Wall clock time and date at job start Mon Mar 30 2020 02:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30800 * 1 3 3 Si 1.86807 * 120.00098 * 2 1 4 4 H 1.48499 * 109.47239 * 269.99958 * 3 2 1 5 5 H 1.48504 * 109.46921 * 29.99859 * 3 2 1 6 6 H 1.48495 * 109.47100 * 149.99527 * 3 2 1 7 7 C 1.40103 * 120.00168 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00031 * 180.02562 * 7 2 1 9 9 C 1.39899 * 120.00252 * 0.02562 * 7 2 1 10 10 C 1.39180 * 125.70945 * 179.97438 * 9 7 2 11 11 C 1.40759 * 107.54488 * 179.97438 * 10 9 7 12 12 C 1.41105 * 107.34724 * 359.97438 * 11 10 9 13 13 N 1.38279 * 107.78781 * 0.02562 * 12 11 10 14 14 H 0.96996 * 125.63260 * 179.97438 * 13 12 11 15 15 C 1.38961 * 119.52129 * 179.74012 * 12 11 10 16 16 F 1.35093 * 119.93419 * 180.26999 * 15 12 11 17 17 C 1.38271 * 120.13132 * 0.53755 * 15 12 11 18 18 C 1.38736 * 120.74652 * 359.47743 * 17 15 12 19 19 C 1.38071 * 120.38853 * 0.23995 * 18 17 15 20 20 O 1.35775 * 120.20200 * 179.97438 * 19 18 17 21 21 H 0.97003 * 120.00244 * 0.02562 * 1 2 3 22 22 H 1.07997 * 126.22891 * 0.02562 * 10 9 7 23 23 H 1.08002 * 119.62803 * 179.76522 * 17 15 12 24 24 H 1.08001 * 119.80021 * 180.26172 * 18 17 15 25 25 H 0.96703 * 113.99355 * 90.00139 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.4896 2.0465 -1.4001 5 1 1.4394 2.6527 0.7000 6 1 3.5395 1.4402 0.7001 7 6 2.0085 -1.2133 0.0005 8 1 3.0885 -1.2133 0.0010 9 6 1.3091 -2.4249 0.0005 10 6 1.8818 -3.6935 0.0005 11 6 0.8331 -4.6324 0.0011 12 6 -0.3788 -3.9096 0.0021 13 7 -0.0671 -2.5624 0.0015 14 1 -0.7078 -1.8342 0.0016 15 6 -1.5862 -4.5973 -0.0026 16 9 -2.7514 -3.9137 -0.0073 17 6 -1.5975 -5.9800 0.0030 18 6 -0.4110 -6.6990 0.0025 19 6 0.8036 -6.0423 0.0014 20 8 1.9625 -6.7498 0.0014 21 1 -0.4851 0.8401 -0.0004 22 1 2.9384 -3.9168 0.0009 23 1 -2.5407 -6.5062 0.0031 24 1 -0.4377 -7.7787 0.0026 25 1 2.2977 -6.9554 -0.8821 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238718191.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:33 Heat of formation + Delta-G solvation = -76.313166 kcal Electronic energy + Delta-G solvation = -14315.628014 eV Core-core repulsion = 11593.390656 eV Total energy + Delta-G solvation = -2722.237358 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.73280 -41.60357 -38.85050 -36.59208 -35.24204 -31.74727 -30.75294 -29.08959 -27.16625 -23.14515 -22.86979 -21.26894 -19.96322 -19.16302 -18.05203 -17.52258 -16.73444 -16.66839 -16.40320 -15.60414 -15.35377 -14.58201 -14.52529 -14.11640 -13.78611 -13.23998 -13.06455 -12.99518 -12.82437 -12.38393 -12.00752 -11.95913 -11.30900 -11.28034 -10.22163 -9.22601 -9.02757 -8.35668 -6.54472 0.16077 0.81691 1.30219 1.37303 1.54345 1.98730 2.11127 2.76001 2.86731 3.19344 3.50497 3.61686 4.18399 4.27939 4.60875 4.83382 4.92523 5.08791 5.25824 5.36406 5.45185 5.65041 5.71948 5.90700 6.05323 6.46100 6.50283 6.81032 7.09841 7.35858 8.04151 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.038415 B = 0.009076 C = 0.007365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.704419 B = 3084.396073 C = 3800.709892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.030 3.970 3 Si 1.016 2.984 4 H -0.258 1.258 5 H -0.266 1.266 6 H -0.252 1.252 7 C -0.466 4.466 8 H 0.110 0.890 9 C 0.264 3.736 10 C -0.391 4.391 11 C -0.063 4.063 12 C -0.015 4.015 13 N -0.591 5.591 14 H 0.422 0.578 15 C 0.066 3.934 16 F -0.160 7.160 17 C -0.176 4.176 18 C -0.127 4.127 19 C 0.067 3.933 20 O -0.499 6.499 21 H 0.305 0.695 22 H 0.123 0.877 23 H 0.159 0.841 24 H 0.160 0.840 25 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 -3.299 -1.702 3.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.184 4.184 3 Si 0.835 3.165 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.498 4.498 8 H 0.128 0.872 9 C 0.152 3.848 10 C -0.413 4.413 11 C -0.069 4.069 12 C -0.122 4.122 13 N -0.208 5.208 14 H 0.271 0.729 15 C 0.044 3.956 16 F -0.139 7.139 17 C -0.195 4.195 18 C -0.147 4.147 19 C 0.022 3.978 20 O -0.310 6.310 21 H 0.117 0.883 22 H 0.141 0.859 23 H 0.176 0.824 24 H 0.177 0.823 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.584 -2.994 -1.090 3.240 hybrid contribution -0.250 1.152 -0.492 1.277 sum -0.834 -1.843 -1.582 2.568 Atomic orbital electron populations 1.68769 1.09484 1.32380 1.37445 1.27198 0.95658 1.05933 0.89610 0.84656 0.78629 0.73416 0.79825 1.18226 1.19031 1.17527 1.19477 0.96226 0.88825 1.45316 0.87231 1.18598 0.81057 0.94866 0.90287 1.20559 0.96943 0.90228 1.33607 1.18533 0.92459 0.93393 1.02492 1.18647 0.94280 0.86023 1.13234 1.43198 1.07819 1.04642 1.65095 0.72924 1.17085 0.77439 0.90668 1.10436 1.91355 1.47012 1.80687 1.94837 1.20581 1.00287 0.89272 1.09406 1.20937 0.89544 1.00743 1.03468 1.18062 0.86375 0.86708 1.06704 1.84691 1.38318 1.73686 1.34335 0.88313 0.85892 0.82376 0.82257 0.74780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -40.90 10.61 21.86 0.23 -40.67 15 2 C 0.03 1.38 5.50 85.30 0.47 1.84 15 3 Si 1.02 34.71 29.56 68.60 2.03 36.74 15 4 H -0.26 -8.48 7.11 99.48 0.71 -7.77 15 5 H -0.27 -8.67 7.11 99.48 0.71 -7.96 15 6 H -0.25 -8.34 7.11 99.48 0.71 -7.63 15 7 C -0.47 -23.74 9.31 23.12 0.22 -23.52 15 8 H 0.11 5.21 7.85 -2.91 -0.02 5.19 15 9 C 0.26 14.36 6.67 38.75 0.26 14.62 15 10 C -0.39 -20.52 10.86 23.11 0.25 -20.27 15 11 C -0.06 -3.13 6.09 -21.28 -0.13 -3.26 15 12 C -0.02 -0.78 7.21 39.00 0.28 -0.50 15 13 N -0.59 -31.83 5.85 -180.01 -1.05 -32.88 15 14 H 0.42 22.63 6.18 -92.71 -0.57 22.06 15 15 C 0.07 2.95 7.31 22.45 0.16 3.11 15 16 F -0.16 -7.06 17.26 44.97 0.78 -6.28 15 17 C -0.18 -6.43 9.99 22.40 0.22 -6.20 15 18 C -0.13 -4.46 9.96 22.35 0.22 -4.24 15 19 C 0.07 2.76 6.77 22.91 0.16 2.92 15 20 O -0.50 -17.96 13.50 -91.03 -1.23 -19.19 15 21 H 0.30 13.03 8.30 -92.71 -0.77 12.26 15 22 H 0.12 6.10 8.06 -2.91 -0.02 6.08 15 23 H 0.16 4.55 8.06 -2.91 -0.02 4.53 15 24 H 0.16 4.26 8.06 -2.91 -0.02 4.24 15 25 H 0.40 10.14 9.06 -74.05 -0.67 9.46 15 Total: -1.00 -60.20 233.34 2.88 -57.32 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: 0.01 Total: 40.46 kcal Atomic # 6 Polarization: -37.61 SS G_CDS: 2.11 Total: -35.50 kcal Atomic # 7 Polarization: -72.73 SS G_CDS: -0.82 Total: -73.55 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -1.23 Total: -19.19 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.78 Total: -6.28 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Total: -60.20 2.88 -57.32 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238718191.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.989 kcal (2) G-P(sol) polarization free energy of solvation -60.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds