Wall clock time and date at job start Mon Mar 30 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35535 * 117.00337 * 2 1 4 4 C 1.39418 * 119.91927 * 270.30332 * 3 2 1 5 5 F 1.35103 * 119.78392 * 0.02562 * 4 3 2 6 6 C 1.36498 * 120.44130 * 180.30171 * 4 3 2 7 7 C 1.40955 * 120.25044 * 359.67772 * 6 4 3 8 8 C 1.41273 * 120.08338 * 180.02562 * 7 6 4 9 9 H 1.08004 * 119.99627 * 334.43020 * 8 7 6 10 10 C 1.39854 * 120.00191 * 154.43965 * 8 7 6 11 11 N 1.30889 * 119.99917 * 343.12148 * 10 8 7 12 12 Si 1.86799 * 120.00225 * 163.12461 * 10 8 7 13 13 H 1.48504 * 109.47300 * 89.99507 * 12 10 8 14 14 H 1.48497 * 109.47452 * 210.00034 * 12 10 8 15 15 H 1.48503 * 109.47023 * 329.99747 * 12 10 8 16 16 C 1.40493 * 119.83060 * 0.02562 * 7 6 4 17 17 C 1.39073 * 119.56978 * 0.02562 * 16 7 6 18 18 C 1.43196 * 120.12884 * 180.02562 * 17 16 7 19 19 N 3.52950 * 95.71597 * 78.67055 * 2 1 3 20 20 H 1.09005 * 109.46835 * 300.00405 * 1 2 3 21 21 H 1.09003 * 109.47218 * 59.99595 * 1 2 3 22 22 H 1.08994 * 109.47816 * 180.02562 * 1 2 3 23 23 H 1.07992 * 119.87793 * 179.69814 * 6 4 3 24 24 H 0.97002 * 120.00283 * 179.97438 * 11 10 8 25 25 H 1.07996 * 120.21415 * 180.02562 * 16 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2076 0.0000 4 6 2.3545 1.8301 -1.2084 5 9 2.0390 1.2258 -2.3749 6 6 2.9796 3.0434 -1.2208 7 6 3.3125 3.6832 -0.0098 8 6 3.9590 4.9392 -0.0268 9 1 4.5585 5.2264 -0.8780 10 6 3.8229 5.8106 1.0586 11 7 2.8600 5.6295 1.9265 12 14 5.0153 7.2329 1.2698 13 1 4.4899 8.4285 0.5629 14 1 5.1690 7.5397 2.7146 15 1 6.3352 6.8611 0.6997 16 6 2.9996 3.0687 1.2143 17 6 2.3635 1.8319 1.2185 18 6 2.0385 1.1951 2.4592 19 7 1.7806 0.6899 3.4435 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 3.2199 3.5151 -2.1621 24 1 2.7658 6.2336 2.6795 25 1 3.2514 3.5536 2.1458 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257951740.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:37 Heat of formation + Delta-G solvation = -55.854294 kcal Electronic energy + Delta-G solvation = -14207.436062 eV Core-core repulsion = 11486.085868 eV Total energy + Delta-G solvation = -2721.350195 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 221.059 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.66575 -40.43376 -38.30857 -37.42366 -35.35529 -32.08371 -30.98784 -28.38162 -26.56487 -24.60421 -23.01762 -20.44844 -18.75131 -18.17663 -17.83121 -16.89801 -16.78829 -16.48241 -15.81954 -15.30523 -15.08218 -14.70940 -14.55731 -14.21726 -13.75956 -13.66493 -13.19918 -12.83854 -12.81354 -12.48384 -12.40002 -11.97741 -11.81180 -11.11577 -10.79742 -9.68113 -9.34906 -8.81447 -6.50462 0.00277 0.57402 1.43152 1.48621 1.61355 1.63501 2.00877 2.20096 2.54516 2.93330 3.00506 3.45079 3.73040 4.32388 4.48805 4.52484 4.62110 4.71405 4.79306 5.03363 5.13979 5.27121 5.52874 5.77793 5.88827 6.30216 6.41390 6.57476 6.70033 6.81144 8.15015 Molecular weight = 221.06amu Principal moments of inertia in cm(-1) A = 0.032904 B = 0.009499 C = 0.007692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.745334 B = 2946.823386 C = 3639.052379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C -0.049 4.049 4 C 0.116 3.884 5 F -0.148 7.148 6 C -0.233 4.233 7 C 0.102 3.898 8 C -0.455 4.455 9 H 0.101 0.899 10 C 0.038 3.962 11 N -0.806 5.806 12 Si 0.987 3.013 13 H -0.260 1.260 14 H -0.271 1.271 15 H -0.253 1.253 16 C -0.117 4.117 17 C -0.014 4.014 18 C 0.292 3.708 19 N -0.466 5.466 20 H 0.031 0.969 21 H 0.048 0.952 22 H 0.112 0.888 23 H 0.133 0.867 24 H 0.298 0.702 25 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 0.815 -3.192 3.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.255 6.255 3 C -0.097 4.097 4 C 0.096 3.904 5 F -0.127 7.127 6 C -0.254 4.254 7 C 0.099 3.901 8 C -0.482 4.482 9 H 0.119 0.881 10 C -0.181 4.181 11 N -0.430 5.430 12 Si 0.807 3.193 13 H -0.185 1.185 14 H -0.195 1.195 15 H -0.176 1.176 16 C -0.139 4.139 17 C -0.018 4.018 18 C -0.022 4.022 19 N -0.142 5.142 20 H 0.050 0.950 21 H 0.066 0.934 22 H 0.130 0.870 23 H 0.151 0.849 24 H 0.109 0.891 25 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.301 -0.070 -1.497 1.529 hybrid contribution 0.019 0.769 -0.338 0.840 sum -0.282 0.699 -1.835 1.983 Atomic orbital electron populations 1.23197 0.79791 1.03873 1.00100 1.85982 1.20326 1.24948 1.94205 1.17925 1.11075 0.90906 0.89782 1.17326 1.01232 0.92208 0.79645 1.91382 1.91428 1.83499 1.46418 1.20958 1.08794 0.95938 0.99668 1.17532 0.89687 0.93210 0.89697 1.20007 1.25298 0.98874 1.03997 0.88060 1.26864 0.95794 1.01890 0.93544 1.69815 1.25808 1.36142 1.11199 0.85090 0.78850 0.76766 0.78588 1.18501 1.19538 1.17587 1.21391 1.01534 0.91175 0.99834 1.16058 1.05536 0.94964 0.85263 1.25789 0.92212 0.91702 0.92508 1.81042 1.10781 1.10516 1.11900 0.94996 0.93371 0.86957 0.84887 0.89129 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.81 11.13 113.37 1.26 2.07 15 2 O -0.34 -13.83 9.68 -88.39 -0.86 -14.68 15 3 C -0.05 -2.13 5.75 23.13 0.13 -2.00 15 4 C 0.12 4.93 7.24 22.15 0.16 5.09 15 5 F -0.15 -6.02 17.09 44.97 0.77 -5.25 15 6 C -0.23 -9.93 9.68 22.53 0.22 -9.71 15 7 C 0.10 4.67 5.56 -21.32 -0.12 4.55 15 8 C -0.45 -20.12 9.04 23.41 0.21 -19.90 15 9 H 0.10 4.15 7.90 -2.91 -0.02 4.13 15 10 C 0.04 1.58 5.14 85.22 0.44 2.02 15 11 N -0.81 -36.04 10.96 21.81 0.24 -35.80 15 12 Si 0.99 31.95 29.59 68.60 2.03 33.98 15 13 H -0.26 -8.19 7.11 99.48 0.71 -7.48 15 14 H -0.27 -8.62 7.11 99.48 0.71 -7.91 15 15 H -0.25 -7.97 7.11 99.48 0.71 -7.26 15 16 C -0.12 -5.39 8.38 23.02 0.19 -5.20 15 17 C -0.01 -0.62 5.74 -21.26 -0.12 -0.74 15 18 C 0.29 12.79 14.86 88.33 1.31 14.10 15 19 N -0.47 -20.52 18.54 19.00 0.35 -20.16 15 20 H 0.03 1.06 8.14 -2.38 -0.02 1.04 15 21 H 0.05 1.49 8.14 -2.39 -0.02 1.47 15 22 H 0.11 2.92 8.14 -2.39 -0.02 2.90 15 23 H 0.13 5.15 8.06 -2.91 -0.02 5.13 15 24 H 0.30 12.04 8.30 -92.71 -0.77 11.27 15 25 H 0.13 6.05 6.19 -2.91 -0.02 6.03 15 Total: -1.00 -49.78 244.58 7.45 -42.33 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 1.23 Total: 9.31 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 3.69 Total: -9.72 kcal Atomic # 7 Polarization: -56.56 SS G_CDS: 0.59 Total: -55.97 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.86 Total: -14.68 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.77 Total: -5.25 kcal Atomic # 14 Polarization: 31.95 SS G_CDS: 2.03 Total: 33.98 kcal Total: -49.78 7.45 -42.33 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257951740.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.527 kcal (2) G-P(sol) polarization free energy of solvation -49.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds