Wall clock time and date at job start Mon Mar 30 2020 02:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31063 * 1 3 3 Si 1.86800 * 120.00237 * 2 1 4 4 H 1.48496 * 109.47415 * 240.00221 * 3 2 1 5 5 H 1.48498 * 109.46860 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46727 * 120.00240 * 3 2 1 7 7 C 1.39724 * 119.99639 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99757 * 179.97438 * 7 2 1 9 9 C 1.40888 * 120.00595 * 0.02562 * 7 2 1 10 10 C 1.38916 * 126.91018 * 0.12226 * 9 7 2 11 11 N 1.35554 * 109.29212 * 180.29522 * 10 9 7 12 12 H 0.96999 * 124.71044 * 179.71024 * 11 10 9 13 13 C 1.38380 * 110.59184 * 359.73939 * 11 10 9 14 14 C 1.40271 * 107.87143 * 0.02562 * 13 11 10 15 15 C 1.39225 * 120.22216 * 179.97438 * 14 13 11 16 16 C 1.38380 * 119.68758 * 0.02562 * 15 14 13 17 17 O 1.35973 * 119.92109 * 179.97438 * 16 15 14 18 18 C 1.39034 * 120.15440 * 359.97438 * 16 15 14 19 19 C 1.38056 * 120.54140 * 0.04370 * 18 16 15 20 20 F 1.35098 * 119.99587 * 179.97438 * 19 18 16 21 21 H 0.96996 * 119.99962 * 359.97438 * 1 2 3 22 22 H 1.07996 * 125.35719 * 0.07182 * 10 9 7 23 23 H 1.08004 * 120.15400 * 180.02562 * 15 14 13 24 24 H 0.96698 * 113.99911 * 90.00222 * 17 16 15 25 25 H 1.08001 * 119.73234 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3106 0.0000 0.0000 3 14 2.2447 1.6177 0.0000 4 1 3.0984 1.6964 -1.2125 5 1 1.2797 2.7464 0.0006 6 1 3.0984 1.6962 1.2125 7 6 2.0092 -1.2101 -0.0005 8 1 3.0892 -1.2101 -0.0010 9 6 1.3048 -2.4302 -0.0016 10 6 -0.0743 -2.5974 -0.0046 11 7 -0.3649 -3.9214 0.0018 12 1 -1.2622 -4.2900 0.0053 13 6 0.7960 -4.6745 0.0034 14 6 1.8837 -3.7888 -0.0018 15 6 3.1868 -4.2792 -0.0009 16 6 3.4048 -5.6457 0.0045 17 8 4.6755 -6.1298 0.0048 18 6 2.3277 -6.5248 0.0096 19 6 1.0324 -6.0472 0.0084 20 9 -0.0061 -6.9114 0.0129 21 1 -0.4850 0.8400 0.0004 22 1 -0.8007 -1.7983 -0.0077 23 1 4.0234 -3.5962 -0.0045 24 1 5.0442 -6.2661 0.8882 25 1 2.5057 -7.5900 0.0142 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238718492.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:35:51 Heat of formation + Delta-G solvation = -44.818517 kcal Electronic energy + Delta-G solvation = -14215.328011 eV Core-core repulsion = 11494.456364 eV Total energy + Delta-G solvation = -2720.871647 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.21511 -39.80473 -37.65380 -34.37349 -33.56497 -30.56335 -28.04664 -27.52997 -25.02813 -21.90397 -21.11625 -19.73788 -17.94378 -17.24515 -16.11330 -15.73885 -15.33989 -15.03659 -14.83809 -14.14408 -13.94026 -13.07460 -12.83756 -12.63581 -11.77051 -11.53813 -11.37494 -11.24020 -10.87610 -10.38347 -10.26463 -9.92761 -9.76920 -9.50973 -8.44730 -7.15914 -6.79387 -6.61110 -4.11659 1.83920 2.18539 3.06082 3.11878 3.15537 4.00433 4.01531 4.28077 4.38980 4.74963 5.22879 5.44743 5.53003 5.82019 6.15481 6.36194 6.57333 6.67545 6.98457 7.08643 7.24282 7.37031 7.64677 7.73718 8.07310 8.29843 8.49030 8.84576 8.99394 9.03209 10.36754 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.035908 B = 0.009000 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.582747 B = 3110.414559 C = 3877.622940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.056 3.944 3 Si 0.921 3.079 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.416 4.416 8 H 0.074 0.926 9 C 0.019 3.981 10 C -0.082 4.082 11 N -0.577 5.577 12 H 0.399 0.601 13 C 0.046 3.954 14 C -0.099 4.099 15 C -0.078 4.078 16 C 0.044 3.956 17 O -0.498 6.498 18 C -0.169 4.169 19 C 0.072 3.928 20 F -0.157 7.157 21 H 0.276 0.724 22 H 0.198 0.802 23 H 0.122 0.878 24 H 0.373 0.627 25 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.786 -5.018 1.604 5.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.015 3.985 10 C -0.207 4.207 11 N -0.177 5.177 12 H 0.233 0.767 13 C -0.066 4.066 14 C -0.106 4.106 15 C -0.097 4.097 16 C -0.003 4.003 17 O -0.305 6.305 18 C -0.189 4.189 19 C 0.049 3.951 20 F -0.136 7.136 21 H 0.087 0.913 22 H 0.214 0.786 23 H 0.140 0.860 24 H 0.226 0.774 25 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.355 -4.750 0.980 5.036 hybrid contribution -0.185 0.321 0.507 0.628 sum 1.170 -4.429 1.487 4.816 Atomic orbital electron populations 1.69398 1.07265 1.28329 1.41199 1.25670 0.94876 1.00863 0.94073 0.86143 0.79558 0.80086 0.79556 1.19310 1.20617 1.19337 1.18710 0.94091 0.88946 1.43061 0.90793 1.18070 0.90548 0.88944 1.00981 1.23510 0.98263 0.81763 1.17190 1.41578 1.05191 1.06624 1.64342 0.76725 1.18164 0.88857 0.90153 1.09470 1.19125 0.90561 0.94430 1.06515 1.20672 0.96127 0.93574 0.99363 1.17500 0.82962 0.90251 1.09549 1.84877 1.26589 1.86537 1.32531 1.20549 0.90112 0.99743 1.08501 1.16408 0.83755 0.83419 1.11489 1.91374 1.57498 1.69803 1.94926 0.91281 0.78626 0.85992 0.77395 0.85709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -20.89 10.33 55.54 0.57 -20.31 15 2 C 0.06 1.38 5.49 -17.32 -0.10 1.29 15 3 Si 0.92 18.90 29.56 -169.99 -5.02 13.88 15 4 H -0.27 -5.48 7.11 56.52 0.40 -5.08 15 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 6 H -0.27 -5.45 7.11 56.52 0.40 -5.05 15 7 C -0.42 -10.90 9.42 -38.02 -0.36 -11.26 15 8 H 0.07 1.86 7.84 -52.48 -0.41 1.44 15 9 C 0.02 0.51 6.10 -104.79 -0.64 -0.13 15 10 C -0.08 -2.03 10.88 -15.66 -0.17 -2.20 15 11 N -0.58 -12.61 6.00 -9.75 -0.06 -12.67 15 12 H 0.40 7.32 8.96 -40.82 -0.37 6.95 15 13 C 0.05 1.04 7.22 -83.75 -0.60 0.44 15 14 C -0.10 -2.37 6.32 -104.91 -0.66 -3.03 15 15 C -0.08 -1.67 10.03 -39.16 -0.39 -2.06 15 16 C 0.04 0.84 6.70 -39.23 -0.26 0.58 15 17 O -0.50 -8.17 13.50 -19.66 -0.27 -8.43 15 18 C -0.17 -3.19 9.93 -39.35 -0.39 -3.58 15 19 C 0.07 1.47 7.32 -39.26 -0.29 1.19 15 20 F -0.16 -3.04 17.27 2.25 0.04 -3.00 15 21 H 0.28 6.41 8.30 -40.82 -0.34 6.07 15 22 H 0.20 4.93 5.67 -52.49 -0.30 4.63 15 23 H 0.12 2.46 8.06 -52.48 -0.42 2.04 15 24 H 0.37 4.19 9.06 45.56 0.41 4.60 15 25 H 0.12 2.04 8.06 -52.49 -0.42 1.62 15 LS Contribution 233.34 15.07 3.52 3.52 Total: -1.00 -28.07 233.34 -5.73 -33.80 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -0.64 Total: 11.99 kcal Atomic # 6 Polarization: -14.90 SS G_CDS: -3.86 Total: -18.77 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.52 Total: -32.98 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.27 Total: -8.43 kcal Atomic # 9 Polarization: -3.04 SS G_CDS: 0.04 Total: -3.00 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.07 -5.73 -33.80 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238718492.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.020 kcal (2) G-P(sol) polarization free energy of solvation -28.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds