Wall clock time and date at job start Mon Mar 30 2020 02:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31075 * 1 3 3 Si 1.86799 * 120.00507 * 2 1 4 4 H 1.48500 * 109.46984 * 270.00049 * 3 2 1 5 5 H 1.48497 * 109.46771 * 29.99916 * 3 2 1 6 6 H 1.48503 * 109.46921 * 150.00217 * 3 2 1 7 7 C 1.39696 * 119.99500 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99581 * 179.97438 * 7 2 1 9 9 C 1.40884 * 120.00007 * 0.02562 * 7 2 1 10 10 C 1.38952 * 126.93472 * 0.09783 * 9 7 2 11 11 N 1.35687 * 109.24668 * 180.25757 * 10 9 7 12 12 H 0.97006 * 124.69895 * 179.80323 * 11 10 9 13 13 C 1.38146 * 110.60681 * 359.77776 * 11 10 9 14 14 C 1.39146 * 132.73350 * 179.97438 * 13 11 10 15 15 C 1.38155 * 120.07062 * 180.02562 * 14 13 11 16 16 F 1.35100 * 119.68765 * 180.02562 * 15 14 13 17 17 C 1.38768 * 120.62467 * 0.02562 * 15 14 13 18 18 C 1.38414 * 120.15733 * 359.97278 * 17 15 14 19 19 O 1.35824 * 120.19335 * 180.02562 * 18 17 15 20 20 C 1.39675 * 119.62005 * 0.02570 * 18 17 15 21 21 H 0.97008 * 119.99655 * 0.02562 * 1 2 3 22 22 H 1.08001 * 125.37330 * 0.07536 * 10 9 7 23 23 H 1.08001 * 119.97179 * 0.04073 * 14 13 11 24 24 H 1.08001 * 119.91972 * 179.97438 * 17 15 14 25 25 H 0.96696 * 114.00182 * 270.02906 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3107 0.0000 0.0000 3 14 2.2449 1.6176 0.0000 4 1 2.4924 2.0463 -1.4001 5 1 1.4424 2.6526 0.7000 6 1 3.5425 1.4399 0.7000 7 6 2.0091 -1.2099 -0.0005 8 1 3.0891 -1.2099 -0.0010 9 6 1.3046 -2.4299 -0.0016 10 6 -0.0748 -2.5975 -0.0042 11 7 -0.3642 -3.9232 0.0013 12 1 -1.2612 -4.2925 0.0036 13 6 0.7954 -4.6740 0.0026 14 6 1.0324 -6.0451 0.0079 15 6 2.3285 -6.5236 0.0084 16 9 2.5497 -7.8563 0.0131 17 6 3.4052 -5.6481 0.0040 18 6 3.1897 -4.2809 -0.0014 19 8 4.2430 -3.4234 -0.0062 20 6 1.8828 -3.7880 -0.0019 21 1 -0.4850 0.8401 -0.0004 22 1 -0.8017 -1.7988 -0.0068 23 1 0.2024 -6.7362 0.0115 24 1 4.4137 -6.0346 0.0048 25 1 4.5493 -3.1718 0.8758 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238698708.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:34 Heat of formation + Delta-G solvation = -43.126792 kcal Electronic energy + Delta-G solvation = -14313.277715 eV Core-core repulsion = 11592.479427 eV Total energy + Delta-G solvation = -2720.798289 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.24783 -39.88394 -37.18599 -34.74457 -33.42636 -30.17249 -28.50554 -27.31389 -24.79923 -22.05473 -20.92972 -19.64784 -18.32398 -16.59948 -16.00926 -15.77099 -15.41236 -14.95937 -14.57446 -14.37443 -13.67735 -13.18809 -12.86527 -12.65551 -12.25997 -11.29371 -11.24083 -11.07239 -10.80515 -10.34500 -10.15841 -9.93829 -9.52964 -9.47252 -8.34809 -7.28751 -6.66744 -6.57304 -4.07690 1.83218 2.26005 3.06523 3.15001 3.19456 4.03409 4.08017 4.24971 4.41574 4.90535 5.28670 5.49640 5.65444 5.81603 6.11534 6.27265 6.59915 6.81009 6.92276 7.08710 7.26891 7.38169 7.73598 7.79960 8.16921 8.42424 8.57598 8.91685 9.05673 9.09436 10.40313 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.044255 B = 0.008954 C = 0.007472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.539319 B = 3126.481377 C = 3746.667476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.053 3.947 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.409 4.409 8 H 0.081 0.919 9 C 0.031 3.969 10 C -0.101 4.101 11 N -0.578 5.578 12 H 0.397 0.603 13 C 0.113 3.887 14 C -0.194 4.194 15 C 0.110 3.890 16 F -0.153 7.153 17 C -0.253 4.253 18 C 0.194 3.806 19 O -0.491 6.491 20 C -0.163 4.163 21 H 0.274 0.726 22 H 0.196 0.804 23 H 0.116 0.884 24 H 0.123 0.877 25 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.185 -4.590 1.654 5.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.157 4.157 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.441 4.441 8 H 0.099 0.901 9 C 0.026 3.974 10 C -0.225 4.225 11 N -0.178 5.178 12 H 0.231 0.769 13 C -0.001 4.001 14 C -0.217 4.217 15 C 0.090 3.910 16 F -0.132 7.132 17 C -0.275 4.275 18 C 0.149 3.851 19 O -0.301 6.301 20 C -0.170 4.170 21 H 0.085 0.915 22 H 0.212 0.788 23 H 0.134 0.866 24 H 0.141 0.859 25 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 0.830 -4.387 1.048 4.586 hybrid contribution -0.005 0.339 0.454 0.566 sum 0.825 -4.048 1.502 4.396 Atomic orbital electron populations 1.69442 1.07279 1.28069 1.41394 1.25712 0.94854 1.00919 0.94228 0.86099 0.79922 0.80500 0.78868 1.19880 1.20677 1.18922 1.18892 0.94519 0.88773 1.41964 0.90126 1.18050 0.90452 0.88960 0.99974 1.23463 0.98220 0.81686 1.19176 1.41607 1.05129 1.06751 1.64289 0.76874 1.17551 0.87338 0.90750 1.04478 1.19549 0.95098 0.92893 1.14151 1.16663 0.92929 0.76182 1.05211 1.91396 1.95667 1.31594 1.94540 1.20614 0.97974 0.92377 1.16533 1.17466 0.85082 0.86862 0.95690 1.84713 1.47882 1.64582 1.32884 1.19740 0.91070 0.95701 1.10510 0.91485 0.78814 0.86605 0.85859 0.75898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.03 10.33 55.54 0.57 -20.45 15 2 C 0.05 1.33 5.49 -17.33 -0.10 1.24 15 3 Si 0.92 19.15 29.56 -169.99 -5.02 14.13 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 15 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 7 C -0.41 -10.80 9.26 -38.04 -0.35 -11.15 15 8 H 0.08 2.07 6.94 -52.49 -0.36 1.70 15 9 C 0.03 0.80 6.10 -104.81 -0.64 0.16 15 10 C -0.10 -2.49 10.89 -15.58 -0.17 -2.66 15 11 N -0.58 -12.17 5.99 -9.80 -0.06 -12.23 15 12 H 0.40 6.73 8.96 -40.82 -0.37 6.37 15 13 C 0.11 2.48 7.23 -83.92 -0.61 1.87 15 14 C -0.19 -3.79 10.04 -39.27 -0.39 -4.18 15 15 C 0.11 2.15 7.28 -39.42 -0.29 1.86 15 16 F -0.15 -2.79 17.25 2.25 0.04 -2.75 15 17 C -0.25 -4.97 9.96 -39.32 -0.39 -5.37 15 18 C 0.19 4.21 6.73 -38.98 -0.26 3.95 15 19 O -0.49 -9.81 12.46 -19.19 -0.24 -10.05 15 20 C -0.16 -3.92 6.29 -104.77 -0.66 -4.58 15 21 H 0.27 6.40 8.30 -40.82 -0.34 6.06 15 22 H 0.20 4.89 5.68 -52.49 -0.30 4.60 15 23 H 0.12 1.94 8.06 -52.49 -0.42 1.52 15 24 H 0.12 2.15 8.06 -52.49 -0.42 1.72 15 25 H 0.39 5.88 9.06 45.56 0.41 6.29 15 LS Contribution 231.24 15.07 3.48 3.48 Total: -1.00 -28.46 231.24 -5.68 -34.13 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -0.60 Total: 12.60 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -3.86 Total: -18.86 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.51 Total: -32.68 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.24 Total: -10.05 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -28.46 -5.68 -34.13 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238698708.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.992 kcal (2) G-P(sol) polarization free energy of solvation -28.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds