Wall clock time and date at job start Mon Mar 30 2020 02:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31077 * 1 3 3 Si 1.86793 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47201 * 270.00449 * 3 2 1 5 5 H 1.48499 * 109.46812 * 30.00117 * 3 2 1 6 6 H 1.48492 * 109.47436 * 150.00211 * 3 2 1 7 7 C 1.39695 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99660 * 180.02562 * 7 2 1 9 9 C 1.40891 * 120.00313 * 359.97438 * 7 2 1 10 10 C 1.38935 * 126.92597 * 0.02562 * 9 7 2 11 11 N 1.35644 * 109.26188 * 179.97438 * 10 9 7 12 12 H 0.97003 * 124.69983 * 180.02562 * 11 10 9 13 13 C 1.38215 * 110.60198 * 0.02562 * 11 10 9 14 14 C 1.39141 * 132.74156 * 179.70843 * 13 11 10 15 15 C 1.37948 * 120.11499 * 179.86779 * 14 13 11 16 16 C 1.38681 * 120.65858 * 0.45513 * 15 14 13 17 17 F 1.35103 * 119.92934 * 179.79291 * 16 15 14 18 18 C 1.38644 * 120.13501 * 359.77263 * 16 15 14 19 19 O 1.35893 * 120.21141 * 180.02562 * 18 16 15 20 20 C 1.39597 * 119.57523 * 359.97438 * 18 16 15 21 21 H 0.96994 * 120.00009 * 359.97438 * 1 2 3 22 22 H 1.08005 * 125.37036 * 359.97438 * 10 9 7 23 23 H 1.08002 * 119.94072 * 0.29214 * 14 13 11 24 24 H 1.08002 * 119.66928 * 180.23104 * 15 14 13 25 25 H 0.96695 * 114.00113 * 269.97643 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3108 0.0000 0.0000 3 14 2.2448 1.6176 0.0000 4 1 2.4922 2.0464 -1.4001 5 1 1.4422 2.6525 0.7001 6 1 3.5423 1.4401 0.6999 7 6 2.0092 -1.2098 -0.0005 8 1 3.0893 -1.2098 -0.0001 9 6 1.3047 -2.4300 -0.0005 10 6 -0.0745 -2.5975 -0.0005 11 7 -0.3642 -3.9227 -0.0011 12 1 -1.2613 -4.2918 -0.0016 13 6 0.7958 -4.6742 -0.0009 14 6 1.0327 -6.0452 0.0039 15 6 2.3264 -6.5241 -0.0001 16 6 3.4037 -5.6508 0.0006 17 9 4.6646 -6.1358 0.0009 18 6 3.1893 -4.2810 0.0006 19 8 4.2438 -3.4239 0.0007 20 6 1.8833 -3.7880 -0.0007 21 1 -0.4850 0.8400 0.0004 22 1 -0.8013 -1.7987 -0.0001 23 1 0.2023 -6.7358 0.0038 24 1 2.5020 -7.5897 -0.0001 25 1 4.5486 -3.1755 0.8841 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238723738.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:36 Heat of formation + Delta-G solvation = -42.153400 kcal Electronic energy + Delta-G solvation = -14410.419361 eV Core-core repulsion = 11689.663282 eV Total energy + Delta-G solvation = -2720.756079 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -47.96403 -39.86165 -36.99326 -35.00787 -33.44142 -30.24182 -27.90890 -27.68652 -24.85854 -21.90887 -21.03427 -19.65085 -18.17267 -16.59827 -16.41432 -15.90931 -15.23331 -14.73837 -14.54253 -14.05117 -13.52171 -12.93232 -12.81900 -12.52090 -12.33608 -11.58884 -11.23608 -11.16948 -10.71303 -10.32544 -10.23025 -9.88573 -9.46770 -9.44791 -8.40376 -7.12174 -6.72777 -6.56435 -4.06204 1.83760 2.24532 3.07427 3.15966 3.20974 4.05342 4.09016 4.36568 4.42639 4.92572 5.21006 5.47624 5.51287 5.85986 6.17158 6.34810 6.61454 6.87645 6.94536 6.98398 7.24386 7.36391 7.72533 7.79649 8.18121 8.44379 8.57991 8.92199 9.06168 9.09302 10.41454 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.035536 B = 0.010083 C = 0.007882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.733881 B = 2776.353352 C = 3551.680130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.053 3.947 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.410 4.410 8 H 0.080 0.920 9 C 0.027 3.973 10 C -0.093 4.093 11 N -0.582 5.582 12 H 0.397 0.603 13 C 0.084 3.916 14 C -0.131 4.131 15 C -0.135 4.135 16 C -0.010 4.010 17 F -0.154 7.154 18 C 0.137 3.863 19 O -0.485 6.485 20 C -0.136 4.136 21 H 0.274 0.726 22 H 0.196 0.804 23 H 0.114 0.886 24 H 0.123 0.877 25 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.123 -5.452 1.642 5.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.157 4.157 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.442 4.442 8 H 0.099 0.901 9 C 0.022 3.978 10 C -0.218 4.218 11 N -0.182 5.182 12 H 0.231 0.769 13 C -0.029 4.029 14 C -0.153 4.153 15 C -0.155 4.155 16 C -0.032 4.032 17 F -0.133 7.133 18 C 0.091 3.909 19 O -0.294 6.294 20 C -0.144 4.144 21 H 0.085 0.915 22 H 0.212 0.788 23 H 0.132 0.868 24 H 0.141 0.859 25 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.188 -5.223 1.032 5.328 hybrid contribution 0.185 0.508 0.465 0.713 sum -0.003 -4.715 1.497 4.947 Atomic orbital electron populations 1.69429 1.07256 1.28062 1.41633 1.25698 0.94860 1.00900 0.94253 0.86094 0.79927 0.80480 0.78872 1.19880 1.20668 1.18934 1.18898 0.94547 0.88789 1.41976 0.90141 1.18025 0.90400 0.88829 1.00545 1.23481 0.98153 0.81893 1.18225 1.41614 1.05202 1.06731 1.64627 0.76891 1.18062 0.87146 0.91633 1.06029 1.19635 0.95859 0.91690 1.08105 1.20247 0.90951 0.98376 1.05912 1.17503 0.79040 0.91099 1.15544 1.91358 1.38243 1.88478 1.95234 1.17761 0.86091 0.86058 1.00993 1.84766 1.47539 1.64451 1.32648 1.19503 0.90279 0.95852 1.08740 0.91498 0.78788 0.86807 0.85887 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.18 10.33 55.54 0.57 -20.61 15 2 C 0.05 1.34 5.49 -17.33 -0.10 1.24 15 3 Si 0.92 19.41 29.56 -169.99 -5.02 14.38 15 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 15 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 15 7 C -0.41 -10.98 9.26 -38.03 -0.35 -11.33 15 8 H 0.08 2.11 6.94 -52.48 -0.36 1.75 15 9 C 0.03 0.71 6.10 -104.81 -0.64 0.07 15 10 C -0.09 -2.28 10.89 -15.61 -0.17 -2.45 15 11 N -0.58 -12.07 5.99 -9.79 -0.06 -12.12 15 12 H 0.40 6.56 8.96 -40.82 -0.37 6.20 15 13 C 0.08 1.81 7.23 -83.88 -0.61 1.20 15 14 C -0.13 -2.39 10.07 -39.35 -0.40 -2.79 15 15 C -0.13 -2.45 9.98 -39.52 -0.39 -2.85 15 16 C -0.01 -0.21 7.31 -39.27 -0.29 -0.49 15 17 F -0.15 -3.10 17.11 2.25 0.04 -3.06 15 18 C 0.14 3.11 6.74 -38.92 -0.26 2.85 15 19 O -0.49 -10.48 12.33 -19.40 -0.24 -10.72 15 20 C -0.14 -3.31 6.28 -104.80 -0.66 -3.97 15 21 H 0.27 6.43 8.30 -40.82 -0.34 6.09 15 22 H 0.20 4.89 5.68 -52.48 -0.30 4.59 15 23 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 24 H 0.12 1.84 8.06 -52.49 -0.42 1.42 15 25 H 0.38 6.51 9.06 45.56 0.41 6.92 15 LS Contribution 231.06 15.07 3.48 3.48 Total: -1.00 -29.12 231.06 -5.69 -34.81 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -0.60 Total: 12.34 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -3.86 Total: -18.50 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.51 Total: -32.73 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -0.24 Total: -10.72 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.04 Total: -3.06 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.38 kcal Total LS contribution 3.48 Total: 3.48 kcal Total: -29.12 -5.69 -34.81 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238723738.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.345 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds