47805 4.76140 4.92722 5.22468 5.29065 5.34885 5.58759 5.73677 5.81834 6.06015 6.28745 6.66802 6.87225 7.04098 7.13093 7.22829 8.55738 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.050884 B = 0.008107 C = 0.007014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.136835 B = 3453.112720 C = 3990.847966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.013 3.987 3 Si 0.990 3.010 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.447 4.447 8 H 0.076 0.924 9 C -0.015 4.015 10 C -0.102 4.102 11 N -0.576 5.576 12 H 0.411 0.589 13 C 0.052 3.948 14 C -0.146 4.146 15 C -0.051 4.051 16 C -0.173 4.173 17 C 0.090 3.910 18 O -0.494 6.494 19 C 0.014 3.986 20 F -0.152 7.152 21 H 0.281 0.719 22 H 0.187 0.813 23 H 0.136 0.864 24 H 0.161 0.839 25 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.608 -6.020 1.753 7.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.195 4.195 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.480 4.480 8 H 0.094 0.906 9 C -0.021 4.021 10 C -0.227 4.227 11 N -0.178 5.178 12 H 0.247 0.753 13 C -0.061 4.061 14 C -0.153 4.153 15 C -0.070 4.070 16 C -0.194 4.194 17 C 0.043 3.957 18 O -0.307 6.307 19 C -0.009 4.009 20 F -0.131 7.131 21 H 0.092 0.908 22 H 0.203 0.797 23 H 0.154 0.846 24 H 0.179 0.821 25 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 3.231 -5.761 1.150 6.705 hybrid contribution -0.760 0.348 0.480 0.964 sum 2.472 -5.413 1.630 6.170 Atomic orbital electron populations 1.69506 1.08466 1.29181 1.41607 1.26539 0.95711 1.03950 0.93289 0.84993 0.79101 0.76380 0.78239 1.18233 1.19794 1.19712 1.19039 0.94386 0.89880 1.44680 0.90616 1.18525 0.91509 0.90432 1.01598 1.23333 0.98078 0.82574 1.18684 1.41433 1.05862 1.05802 1.64724 0.75328 1.18246 0.88886 0.90610 1.08317 1.19631 0.92868 0.93670 1.09152 1.20594 0.94808 0.95161 0.96391 1.20983 0.98940 0.91400 1.08029 1.17887 0.89053 0.84257 1.04454 1.84776 1.93746 1.16961 1.35172 1.17173 0.84590 0.83312 1.15808 1.91350 1.57421 1.69270 1.95096 0.90847 0.79716 0.84569 0.82120 0.73553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.08 10.33 21.79 0.23 -43.85 15 2 C 0.01 0.64 5.49 85.16 0.47 1.11 15 3 Si 0.99 38.62 29.56 68.60 2.03 40.65 15 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 15 5 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 6 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 7 C -0.45 -23.82 9.42 23.27 0.22 -23.60 15 8 H 0.08 3.83 7.84 -2.91 -0.02 3.81 15 9 C -0.02 -0.83 6.10 -19.97 -0.12 -0.95 15 10 C -0.10 -5.24 10.88 84.27 0.92 -4.33 15 11 N -0.58 -26.04 6.00 -184.81 -1.11 -27.15 15 12 H 0.41 15.73 8.96 -92.71 -0.83 14.90 15 13 C 0.05 2.38 7.21 38.86 0.28 2.66 15 14 C -0.15 -6.98 6.33 -20.03 -0.13 -7.11 15 15 C -0.05 -2.01 10.08 22.42 0.23 -1.78 15 16 C -0.17 -5.79 9.97 22.37 0.22 -5.57 15 17 C 0.09 3.19 6.70 22.55 0.15 3.34 15 18 O -0.49 -14.42 13.34 -93.07 -1.24 -15.66 15 19 C 0.01 0.59 7.33 22.57 0.17 0.75 15 20 F -0.15 -5.98 17.10 44.97 0.77 -5.21 15 21 H 0.28 13.18 8.30 -92.71 -0.77 12.42 15 22 H 0.19 9.83 5.67 -2.91 -0.02 9.81 15 23 H 0.14 4.87 8.06 -2.91 -0.02 4.85 15 24 H 0.16 4.14 8.06 -2.91 -0.02 4.12 15 25 H 0.41 7.43 9.06 -74.06 -0.67 6.76 15 Total: -1.00 -61.13 233.12 2.84 -58.30 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.24 Total: 28.40 kcal Atomic # 6 Polarization: -37.88 SS G_CDS: 2.40 Total: -35.48 kcal Atomic # 7 Polarization: -70.12 SS G_CDS: -0.88 Total: -71.00 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -1.24 Total: -15.66 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.77 Total: -5.21 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 2.03 Total: 40.65 kcal Total: -61.13 2.84 -58.30 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666954.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.979 kcal (2) G-P(sol) polarization free energy of solvation -61.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds